Wall clock time and date at job start Tue Mar 31 2020 03:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 5 5 C 1.35683 * 117.00157 * 269.99991 * 4 2 1 6 6 N 1.29412 * 125.39486 * 359.70275 * 5 4 2 7 7 N 1.37768 * 115.66911 * 179.79458 * 6 5 4 8 8 C 1.29700 * 115.57929 * 0.49634 * 7 6 5 9 9 S 1.76197 * 125.42908 * 179.77467 * 8 7 6 10 10 C 1.81405 * 102.99770 * 359.96209 * 9 8 7 11 11 C 1.53001 * 109.46751 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47086 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47409 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99826 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00007 * 180.02562 * 13 12 11 16 16 N 1.31505 * 119.99939 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99828 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47020 * 89.99742 * 17 15 13 19 19 H 1.48497 * 109.47292 * 210.00167 * 17 15 13 20 20 H 1.48505 * 109.47275 * 330.00345 * 17 15 13 21 21 S 1.76043 * 109.14230 * 359.74386 * 8 7 6 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 1.08996 * 109.46788 * 299.99589 * 10 9 8 30 30 H 1.08993 * 109.46987 * 59.99959 * 10 9 8 31 31 H 1.08994 * 109.47288 * 300.00281 * 11 10 9 32 32 H 1.09004 * 109.46908 * 60.00004 * 11 10 9 33 33 H 1.09000 * 109.47305 * 300.00013 * 12 11 10 34 34 H 1.09004 * 109.47029 * 60.00342 * 12 11 10 35 35 H 0.97003 * 119.99800 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2117 -2.0110 -1.0652 6 7 2.0170 -2.7206 -0.0006 7 7 2.2863 -4.0661 -0.1227 8 6 2.7104 -4.4489 -1.2871 9 16 3.1362 -6.1013 -1.7265 10 6 2.8302 -7.0227 -0.1942 11 6 3.1575 -8.5010 -0.4141 12 6 2.9000 -9.2782 0.8784 13 6 3.2229 -10.7342 0.6620 14 1 3.5768 -11.0714 -0.3010 15 6 3.0666 -11.6357 1.6935 16 7 2.6362 -11.2249 2.8662 17 14 3.4662 -13.4406 1.4249 18 1 4.8926 -13.6865 1.7570 19 1 2.6034 -14.2741 2.3001 20 1 3.2204 -13.7960 0.0042 21 16 2.7922 -3.0546 -2.3587 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 3.4608 -6.6250 0.6009 30 1 1.7823 -6.9210 0.0879 31 1 2.5266 -8.8984 -1.2092 32 1 4.2053 -8.6031 -0.6965 33 1 3.5312 -8.8807 1.6732 34 1 1.8523 -9.1762 1.1611 35 1 2.5258 -11.8592 3.5917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095417529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:42 Heat of formation + Delta-G solvation = -14.732072 kcal Electronic energy + Delta-G solvation = -17187.834115 eV Core-core repulsion = 14245.600098 eV Total energy + Delta-G solvation = -2942.234017 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.31275 -39.62374 -36.40159 -34.43912 -34.08129 -32.33251 -29.45472 -28.28611 -26.65203 -25.40019 -24.21229 -22.27584 -21.53484 -20.78278 -19.03222 -18.57208 -17.55195 -17.36527 -16.58177 -16.33432 -16.10069 -15.62147 -15.44627 -14.75028 -14.59497 -14.39532 -13.79507 -13.73879 -13.55439 -13.41368 -13.11869 -12.92809 -12.75875 -12.43320 -12.34056 -12.24030 -11.97513 -11.82308 -11.68385 -11.42262 -11.30402 -11.21351 -11.11205 -10.55145 -10.43482 -8.95588 -8.19387 -6.30678 -1.04590 -0.57150 -0.19547 0.07773 0.90480 0.96875 1.42805 1.43827 1.55012 1.92341 2.42588 3.03034 3.14627 3.68039 3.79856 3.88353 3.95387 3.99521 4.07571 4.51019 4.60224 4.68757 4.72148 4.77785 4.78673 4.95266 5.10298 5.13555 5.17030 5.50516 5.61166 5.67657 5.83515 6.21751 6.54791 6.86144 7.38850 8.92578 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.036797 B = 0.002618 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.741189 B =10693.118165 C =11287.122837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 C -0.143 4.143 4 O -0.269 6.269 5 C 0.230 3.770 6 N -0.367 5.367 7 N -0.293 5.293 8 C 0.002 3.998 9 S 0.047 5.953 10 C -0.096 4.096 11 C -0.082 4.082 12 C 0.030 3.970 13 C -0.541 4.541 14 H 0.066 0.934 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.260 1.260 21 S 0.201 5.799 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.070 0.930 33 H -0.005 1.005 34 H -0.005 1.005 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 24.523 -11.664 27.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.011 3.989 3 C -0.200 4.200 4 O -0.173 6.173 5 C -0.098 4.098 6 N -0.211 5.211 7 N -0.126 5.126 8 C -0.396 4.396 9 S 0.277 5.723 10 C -0.246 4.246 11 C -0.122 4.122 12 C -0.010 4.010 13 C -0.579 4.579 14 H 0.085 0.915 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.185 1.185 21 S 0.436 5.564 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.014 0.986 34 H 0.014 0.986 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.656 24.340 -12.321 27.288 hybrid contribution -0.531 -0.495 1.913 2.046 sum -1.188 23.845 -10.408 26.045 Atomic orbital electron populations 1.22255 0.93307 1.02315 1.04718 1.22993 0.95840 0.94432 0.85654 1.21944 1.02222 0.90914 1.04945 1.86419 1.80035 1.10720 1.40110 1.27737 0.96554 0.91644 0.93859 1.75228 1.25000 0.97839 1.23054 1.75580 1.16373 1.03264 1.17359 1.31048 1.04712 1.06956 0.96876 1.85434 1.79860 0.88269 1.18719 1.23770 1.05797 0.98491 0.96506 1.21247 1.02001 0.89304 0.99625 1.18979 0.95330 0.94164 0.92485 1.21674 1.44225 0.94051 0.97975 0.91547 1.26000 0.94995 1.04134 0.94856 1.70104 1.47536 1.36555 1.03300 0.85429 0.78187 0.78753 0.78578 1.19796 1.21018 1.18453 1.85385 1.67456 0.93364 1.10157 0.90405 0.94083 0.88451 0.90658 0.87796 0.91592 0.90319 0.89509 0.89520 0.91100 0.91089 0.98641 0.98633 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.53 71.98 0.69 -1.79 16 2 C 0.07 1.15 3.22 30.60 0.10 1.25 16 3 C -0.14 -1.43 9.56 71.98 0.69 -0.74 16 4 O -0.27 -5.65 9.85 -90.01 -0.89 -6.54 16 5 C 0.23 5.82 8.41 130.60 1.10 6.92 16 6 N -0.37 -11.39 10.93 -172.73 -1.89 -13.27 16 7 N -0.29 -9.85 11.62 -55.45 -0.64 -10.50 16 8 C 0.00 0.04 7.82 130.56 1.02 1.06 16 9 S 0.05 1.30 22.16 -56.49 -1.25 0.05 16 10 C -0.10 -3.26 5.54 71.98 0.40 -2.86 16 11 C -0.08 -3.20 5.16 30.59 0.16 -3.04 16 12 C 0.03 1.53 4.97 29.85 0.15 1.68 16 13 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 14 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 15 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 16 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 17 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 S 0.20 4.39 23.39 -56.49 -1.32 3.07 16 22 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.52 7.26 -2.39 -0.02 1.50 16 26 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 33 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -66.59 331.91 2.39 -64.21 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: 1.08 Total: 0.93 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 4.99 Total: -27.11 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.25 Total: -80.47 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.89 Total: -6.54 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -2.57 Total: 3.11 kcal Total: -66.59 2.39 -64.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095417529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.474 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds