Wall clock time and date at job start Tue Mar 31 2020 03:22:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 120.00057 * 2 1
4 4 H 1.48497 * 109.46951 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47164 * 300.00272 * 3 2 1
6 6 H 1.48499 * 109.46879 * 60.00358 * 3 2 1
7 7 C 1.37875 * 119.99668 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99601 * 179.97438 * 7 2 1
9 9 C 1.50701 * 120.00267 * 359.97438 * 7 2 1
10 10 C 1.52998 * 109.47171 * 180.02562 * 9 7 2
11 11 C 1.53000 * 109.47208 * 179.97438 * 10 9 7
12 12 C 1.52998 * 109.47208 * 180.02562 * 11 10 9
13 13 O 1.42896 * 109.47274 * 179.97438 * 12 11 10
14 14 C 1.35916 * 117.00381 * 179.97438 * 13 12 11
15 15 C 1.38749 * 120.03451 * 0.02562 * 14 13 12
16 16 C 1.38135 * 119.98189 * 179.97438 * 15 14 13
17 17 C 1.38359 * 120.05814 * 359.97438 * 16 15 14
18 18 Cl 1.73601 * 119.96592 * 180.27823 * 17 16 15
19 19 C 1.38465 * 120.06991 * 0.02562 * 17 16 15
20 20 Cl 1.73599 * 119.98882 * 180.02562 * 19 17 16
21 21 C 1.38272 * 120.01599 * 359.97438 * 19 17 16
22 22 H 0.97001 * 119.99668 * 359.97438 * 1 2 3
23 23 H 1.08996 * 109.46976 * 60.00327 * 9 7 2
24 24 H 1.09001 * 109.46687 * 299.99847 * 9 7 2
25 25 H 1.09002 * 109.47257 * 59.99818 * 10 9 7
26 26 H 1.08999 * 109.47435 * 300.00128 * 10 9 7
27 27 H 1.08994 * 109.47261 * 59.99504 * 11 10 9
28 28 H 1.09001 * 109.46715 * 299.99730 * 11 10 9
29 29 H 1.09002 * 109.47257 * 59.99876 * 12 11 10
30 30 H 1.08999 * 109.47435 * 300.00186 * 12 11 10
31 31 H 1.08005 * 120.01261 * 0.02562 * 15 14 13
32 32 H 1.08004 * 119.97447 * 180.02562 * 16 15 14
33 33 H 1.08002 * 120.02305 * 179.97438 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8904 2.3964 -1.2124
6 1 1.8905 2.3963 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 6 1.4802 -4.9871 0.0001
12 6 2.4744 -6.1500 0.0008
13 8 1.7599 -7.3876 0.0020
14 6 2.5001 -8.5275 0.0021
15 6 3.8857 -8.4558 0.0017
16 6 4.6369 -9.6150 0.0024
17 6 4.0089 -10.8478 0.0041
18 17 4.9553 -12.3032 0.0122
19 6 2.6262 -10.9220 0.0045
20 17 1.8403 -12.4700 0.0073
21 6 1.8713 -9.7636 0.0038
22 1 -0.4850 0.8401 0.0004
23 1 0.6241 -2.5567 -0.8903
24 1 0.6247 -2.5570 0.8897
25 1 2.8719 -3.6044 0.8894
26 1 2.8719 -3.6044 -0.8905
27 1 0.8532 -5.0451 -0.8895
28 1 0.8539 -5.0445 0.8904
29 1 3.1010 -6.0919 0.8907
30 1 3.1011 -6.0928 -0.8892
31 1 4.3769 -7.4939 0.0016
32 1 5.7155 -9.5591 0.0024
33 1 0.7929 -9.8213 0.0037
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000095734151.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:22:46
Heat of formation + Delta-G solvation = -53.653865 kcal
Electronic energy + Delta-G solvation = -16983.934086 eV
Core-core repulsion = 13867.799035 eV
Total energy + Delta-G solvation = -3116.135051 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 288.042 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.49788 -38.26333 -36.83203 -36.48031 -34.83272 -32.54801 -31.41807 -30.13898
-28.75227 -25.32012 -23.52918 -22.79446 -21.50150 -20.25735 -18.58042 -16.85315
-16.66298 -16.33889 -16.22385 -15.39804 -14.55958 -14.53793 -14.26758 -14.01334
-13.81970 -12.86038 -12.65809 -12.25614 -12.17632 -12.17171 -11.80181 -11.57211
-11.25783 -11.25503 -11.12753 -10.92729 -10.61777 -10.52536 -10.51725 -9.78862
-9.43238 -9.32936 -9.11709 -8.48003 -8.39531 -6.04269 -4.07111 0.62271
0.78869 1.50802 1.86445 3.05648 3.10755 3.28015 3.35724 3.39291
4.25212 4.42245 4.55260 4.67792 4.84279 5.03766 5.08129 5.28354
5.31746 5.37589 5.43611 5.67052 5.81310 5.86032 5.88351 6.09222
6.28211 6.60510 6.75504 6.97830 7.15892 7.62284 7.75193 7.95276
8.36770 9.00199 9.57361 11.07078
Molecular weight = 288.04amu
Principal moments of inertia in cm(-1)
A = 0.045253 B = 0.002284 C = 0.002179
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 618.594440 B =12257.203740 C =12844.743810
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.056 3.944
3 Si 0.892 3.108
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.522 4.522
8 H 0.055 0.945
9 C 0.021 3.979
10 C -0.107 4.107
11 C -0.118 4.118
12 C 0.056 3.944
13 O -0.306 6.306
14 C 0.159 3.841
15 C -0.196 4.196
16 C -0.055 4.055
17 C -0.077 4.077
18 Cl -0.056 7.056
19 C 0.009 3.991
20 Cl -0.045 7.045
21 C -0.140 4.140
22 H 0.260 0.740
23 H 0.017 0.983
24 H 0.017 0.983
25 H 0.050 0.950
26 H 0.051 0.949
27 H 0.070 0.930
28 H 0.070 0.930
29 H 0.065 0.935
30 H 0.065 0.935
31 H 0.146 0.854
32 H 0.145 0.855
33 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.830 -24.236 0.011 25.470
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.145 4.145
3 Si 0.720 3.280
4 H -0.197 1.197
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.560 4.560
8 H 0.074 0.926
9 C -0.016 4.016
10 C -0.145 4.145
11 C -0.155 4.155
12 C -0.018 4.018
13 O -0.218 6.218
14 C 0.112 3.888
15 C -0.215 4.215
16 C -0.074 4.074
17 C -0.105 4.105
18 Cl -0.027 7.027
19 C -0.019 4.019
20 Cl -0.016 7.016
21 C -0.160 4.160
22 H 0.070 0.930
23 H 0.036 0.964
24 H 0.036 0.964
25 H 0.069 0.931
26 H 0.069 0.931
27 H 0.089 0.911
28 H 0.089 0.911
29 H 0.083 0.917
30 H 0.083 0.917
31 H 0.164 0.836
32 H 0.163 0.837
33 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 7.480 -24.346 0.012 25.469
hybrid contribution 0.644 0.796 0.000 1.024
sum 8.124 -23.549 0.012 24.911
Atomic orbital electron populations
1.69976 1.06066 1.26560 1.50791 1.25038 0.94862 0.99326 0.95302
0.86537 0.80074 0.83772 0.77623 1.19750 1.20988 1.20983 1.21278
0.93051 0.91049 1.50650 0.92631 1.19094 0.93950 0.91103 0.97463
1.21589 0.99296 0.92985 1.00583 1.21721 0.98013 0.92342 1.03449
1.23236 0.96291 0.80832 1.01441 1.86160 1.35901 1.12748 1.87030
1.18910 0.89856 0.87004 0.93047 1.21437 0.92789 0.99932 1.07307
1.20817 1.00764 0.89274 0.96570 1.20570 0.89880 0.89014 1.10998
1.98375 1.71754 1.35526 1.97081 1.20375 0.90567 0.87815 1.03103
1.98396 1.80233 1.26358 1.96582 1.20199 1.01238 0.87845 1.06676
0.92999 0.96429 0.96437 0.93074 0.93068 0.91132 0.91137 0.91713
0.91706 0.83590 0.83742 0.83149
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16
2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16
3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16
4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16
5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16
8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16
9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16
10 C -0.11 -2.02 5.15 -26.73 -0.14 -2.16 16
11 C -0.12 -1.84 5.58 -26.73 -0.15 -1.99 16
12 C 0.06 0.70 4.74 37.16 0.18 0.88 16
13 O -0.31 -3.98 10.14 -19.48 -0.20 -4.18 16
14 C 0.16 1.81 6.69 -39.23 -0.26 1.55 16
15 C -0.20 -1.90 9.04 -39.43 -0.36 -2.26 16
16 C -0.06 -0.49 9.82 -39.57 -0.39 -0.88 16
17 C -0.08 -0.76 6.32 -39.45 -0.25 -1.01 16
18 Cl -0.06 -0.52 27.95 -51.86 -1.45 -1.97 16
19 C 0.01 0.09 6.32 -39.49 -0.25 -0.16 16
20 Cl -0.04 -0.43 27.95 -51.86 -1.45 -1.88 16
21 C -0.14 -1.50 9.77 -39.41 -0.38 -1.88 16
22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16
28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16
29 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16
30 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16
31 H 0.15 1.21 6.30 -52.48 -0.33 0.88 16
32 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16
33 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16
LS Contribution 315.80 15.07 4.76 4.76
Total: -1.00 -29.39 315.80 -9.22 -38.61
By element:
Atomic # 1 Polarization: -0.88 SS G_CDS: -4.05 Total: -4.93 kcal
Atomic # 6 Polarization: -18.26 SS G_CDS: -2.55 Total: -20.81 kcal
Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.88 kcal
Atomic # 8 Polarization: -3.98 SS G_CDS: -0.20 Total: -4.18 kcal
Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal
Atomic # 17 Polarization: -0.96 SS G_CDS: -2.90 Total: -3.85 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -29.39 -9.22 -38.61 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000095734151.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.045 kcal
(2) G-P(sol) polarization free energy of solvation -29.386 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.430 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.654 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds