Wall clock time and date at job start Tue Mar 31 2020 04:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 119.99937 * 2 1 4 4 H 1.48497 * 109.47368 * 270.00347 * 3 2 1 5 5 H 1.48494 * 109.46956 * 30.00613 * 3 2 1 6 6 H 1.48506 * 109.46900 * 150.00375 * 3 2 1 7 7 C 1.38947 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00388 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00278 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99866 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99810 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.46694 * 181.98297 * 12 10 9 14 14 C 1.46474 * 111.00185 * 297.33272 * 13 12 10 15 15 C 1.53245 * 109.85959 * 197.76833 * 14 13 12 16 16 S 1.81905 * 108.50931 * 297.99746 * 15 14 13 17 17 C 1.81905 * 101.91185 * 51.30416 * 16 15 14 18 18 C 1.46466 * 111.00417 * 63.31345 * 13 12 10 19 19 H 1.08993 * 109.41065 * 282.35726 * 18 13 12 20 20 C 1.53006 * 109.40241 * 42.19373 * 18 13 12 21 21 C 1.50694 * 109.47234 * 185.95529 * 20 18 13 22 22 O 1.20834 * 119.99808 * 358.05522 * 21 20 18 23 23 O 1.34228 * 120.00408 * 178.05736 * 21 20 18 24 24 H 0.96995 * 119.99830 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99746 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.46979 * 61.98472 * 12 10 9 27 27 H 1.08994 * 109.47161 * 301.98334 * 12 10 9 28 28 H 1.08997 * 109.40327 * 317.88902 * 14 13 12 29 29 H 1.09002 * 109.40601 * 77.72787 * 14 13 12 30 30 H 1.08999 * 109.63747 * 57.69999 * 15 14 13 31 31 H 1.08994 * 109.63237 * 178.09510 * 15 14 13 32 32 H 1.08999 * 109.63033 * 188.99201 * 17 16 15 33 33 H 1.08995 * 109.62908 * 68.40378 * 17 16 15 34 34 H 1.08997 * 109.47082 * 305.95671 * 20 18 13 35 35 H 1.09002 * 109.47064 * 65.95661 * 20 18 13 36 36 H 0.96700 * 117.00401 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8630 0.0000 13 7 2.1977 -5.9790 0.0478 14 6 3.0517 -5.9910 -1.1422 15 6 3.7118 -7.3655 -1.2953 16 16 4.7633 -7.6663 0.1582 17 6 3.6160 -7.3264 1.5283 18 6 2.9691 -5.9573 1.2927 19 1 3.7465 -5.1964 1.2239 20 6 2.0383 -5.6288 2.4618 21 6 2.8513 -5.4619 3.7196 22 8 4.0480 -5.6269 3.6918 23 8 2.2462 -5.1301 4.8709 24 1 -0.4849 0.8400 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6438 -4.9364 -0.9069 27 1 0.5911 -4.9052 0.8719 28 1 2.4469 -5.7793 -2.0239 29 1 3.8242 -5.2287 -1.0413 30 1 2.9434 -8.1361 -1.3571 31 1 4.3195 -7.3811 -2.2000 32 1 4.1640 -7.3153 2.4705 33 1 2.8444 -8.0957 1.5592 34 1 1.5020 -4.7038 2.2504 35 1 1.3235 -6.4406 2.5963 36 1 2.8093 -5.0340 5.6511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091131934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:26 Heat of formation + Delta-G solvation = -138.727763 kcal Electronic energy + Delta-G solvation = -21811.277050 eV Core-core repulsion = 18420.913305 eV Total energy + Delta-G solvation = -3390.363745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 4.31 seconds Orbital eigenvalues (eV) -41.71065 -40.71247 -38.48545 -37.14042 -35.89586 -33.96596 -33.37139 -31.99139 -29.55482 -27.90761 -25.84113 -24.55431 -22.77709 -21.71571 -20.69255 -19.76830 -19.18630 -18.15095 -17.90782 -17.56939 -16.99913 -16.49821 -16.43578 -16.12866 -15.83323 -15.59958 -15.06144 -14.67295 -14.59482 -13.88675 -13.80661 -13.64369 -13.48955 -13.12605 -13.03240 -12.98735 -12.82262 -12.47542 -12.44467 -12.16344 -12.04247 -11.81950 -11.50795 -11.42069 -11.00020 -10.65333 -10.00956 -9.22783 -8.65491 -8.48276 -5.97003 0.84651 1.15296 1.33427 1.39037 1.50081 1.58862 1.98012 2.01075 2.26747 2.84746 3.18156 3.21295 3.60760 3.69176 3.96279 4.16813 4.23404 4.26785 4.34655 4.41746 4.49350 4.52326 4.55660 4.70422 4.76293 4.79208 5.05080 5.19562 5.39660 5.58897 5.73836 5.90600 5.98707 6.57632 6.95677 7.11212 7.54128 8.10052 8.67011 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.005424 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.718202 B = 5160.908064 C = 6039.738755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.007 4.007 3 Si 0.984 3.016 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.278 1.278 7 C -0.332 4.332 8 H 0.073 0.927 9 N -0.566 5.566 10 C 0.404 3.596 11 O -0.623 6.623 12 C 0.042 3.958 13 N -0.501 5.501 14 C 0.045 3.955 15 C -0.056 4.056 16 S -0.320 6.320 17 C -0.056 4.056 18 C 0.092 3.908 19 H 0.047 0.953 20 C -0.113 4.113 21 C 0.486 3.514 22 O -0.545 6.545 23 O -0.509 6.509 24 H 0.278 0.722 25 H 0.398 0.602 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.152 0.848 36 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.415 -13.622 3.435 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.207 4.207 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.204 1.204 7 C -0.462 4.462 8 H 0.091 0.909 9 N -0.203 5.203 10 C 0.191 3.809 11 O -0.511 6.511 12 C -0.089 4.089 13 N -0.224 5.224 14 C -0.084 4.084 15 C -0.204 4.204 16 S -0.093 6.093 17 C -0.205 4.205 18 C -0.018 4.018 19 H 0.065 0.935 20 C -0.152 4.152 21 C 0.329 3.671 22 O -0.435 6.435 23 O -0.323 6.323 24 H 0.088 0.912 25 H 0.232 0.768 26 H 0.139 0.861 27 H 0.144 0.856 28 H 0.112 0.888 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.170 0.830 36 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -0.844 -14.334 3.109 14.692 hybrid contribution -0.176 2.414 0.453 2.463 sum -1.020 -11.920 3.562 12.483 Atomic orbital electron populations 1.69641 1.06556 1.29274 1.49985 1.25902 0.96450 1.02054 0.96327 0.85061 0.77877 0.77618 0.78610 1.19713 1.19405 1.20359 1.19565 0.92459 0.84296 1.49879 0.90883 1.42059 1.09384 1.04764 1.64105 1.22134 0.88764 0.87172 0.82861 1.90517 1.15780 1.87691 1.57065 1.22404 0.95138 0.84575 1.06815 1.61822 1.18666 1.40419 1.01472 1.22345 0.97010 0.95998 0.93054 1.23517 1.00557 0.99676 0.96633 1.86944 1.26327 1.90754 1.05239 1.23622 0.99884 0.98714 0.98234 1.21505 0.94984 0.96450 0.88847 0.93456 1.21634 0.98820 1.06897 0.87882 1.23480 0.86666 0.71232 0.85715 1.90707 1.17949 1.48453 1.86431 1.84490 1.46414 1.81120 1.20233 0.91245 0.76809 0.86069 0.85620 0.88805 0.93920 0.87247 0.86455 0.87539 0.87223 0.87532 0.83029 0.71111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.44 13.05 21.66 0.28 -47.16 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 3 Si 0.98 42.35 29.55 68.60 2.03 44.38 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.33 -18.17 9.68 84.04 0.81 -17.36 16 8 H 0.07 4.36 7.16 -2.91 -0.02 4.34 16 9 N -0.57 -26.95 5.29 -306.98 -1.62 -28.57 16 10 C 0.40 17.28 6.59 87.66 0.58 17.86 16 11 O -0.62 -31.84 11.58 -3.06 -0.04 -31.87 16 12 C 0.04 1.22 5.24 85.56 0.45 1.67 16 13 N -0.50 -14.23 4.50 -876.77 -3.95 -18.17 16 14 C 0.05 1.36 4.74 86.47 0.41 1.77 16 15 C -0.06 -1.38 6.69 72.06 0.48 -0.90 16 16 S -0.32 -9.69 22.40 -56.49 -1.27 -10.95 16 17 C -0.06 -1.57 5.72 72.07 0.41 -1.16 16 18 C 0.09 2.87 1.00 45.08 0.04 2.92 16 19 H 0.05 2.04 5.87 -2.39 -0.01 2.02 16 20 C -0.11 -2.91 4.57 29.85 0.14 -2.77 16 21 C 0.49 13.54 8.06 71.23 0.57 14.12 16 22 O -0.54 -18.91 14.70 21.94 0.32 -18.59 16 23 O -0.51 -10.91 13.42 -51.40 -0.69 -11.60 16 24 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 25 H 0.40 17.82 7.90 -92.70 -0.73 17.09 16 26 H 0.12 3.00 8.01 -2.39 -0.02 2.98 16 27 H 0.13 3.00 5.87 -2.39 -0.01 2.98 16 28 H 0.09 2.53 7.87 -2.39 -0.02 2.51 16 29 H 0.04 1.71 5.90 -2.39 -0.01 1.70 16 30 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.11 3.23 5.92 -2.39 -0.01 3.21 16 33 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.11 2.99 5.41 -2.39 -0.01 2.98 16 35 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.43 5.52 9.10 -74.06 -0.67 4.84 16 Total: -1.00 -70.66 303.48 -0.82 -71.48 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.26 Total: 34.79 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 4.37 Total: 16.26 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -5.29 Total: -93.90 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -0.40 Total: -62.06 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: -9.69 SS G_CDS: -1.27 Total: -10.95 kcal Total: -70.66 -0.82 -71.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091131934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.243 kcal (2) G-P(sol) polarization free energy of solvation -70.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.32 seconds