Wall clock time and date at job start Tue Mar 31 2020 02:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38264 * 119.99832 * 2 1 4 4 C 1.38216 * 119.99625 * 179.97438 * 3 2 1 5 5 C 1.38251 * 120.00520 * 359.97438 * 4 3 2 6 6 C 1.38215 * 119.99875 * 359.80896 * 5 4 3 7 7 C 1.38207 * 120.00414 * 180.02562 * 2 1 3 8 8 C 1.50704 * 119.99660 * 359.97438 * 7 2 1 9 9 H 1.08999 * 115.55120 * 25.66664 * 8 7 2 10 10 C 1.53007 * 117.49736 * 171.37440 * 8 7 2 11 11 C 1.52995 * 117.49559 * 239.99409 * 8 7 2 12 12 H 1.08995 * 117.50038 * 0.02599 * 11 8 7 13 13 C 1.50707 * 117.49675 * 145.02210 * 11 8 7 14 14 O 1.21288 * 120.00052 * 359.97438 * 13 11 8 15 15 N 1.34778 * 120.00051 * 180.27729 * 13 11 8 16 16 C 1.37097 * 119.99967 * 179.72697 * 15 13 11 17 17 H 1.08000 * 120.00164 * 135.67114 * 16 15 13 18 18 C 1.38948 * 119.99846 * 315.66435 * 16 15 13 19 19 N 1.31418 * 120.00170 * 341.06117 * 18 16 15 20 20 Si 1.86802 * 120.00115 * 161.05755 * 18 16 15 21 21 H 1.48505 * 109.46838 * 60.00224 * 20 18 16 22 22 H 1.48491 * 109.47090 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46911 * 300.00352 * 20 18 16 24 24 C 1.46499 * 119.99909 * 359.72150 * 15 13 11 25 25 C 1.52999 * 109.46896 * 115.15450 * 24 15 13 26 26 C 1.53000 * 109.47087 * 235.15624 * 24 15 13 27 27 H 1.08997 * 109.47233 * 269.98175 * 1 2 3 28 28 H 1.09005 * 109.47050 * 29.98123 * 1 2 3 29 29 H 1.09003 * 109.47086 * 149.97773 * 1 2 3 30 30 H 1.08003 * 120.00054 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99355 * 180.02562 * 4 3 2 32 32 H 1.07995 * 120.00392 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.00056 * 180.23203 * 6 5 4 34 34 H 1.08997 * 117.49726 * 359.97438 * 10 8 7 35 35 H 1.08996 * 117.49622 * 214.98098 * 10 8 7 36 36 H 0.96996 * 119.99969 * 180.02562 * 19 18 16 37 37 H 1.09005 * 109.47189 * 355.15818 * 24 15 13 38 38 H 1.09000 * 109.46799 * 62.99484 * 25 24 15 39 39 H 1.09005 * 109.46888 * 182.98991 * 25 24 15 40 40 H 1.08993 * 109.47716 * 302.99063 * 25 24 15 41 41 H 1.09001 * 109.47031 * 53.90107 * 26 24 15 42 42 H 1.09004 * 109.46694 * 173.90039 * 26 24 15 43 43 H 1.09000 * 109.47172 * 293.90185 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5807 -1.1969 0.0061 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 1 0.4417 -2.4659 -0.4261 10 6 2.2534 -3.7847 -0.2047 11 6 1.6796 -3.4533 1.1744 12 1 2.3788 -3.1351 1.9476 13 6 0.5069 -4.2692 1.6545 14 8 -0.5724 -4.1568 1.1128 15 7 0.6561 -5.1192 2.6898 16 6 -0.4121 -5.8572 3.1301 17 1 -0.2872 -6.9057 3.3571 18 6 -1.6554 -5.2562 3.2844 19 7 -1.7462 -3.9484 3.3763 20 14 -3.1978 -6.3072 3.3610 21 1 -3.1046 -7.2397 4.5131 22 1 -4.3856 -5.4317 3.5271 23 1 -3.3292 -7.0858 2.1033 24 6 1.9596 -5.2545 3.3444 25 6 1.8588 -4.7595 4.7886 26 6 2.3836 -6.7246 3.3376 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6582 2.1327 -0.0004 31 1 4.1203 2.1327 0.0010 32 1 5.3516 0.0001 0.0024 33 1 4.1207 -2.1321 0.0108 34 1 3.3303 -3.6845 -0.3394 35 1 1.7827 -4.5926 -0.7648 36 1 -2.6141 -3.5289 3.4844 37 1 2.6993 -4.6605 2.8076 38 1 1.1585 -5.3872 5.3397 39 1 2.8405 -4.8105 5.2595 40 1 1.5056 -3.7284 4.7956 41 1 2.3507 -7.1074 2.3175 42 1 3.3984 -6.8118 3.7259 43 1 1.7038 -7.3017 3.9643 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089689230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:03 Heat of formation + Delta-G solvation = 1.374523 kcal Electronic energy + Delta-G solvation = -23236.822411 eV Core-core repulsion = 20054.182106 eV Total energy + Delta-G solvation = -3182.640305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.12811 -40.03184 -37.62590 -36.54560 -34.22917 -33.70209 -31.73590 -31.36555 -27.98495 -27.82674 -27.41480 -24.93240 -24.41150 -22.28177 -22.21385 -21.30133 -20.35298 -18.60762 -17.64893 -17.25096 -16.70900 -16.45041 -15.90146 -15.64533 -15.41889 -15.03445 -14.80841 -14.71578 -14.51812 -13.92013 -13.64036 -13.52660 -13.49724 -13.19424 -13.07316 -13.01487 -12.88878 -12.73346 -12.51741 -12.49019 -12.15911 -11.98831 -11.93372 -11.76117 -11.52536 -11.36682 -11.23999 -10.72178 -10.00652 -9.61982 -9.32461 -9.04367 -8.16342 -5.92306 0.43952 0.52569 1.35760 1.44143 1.47460 2.17648 2.40367 2.81143 3.05488 3.23623 3.35425 3.71371 3.91191 3.97904 4.06238 4.08650 4.19072 4.21363 4.31169 4.42006 4.45834 4.51145 4.59502 4.67817 4.71771 4.78595 4.82959 4.91625 4.97678 5.02858 5.08237 5.11811 5.18260 5.20758 5.22733 5.32133 5.49341 5.55873 5.61177 5.64712 5.66172 5.84887 6.18044 6.27164 7.10460 7.28800 7.77029 8.44048 8.92362 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.005167 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.946836 B = 5418.221292 C = 6231.006582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.123 4.123 7 C -0.063 4.063 8 C -0.097 4.097 9 H 0.091 0.909 10 C -0.126 4.126 11 C -0.165 4.165 12 H 0.120 0.880 13 C 0.490 3.510 14 O -0.593 6.593 15 N -0.458 5.458 16 C -0.350 4.350 17 H 0.080 0.920 18 C 0.022 3.978 19 N -0.869 5.869 20 Si 0.962 3.038 21 H -0.256 1.256 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.114 3.886 25 C -0.136 4.136 26 C -0.141 4.141 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.255 0.745 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.024 0.976 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.855 6.489 -4.505 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.063 4.063 8 C -0.116 4.116 9 H 0.109 0.891 10 C -0.163 4.163 11 C -0.187 4.187 12 H 0.138 0.862 13 C 0.279 3.721 14 O -0.476 6.476 15 N -0.179 5.179 16 C -0.478 4.478 17 H 0.097 0.903 18 C -0.184 4.184 19 N -0.505 5.505 20 Si 0.787 3.213 21 H -0.181 1.181 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.011 3.989 25 C -0.194 4.194 26 C -0.198 4.198 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.155 0.845 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.188 6.667 -4.705 16.367 hybrid contribution -1.706 -0.419 0.296 1.781 sum 12.482 6.248 -4.409 14.638 Atomic orbital electron populations 1.20771 0.92000 1.02655 1.01600 1.19919 0.96032 0.93438 1.00472 1.21256 0.95220 0.97053 1.00925 1.21474 0.93774 0.99349 0.99598 1.21445 1.01173 0.91762 0.99764 1.21268 0.92554 0.99856 1.00376 1.19102 0.94091 0.92086 1.01071 1.20925 0.99657 0.89272 1.01722 0.89101 1.23136 1.00960 0.97203 0.95043 1.22241 0.99974 1.03130 0.93315 0.86199 1.19875 0.88359 0.83026 0.80837 1.90451 1.29593 1.68259 1.59294 1.43531 1.08839 1.38839 1.26676 1.19084 0.88657 0.92866 1.47156 0.90281 1.25989 1.02121 0.95911 0.94353 1.69991 1.24695 1.11044 1.44749 0.85508 0.78646 0.78568 0.78551 1.18074 1.21697 1.20889 1.21401 0.85911 0.97778 0.93812 1.21894 1.01408 0.99529 0.96615 1.21938 1.01501 0.95050 1.01360 0.92966 0.89705 0.92974 0.84479 0.83294 0.83119 0.84239 0.84435 0.89327 0.93622 0.89294 0.94050 0.89698 0.95678 0.93562 0.89401 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.66 9.60 71.23 0.68 -2.98 16 2 C -0.10 -3.02 5.88 -19.87 -0.12 -3.14 16 3 C -0.13 -3.08 9.70 22.27 0.22 -2.87 16 4 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 5 C -0.12 -2.50 10.05 22.27 0.22 -2.27 16 6 C -0.12 -3.03 9.29 22.27 0.21 -2.82 16 7 C -0.06 -1.99 5.61 -19.86 -0.11 -2.10 16 8 C -0.10 -3.58 5.03 -11.54 -0.06 -3.64 16 9 H 0.09 3.95 5.77 -2.39 -0.01 3.94 16 10 C -0.13 -3.98 9.56 30.60 0.29 -3.69 16 11 C -0.17 -6.56 4.58 -11.54 -0.05 -6.62 16 12 H 0.12 4.38 6.74 -2.39 -0.02 4.36 16 13 C 0.49 25.68 6.76 87.66 0.59 26.28 16 14 O -0.59 -36.84 14.05 -3.05 -0.04 -36.88 16 15 N -0.46 -23.10 2.44 -613.13 -1.49 -24.59 16 16 C -0.35 -19.51 8.06 84.04 0.68 -18.84 16 17 H 0.08 4.24 6.98 -2.91 -0.02 4.22 16 18 C 0.02 1.29 4.36 84.92 0.37 1.66 16 19 N -0.87 -54.16 11.81 21.66 0.26 -53.91 16 20 Si 0.96 46.81 29.59 68.60 2.03 48.84 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 24 C 0.11 4.40 3.11 44.99 0.14 4.54 16 25 C -0.14 -5.10 9.19 71.98 0.66 -4.44 16 26 C -0.14 -4.55 8.90 71.98 0.64 -3.91 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 2.18 8.09 -2.38 -0.02 2.16 16 29 H 0.05 1.88 6.06 -2.39 -0.01 1.86 16 30 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.14 2.83 6.03 -2.91 -0.02 2.81 16 34 H 0.14 3.13 6.18 -2.39 -0.01 3.11 16 35 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.09 2.99 5.52 -2.38 -0.01 2.98 16 38 H 0.04 1.70 7.86 -2.39 -0.02 1.68 16 39 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.04 1.61 7.26 -2.39 -0.02 1.59 16 Total: -1.00 -75.44 346.75 6.34 -69.11 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 1.00 Total: 24.55 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 4.59 Total: -27.11 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -1.24 Total: -78.50 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.04 Total: -36.88 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -75.44 6.34 -69.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089689230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.480 kcal (2) G-P(sol) polarization free energy of solvation -75.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds