Wall clock time and date at job start Tue Mar 31 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35917 * 116.99522 * 180.02562 * 11 10 9 13 13 C 1.38683 * 120.04876 * 359.71845 * 12 11 10 14 14 C 1.38355 * 119.92977 * 179.81416 * 13 12 11 15 15 F 1.35102 * 119.99259 * 180.23669 * 14 13 12 16 16 C 1.38503 * 120.02311 * 0.44529 * 14 13 12 17 17 C 1.38217 * 120.08972 * 359.79065 * 16 14 13 18 18 C 1.38241 * 120.07073 * 0.02562 * 17 16 14 19 19 Br 1.89102 * 120.01078 * 179.97438 * 18 17 16 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.08002 * 120.03297 * 0.03261 * 13 12 11 26 26 H 1.07997 * 119.95823 * 179.76922 * 16 14 13 27 27 H 1.07998 * 119.96309 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 8 1.5308 -4.8996 0.0020 12 6 2.2711 -6.0395 0.0024 13 6 3.6561 -5.9680 -0.0036 14 6 4.4073 -7.1298 0.0007 15 9 5.7566 -7.0616 -0.0003 16 6 3.7766 -8.3629 0.0016 17 6 2.3963 -8.4352 0.0027 18 6 1.6420 -7.2767 0.0022 19 35 -0.2463 -7.3776 0.0029 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 4.1477 -5.0063 -0.0081 26 1 4.3640 -9.2691 0.0012 27 1 1.9066 -9.3978 0.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089064044.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:56 Heat of formation + Delta-G solvation = -83.852707 kcal Electronic energy + Delta-G solvation = -14572.986934 eV Core-core repulsion = 11676.945207 eV Total energy + Delta-G solvation = -2896.041727 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 287.990 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.07062 -41.20467 -38.52251 -35.48622 -33.23672 -32.43562 -31.24667 -29.68994 -27.11088 -24.42714 -23.44152 -22.45809 -19.80133 -18.44110 -17.91671 -17.24117 -17.02996 -16.87436 -16.57841 -16.53209 -15.30045 -15.05756 -14.49877 -14.35695 -14.18506 -13.26469 -13.26334 -12.77842 -12.73089 -12.52580 -12.44423 -11.73931 -11.65296 -11.64907 -11.40670 -11.17006 -10.63028 -9.97720 -9.30615 -8.27001 -6.40449 -0.20861 0.11877 0.64975 1.41100 1.41470 1.54769 2.08347 2.31500 2.42810 3.04609 3.07881 3.57013 3.81364 3.92557 4.20782 4.21956 4.27238 4.63747 4.67134 4.87500 4.95306 4.99141 5.30809 5.46508 5.54339 5.70194 6.04623 6.24537 6.74527 7.29760 8.86030 Molecular weight = 287.99amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.005045 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.853609 B = 5548.931317 C = 7021.338006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.030 3.970 10 C 0.078 3.922 11 O -0.315 6.315 12 C 0.169 3.831 13 C -0.255 4.255 14 C 0.149 3.851 15 F -0.134 7.134 16 C -0.179 4.179 17 C -0.013 4.013 18 C -0.158 4.158 19 Br -0.039 7.039 20 H 0.267 0.733 21 H 0.001 0.999 22 H 0.001 0.999 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.147 0.853 26 H 0.180 0.820 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 -19.676 0.003 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.004 3.996 11 O -0.228 6.228 12 C 0.120 3.880 13 C -0.275 4.275 14 C 0.129 3.871 15 F -0.112 7.112 16 C -0.198 4.198 17 C -0.033 4.033 18 C -0.239 4.239 19 Br 0.046 6.954 20 H 0.075 0.925 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.165 0.835 26 H 0.197 0.803 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.577 -19.552 0.004 20.081 hybrid contribution 0.803 1.362 0.002 1.581 sum 5.380 -18.190 0.005 18.969 Atomic orbital electron populations 1.70119 1.07976 1.28133 1.50597 1.25999 0.95784 1.03562 0.94214 0.85272 0.79072 0.78099 0.77834 1.18185 1.20306 1.20319 1.21417 0.93820 0.90996 1.52082 0.91122 1.18939 0.94445 0.91016 0.96276 1.23043 0.95671 0.79829 1.01043 1.86259 1.36442 1.13345 1.86762 1.18736 0.89668 0.86869 0.92699 1.21289 0.92650 1.00434 1.13155 1.17601 0.76719 0.94246 0.98492 1.91521 1.29010 1.97300 1.93397 1.21344 0.94742 0.97074 1.06649 1.21159 0.92535 0.97164 0.92398 1.21395 0.91940 0.93529 1.17008 1.96697 1.02184 1.98641 1.97860 0.92461 0.98105 0.98100 0.91615 0.91614 0.83540 0.80284 0.80199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.70 15 2 C 0.00 0.18 5.46 84.66 0.46 0.64 15 3 Si 0.97 43.15 29.54 68.60 2.03 45.17 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 15 7 C -0.55 -30.23 9.11 25.60 0.23 -29.99 15 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 15 9 C 0.03 1.62 5.34 29.85 0.16 1.78 15 10 C 0.08 3.26 4.68 71.98 0.34 3.60 15 11 O -0.32 -12.56 9.47 -92.61 -0.88 -13.44 15 12 C 0.17 5.50 6.67 22.51 0.15 5.65 15 13 C -0.25 -7.35 9.01 22.40 0.20 -7.15 15 14 C 0.15 3.55 7.30 22.36 0.16 3.72 15 15 F -0.13 -3.19 17.27 44.97 0.78 -2.42 15 16 C -0.18 -3.21 10.02 22.33 0.22 -2.98 15 17 C -0.01 -0.25 9.78 22.27 0.22 -0.03 15 18 C -0.16 -4.34 6.24 22.41 0.14 -4.20 15 19 Br -0.04 -1.09 33.15 -20.37 -0.68 -1.77 15 20 H 0.27 14.98 8.31 -92.71 -0.77 14.21 15 21 H 0.00 0.03 8.14 -2.39 -0.02 0.01 15 22 H 0.00 0.03 8.14 -2.39 -0.02 0.01 15 23 H 0.07 2.57 7.65 -2.39 -0.02 2.55 15 24 H 0.07 2.57 7.67 -2.39 -0.02 2.55 15 25 H 0.15 4.24 6.30 -2.91 -0.02 4.22 15 26 H 0.18 1.90 8.06 -2.91 -0.02 1.88 15 27 H 0.18 2.17 8.06 -2.91 -0.02 2.15 15 Total: -1.00 -63.60 267.72 5.01 -58.59 By element: Atomic # 1 Polarization: -2.66 SS G_CDS: 1.19 Total: -1.48 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 2.29 Total: -28.97 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.28 Total: -55.70 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.88 Total: -13.44 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 35 Polarization: -1.09 SS G_CDS: -0.68 Total: -1.77 kcal Total: -63.60 5.01 -58.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089064044.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.264 kcal (2) G-P(sol) polarization free energy of solvation -63.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds