Wall clock time and date at job start Tue Mar 31 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38264 * 119.99832 * 2 1 4 4 C 1.38216 * 119.99625 * 179.97438 * 3 2 1 5 5 C 1.38251 * 120.00520 * 359.97438 * 4 3 2 6 6 C 1.38215 * 119.99875 * 359.80896 * 5 4 3 7 7 C 1.38207 * 120.00414 * 180.02562 * 2 1 3 8 8 C 1.50704 * 119.99660 * 359.97438 * 7 2 1 9 9 H 1.08999 * 115.55120 * 25.66664 * 8 7 2 10 10 C 1.53007 * 117.49736 * 171.37440 * 8 7 2 11 11 C 1.52995 * 117.49559 * 239.99409 * 8 7 2 12 12 H 1.08995 * 117.50038 * 0.02599 * 11 8 7 13 13 C 1.50707 * 117.49675 * 145.02210 * 11 8 7 14 14 O 1.21288 * 120.00052 * 359.97438 * 13 11 8 15 15 N 1.34778 * 120.00051 * 180.27729 * 13 11 8 16 16 C 1.37097 * 119.99967 * 179.72697 * 15 13 11 17 17 H 1.08000 * 120.00164 * 135.67114 * 16 15 13 18 18 C 1.38948 * 119.99846 * 315.66435 * 16 15 13 19 19 N 1.31418 * 120.00170 * 341.06117 * 18 16 15 20 20 Si 1.86802 * 120.00115 * 161.05755 * 18 16 15 21 21 H 1.48505 * 109.46838 * 60.00224 * 20 18 16 22 22 H 1.48491 * 109.47090 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46911 * 300.00352 * 20 18 16 24 24 C 1.46499 * 119.99909 * 359.72150 * 15 13 11 25 25 C 1.52999 * 109.46896 * 115.15450 * 24 15 13 26 26 C 1.53000 * 109.47087 * 235.15624 * 24 15 13 27 27 H 1.08997 * 109.47233 * 269.98175 * 1 2 3 28 28 H 1.09005 * 109.47050 * 29.98123 * 1 2 3 29 29 H 1.09003 * 109.47086 * 149.97773 * 1 2 3 30 30 H 1.08003 * 120.00054 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99355 * 180.02562 * 4 3 2 32 32 H 1.07995 * 120.00392 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.00056 * 180.23203 * 6 5 4 34 34 H 1.08997 * 117.49726 * 359.97438 * 10 8 7 35 35 H 1.08996 * 117.49622 * 214.98098 * 10 8 7 36 36 H 0.96996 * 119.99969 * 180.02562 * 19 18 16 37 37 H 1.09005 * 109.47189 * 355.15818 * 24 15 13 38 38 H 1.09000 * 109.46799 * 62.99484 * 25 24 15 39 39 H 1.09005 * 109.46888 * 182.98991 * 25 24 15 40 40 H 1.08993 * 109.47716 * 302.99063 * 25 24 15 41 41 H 1.09001 * 109.47031 * 53.90107 * 26 24 15 42 42 H 1.09004 * 109.46694 * 173.90039 * 26 24 15 43 43 H 1.09000 * 109.47172 * 293.90185 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5807 -1.1969 0.0061 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 1 0.4417 -2.4659 -0.4261 10 6 2.2534 -3.7847 -0.2047 11 6 1.6796 -3.4533 1.1744 12 1 2.3788 -3.1351 1.9476 13 6 0.5069 -4.2692 1.6545 14 8 -0.5724 -4.1568 1.1128 15 7 0.6561 -5.1192 2.6898 16 6 -0.4121 -5.8572 3.1301 17 1 -0.2872 -6.9057 3.3571 18 6 -1.6554 -5.2562 3.2844 19 7 -1.7462 -3.9484 3.3763 20 14 -3.1978 -6.3072 3.3610 21 1 -3.1046 -7.2397 4.5131 22 1 -4.3856 -5.4317 3.5271 23 1 -3.3292 -7.0858 2.1033 24 6 1.9596 -5.2545 3.3444 25 6 1.8588 -4.7595 4.7886 26 6 2.3836 -6.7246 3.3376 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6582 2.1327 -0.0004 31 1 4.1203 2.1327 0.0010 32 1 5.3516 0.0001 0.0024 33 1 4.1207 -2.1321 0.0108 34 1 3.3303 -3.6845 -0.3394 35 1 1.7827 -4.5926 -0.7648 36 1 -2.6141 -3.5289 3.4844 37 1 2.6993 -4.6605 2.8076 38 1 1.1585 -5.3872 5.3397 39 1 2.8405 -4.8105 5.2595 40 1 1.5056 -3.7284 4.7956 41 1 2.3507 -7.1074 2.3175 42 1 3.3984 -6.8118 3.7259 43 1 1.7038 -7.3017 3.9643 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089689230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:04 Heat of formation + Delta-G solvation = 18.266691 kcal Electronic energy + Delta-G solvation = -23236.089912 eV Core-core repulsion = 20054.182106 eV Total energy + Delta-G solvation = -3181.907806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.79720 -38.46628 -36.13360 -34.75220 -32.63519 -32.19670 -30.34077 -29.81355 -26.69936 -26.41997 -25.56104 -23.71566 -22.72337 -21.19004 -20.55980 -19.99000 -18.62953 -17.03514 -16.15541 -15.66094 -15.15250 -14.82765 -14.54698 -14.14170 -13.99856 -13.53401 -13.34686 -13.08470 -12.99699 -12.88289 -12.15854 -12.04959 -11.90157 -11.83542 -11.67521 -11.47521 -11.42814 -11.04750 -10.88957 -10.73099 -10.63672 -10.50883 -10.44954 -10.17021 -10.12803 -9.83452 -9.75159 -8.67033 -8.59355 -8.22253 -7.96760 -7.02696 -6.04175 -3.78034 1.49999 1.54208 3.34201 3.41320 3.45147 3.73178 4.08711 4.34276 4.70255 4.79295 5.00468 5.05287 5.12368 5.18007 5.31231 5.42620 5.46832 5.50645 5.62933 5.71495 5.77056 5.85730 5.97055 5.99805 6.02907 6.06634 6.08984 6.17164 6.26796 6.27195 6.42043 6.51235 6.52571 6.59123 6.63172 6.63701 6.68395 6.75909 6.97793 6.99092 7.17765 7.18648 7.70542 8.36708 9.15951 9.26730 9.75649 10.40338 11.04853 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.005167 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.946836 B = 5418.221292 C = 6231.006582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.073 4.073 3 C -0.122 4.122 4 C -0.129 4.129 5 C -0.127 4.127 6 C -0.119 4.119 7 C -0.040 4.040 8 C -0.099 4.099 9 H 0.125 0.875 10 C -0.158 4.158 11 C -0.150 4.150 12 H 0.107 0.893 13 C 0.505 3.495 14 O -0.538 6.538 15 N -0.444 5.444 16 C -0.344 4.344 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.831 5.831 20 Si 0.906 3.094 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.124 3.876 25 C -0.146 4.146 26 C -0.150 4.150 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.262 0.738 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.039 0.961 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.170 6.063 -4.367 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.073 4.073 3 C -0.140 4.140 4 C -0.147 4.147 5 C -0.145 4.145 6 C -0.137 4.137 7 C -0.040 4.040 8 C -0.117 4.117 9 H 0.143 0.857 10 C -0.195 4.195 11 C -0.172 4.172 12 H 0.125 0.875 13 C 0.292 3.708 14 O -0.416 6.416 15 N -0.166 5.166 16 C -0.471 4.471 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.465 5.465 20 Si 0.734 3.266 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.201 1.201 24 C 0.019 3.981 25 C -0.204 4.204 26 C -0.208 4.208 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.466 6.273 -4.598 13.040 hybrid contribution -0.657 -0.318 0.284 0.784 sum 9.809 5.955 -4.314 12.259 Atomic orbital electron populations 1.20858 0.90932 1.02565 1.03111 1.19787 0.96378 0.92307 0.98838 1.20988 0.94214 0.97280 1.01505 1.21033 0.94275 0.97792 1.01585 1.21025 0.99454 0.92528 1.01544 1.21051 0.93700 0.98152 1.00829 1.19136 0.92948 0.93284 0.98644 1.21061 1.00268 0.87188 1.03210 0.85708 1.23019 0.98951 0.98771 0.98779 1.22488 1.01160 1.01864 0.91666 0.87519 1.18960 0.87479 0.83099 0.81251 1.90498 1.27053 1.66546 1.57549 1.43217 1.07548 1.39384 1.26439 1.18803 0.87536 0.92380 1.48335 0.90603 1.25192 0.99220 0.95003 0.94234 1.69865 1.24868 1.09426 1.42308 0.86384 0.82033 0.79883 0.78340 1.20487 1.21348 1.20108 1.21069 0.87839 0.95430 0.93754 1.21978 0.99628 1.01947 0.96826 1.22021 0.99573 0.97548 1.01640 0.90623 0.92187 0.90670 0.86349 0.86553 0.86468 0.85990 0.88698 0.88307 0.92780 0.91611 0.91875 0.94188 0.92906 0.93104 0.93555 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.60 36.00 0.35 -1.44 16 2 C -0.07 -1.12 5.88 -104.63 -0.62 -1.74 16 3 C -0.12 -1.61 9.70 -39.58 -0.38 -2.00 16 4 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 5 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 6 C -0.12 -1.66 9.29 -39.58 -0.37 -2.03 16 7 C -0.04 -0.64 5.61 -104.62 -0.59 -1.23 16 8 C -0.10 -1.78 5.03 -91.77 -0.46 -2.24 16 9 H 0.13 2.49 5.77 -51.93 -0.30 2.19 16 10 C -0.16 -2.58 9.56 -26.73 -0.26 -2.84 16 11 C -0.15 -2.97 4.58 -91.77 -0.42 -3.39 16 12 H 0.11 2.00 6.74 -51.93 -0.35 1.65 16 13 C 0.51 12.76 6.76 -10.98 -0.07 12.68 16 14 O -0.54 -15.72 14.05 5.55 0.08 -15.65 16 15 N -0.44 -10.98 2.44 -107.73 -0.26 -11.24 16 16 C -0.34 -9.33 8.06 -14.93 -0.12 -9.45 16 17 H 0.08 2.00 6.98 -52.49 -0.37 1.63 16 18 C 0.07 2.08 4.36 -17.47 -0.08 2.00 16 19 N -0.83 -24.58 11.81 55.50 0.66 -23.93 16 20 Si 0.91 22.05 29.59 -169.99 -5.03 17.02 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.12 2.45 3.11 -67.93 -0.21 2.24 16 25 C -0.15 -2.79 9.19 37.16 0.34 -2.45 16 26 C -0.15 -2.59 8.90 37.16 0.33 -2.26 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 29 H 0.07 1.22 6.06 -51.93 -0.31 0.91 16 30 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.51 6.03 -52.49 -0.32 1.19 16 34 H 0.09 1.26 6.18 -51.93 -0.32 0.94 16 35 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.07 1.18 5.52 -51.93 -0.29 0.90 16 38 H 0.06 1.30 7.86 -51.93 -0.41 0.89 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.11 7.26 -51.93 -0.38 0.73 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -32.15 346.75 -9.08 -41.24 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.40 Total: 5.38 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -3.35 Total: -18.05 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.39 Total: -35.17 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.08 Total: -15.65 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.15 -9.08 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089689230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.505 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds