Wall clock time and date at job start Tue Mar 31 2020 04:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 119.99937 * 2 1 4 4 H 1.48497 * 109.47368 * 270.00347 * 3 2 1 5 5 H 1.48494 * 109.46956 * 30.00613 * 3 2 1 6 6 H 1.48506 * 109.46900 * 150.00375 * 3 2 1 7 7 C 1.38947 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00388 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00278 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99866 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99810 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.46694 * 181.98297 * 12 10 9 14 14 C 1.46474 * 111.00185 * 297.33272 * 13 12 10 15 15 C 1.53245 * 109.85959 * 197.76833 * 14 13 12 16 16 S 1.81905 * 108.50931 * 297.99746 * 15 14 13 17 17 C 1.81905 * 101.91185 * 51.30416 * 16 15 14 18 18 C 1.46466 * 111.00417 * 63.31345 * 13 12 10 19 19 H 1.08993 * 109.41065 * 282.35726 * 18 13 12 20 20 C 1.53006 * 109.40241 * 42.19373 * 18 13 12 21 21 C 1.50694 * 109.47234 * 185.95529 * 20 18 13 22 22 O 1.20834 * 119.99808 * 358.05522 * 21 20 18 23 23 O 1.34228 * 120.00408 * 178.05736 * 21 20 18 24 24 H 0.96995 * 119.99830 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99746 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.46979 * 61.98472 * 12 10 9 27 27 H 1.08994 * 109.47161 * 301.98334 * 12 10 9 28 28 H 1.08997 * 109.40327 * 317.88902 * 14 13 12 29 29 H 1.09002 * 109.40601 * 77.72787 * 14 13 12 30 30 H 1.08999 * 109.63747 * 57.69999 * 15 14 13 31 31 H 1.08994 * 109.63237 * 178.09510 * 15 14 13 32 32 H 1.08999 * 109.63033 * 188.99201 * 17 16 15 33 33 H 1.08995 * 109.62908 * 68.40378 * 17 16 15 34 34 H 1.08997 * 109.47082 * 305.95671 * 20 18 13 35 35 H 1.09002 * 109.47064 * 65.95661 * 20 18 13 36 36 H 0.96700 * 117.00401 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8630 0.0000 13 7 2.1977 -5.9790 0.0478 14 6 3.0517 -5.9910 -1.1422 15 6 3.7118 -7.3655 -1.2953 16 16 4.7633 -7.6663 0.1582 17 6 3.6160 -7.3264 1.5283 18 6 2.9691 -5.9573 1.2927 19 1 3.7465 -5.1964 1.2239 20 6 2.0383 -5.6288 2.4618 21 6 2.8513 -5.4619 3.7196 22 8 4.0480 -5.6269 3.6918 23 8 2.2462 -5.1301 4.8709 24 1 -0.4849 0.8400 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6438 -4.9364 -0.9069 27 1 0.5911 -4.9052 0.8719 28 1 2.4469 -5.7793 -2.0239 29 1 3.8242 -5.2287 -1.0413 30 1 2.9434 -8.1361 -1.3571 31 1 4.3195 -7.3811 -2.2000 32 1 4.1640 -7.3153 2.4705 33 1 2.8444 -8.0957 1.5592 34 1 1.5020 -4.7038 2.2504 35 1 1.3235 -6.4406 2.5963 36 1 2.8093 -5.0340 5.6511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091131934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:30 Heat of formation + Delta-G solvation = -114.117897 kcal Electronic energy + Delta-G solvation = -21810.209886 eV Core-core repulsion = 18420.913305 eV Total energy + Delta-G solvation = -3389.296581 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.48694 -39.27337 -36.97917 -36.01951 -34.00923 -32.76401 -31.51610 -30.63267 -28.41151 -26.31537 -24.17267 -23.37756 -21.59660 -20.27097 -19.09795 -18.12144 -17.88096 -16.87038 -16.71338 -16.00403 -15.79424 -15.10830 -14.83993 -14.63070 -14.54874 -13.92816 -13.69704 -13.28389 -13.16130 -12.70498 -12.59625 -12.31421 -12.03789 -11.78552 -11.64286 -11.51028 -11.32584 -11.20985 -10.70683 -10.62400 -10.47377 -10.33057 -10.30023 -9.58887 -9.49799 -9.32455 -8.09256 -7.70945 -7.41765 -6.53384 -3.94772 2.00198 2.28163 2.72587 3.02729 3.09387 3.20181 3.25878 3.71214 4.05734 4.10169 4.74686 4.84934 4.89038 5.10148 5.18512 5.30982 5.34934 5.43763 5.46135 5.52570 5.64997 5.74969 5.87078 5.92874 5.96199 6.09553 6.38301 6.50955 6.59996 7.05486 7.20617 7.44420 7.92180 7.95334 8.46238 9.05115 9.39155 9.89269 10.62969 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.005424 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.718202 B = 5160.908064 C = 6039.738755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.929 3.071 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.553 5.553 10 C 0.399 3.601 11 O -0.589 6.589 12 C 0.034 3.966 13 N -0.521 5.521 14 C 0.046 3.954 15 C -0.073 4.073 16 S -0.275 6.275 17 C -0.070 4.070 18 C 0.088 3.912 19 H 0.101 0.899 20 C -0.115 4.115 21 C 0.483 3.517 22 O -0.509 6.509 23 O -0.517 6.517 24 H 0.273 0.727 25 H 0.393 0.607 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 -12.438 3.371 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.756 3.244 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.121 0.879 9 N -0.189 5.189 10 C 0.184 3.816 11 O -0.476 6.476 12 C -0.097 4.097 13 N -0.245 5.245 14 C -0.083 4.083 15 C -0.221 4.221 16 S -0.047 6.047 17 C -0.219 4.219 18 C -0.021 4.021 19 H 0.119 0.881 20 C -0.154 4.154 21 C 0.325 3.675 22 O -0.397 6.397 23 O -0.329 6.329 24 H 0.083 0.917 25 H 0.226 0.774 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.957 -13.140 3.024 13.517 hybrid contribution -0.781 2.099 0.441 2.283 sum 0.176 -11.041 3.465 11.573 Atomic orbital electron populations 1.69599 1.05963 1.28418 1.49732 1.25281 0.95621 0.99841 0.96902 0.85872 0.79310 0.80729 0.78513 1.20285 1.20799 1.19385 1.19719 0.93425 0.82298 1.47879 0.87905 1.42026 1.09278 1.04877 1.62681 1.21006 0.88938 0.85897 0.85775 1.90493 1.13659 1.86831 1.56607 1.22243 0.95287 0.88139 1.04022 1.61690 1.19188 1.41746 1.01829 1.22377 0.97847 0.95761 0.92315 1.23515 1.00495 1.00663 0.97476 1.86766 1.24015 1.90859 1.03091 1.23698 0.99896 0.98968 0.99312 1.21686 0.95715 0.97114 0.87612 0.88095 1.21620 0.98885 1.05949 0.88982 1.23368 0.87193 0.72003 0.84892 1.90707 1.16471 1.46718 1.85800 1.84540 1.46310 1.81940 1.20106 0.91681 0.77372 0.88785 0.88699 0.90334 0.89451 0.89708 0.87927 0.86577 0.89973 0.86589 0.87111 0.73346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.45 13.05 55.50 0.72 -22.72 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.30 -8.10 9.68 -14.94 -0.14 -8.25 16 8 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 9 N -0.55 -13.05 5.29 -10.96 -0.06 -13.11 16 10 C 0.40 8.51 6.59 -10.98 -0.07 8.44 16 11 O -0.59 -14.54 11.58 5.55 0.06 -14.47 16 12 C 0.03 0.54 5.24 -4.98 -0.03 0.52 16 13 N -0.52 -7.94 4.50 -228.48 -1.03 -8.97 16 14 C 0.05 0.72 4.74 -3.93 -0.02 0.70 16 15 C -0.07 -0.98 6.69 37.28 0.25 -0.73 16 16 S -0.27 -4.24 22.40 -107.50 -2.41 -6.65 16 17 C -0.07 -1.03 5.72 37.29 0.21 -0.81 16 18 C 0.09 1.42 1.00 -67.82 -0.07 1.35 16 19 H 0.10 2.10 5.87 -51.93 -0.30 1.79 16 20 C -0.11 -1.59 4.57 -27.88 -0.13 -1.72 16 21 C 0.48 6.99 8.06 36.00 0.29 7.28 16 22 O -0.51 -8.76 14.70 -18.76 -0.28 -9.04 16 23 O -0.52 -6.03 13.42 -39.25 -0.53 -6.56 16 24 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.39 8.86 7.90 -40.82 -0.32 8.54 16 26 H 0.09 1.34 8.01 -51.93 -0.42 0.92 16 27 H 0.10 1.30 5.87 -51.93 -0.30 0.99 16 28 H 0.08 1.14 7.87 -51.93 -0.41 0.73 16 29 H 0.09 1.71 5.90 -51.93 -0.31 1.40 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.12 1.78 5.92 -51.93 -0.31 1.48 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.12 1.73 5.41 -51.93 -0.28 1.45 16 35 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.41 2.99 9.10 45.56 0.41 3.40 16 LS Contribution 303.48 15.07 4.57 4.57 Total: -1.00 -31.34 303.48 -7.20 -38.54 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -3.44 Total: 15.51 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 0.20 Total: 7.36 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.36 Total: -44.80 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.74 Total: -30.07 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -2.41 Total: -6.65 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.34 -7.20 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091131934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.580 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds