Wall clock time and date at job start Tue Mar 31 2020 03:22:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 120.00057 * 2 1
4 4 H 1.48497 * 109.46951 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47164 * 300.00272 * 3 2 1
6 6 H 1.48499 * 109.46879 * 60.00358 * 3 2 1
7 7 C 1.37875 * 119.99668 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99601 * 179.97438 * 7 2 1
9 9 C 1.50701 * 120.00267 * 359.97438 * 7 2 1
10 10 C 1.52998 * 109.47171 * 180.02562 * 9 7 2
11 11 C 1.53000 * 109.47208 * 179.97438 * 10 9 7
12 12 C 1.52998 * 109.47208 * 180.02562 * 11 10 9
13 13 O 1.42896 * 109.47274 * 179.97438 * 12 11 10
14 14 C 1.35916 * 117.00381 * 179.97438 * 13 12 11
15 15 C 1.38749 * 120.03451 * 0.02562 * 14 13 12
16 16 C 1.38135 * 119.98189 * 179.97438 * 15 14 13
17 17 C 1.38359 * 120.05814 * 359.97438 * 16 15 14
18 18 Cl 1.73601 * 119.96592 * 180.27823 * 17 16 15
19 19 C 1.38465 * 120.06991 * 0.02562 * 17 16 15
20 20 Cl 1.73599 * 119.98882 * 180.02562 * 19 17 16
21 21 C 1.38272 * 120.01599 * 359.97438 * 19 17 16
22 22 H 0.97001 * 119.99668 * 359.97438 * 1 2 3
23 23 H 1.08996 * 109.46976 * 60.00327 * 9 7 2
24 24 H 1.09001 * 109.46687 * 299.99847 * 9 7 2
25 25 H 1.09002 * 109.47257 * 59.99818 * 10 9 7
26 26 H 1.08999 * 109.47435 * 300.00128 * 10 9 7
27 27 H 1.08994 * 109.47261 * 59.99504 * 11 10 9
28 28 H 1.09001 * 109.46715 * 299.99730 * 11 10 9
29 29 H 1.09002 * 109.47257 * 59.99876 * 12 11 10
30 30 H 1.08999 * 109.47435 * 300.00186 * 12 11 10
31 31 H 1.08005 * 120.01261 * 0.02562 * 15 14 13
32 32 H 1.08004 * 119.97447 * 180.02562 * 16 15 14
33 33 H 1.08002 * 120.02305 * 179.97438 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8904 2.3964 -1.2124
6 1 1.8905 2.3963 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 6 1.4802 -4.9871 0.0001
12 6 2.4744 -6.1500 0.0008
13 8 1.7599 -7.3876 0.0020
14 6 2.5001 -8.5275 0.0021
15 6 3.8857 -8.4558 0.0017
16 6 4.6369 -9.6150 0.0024
17 6 4.0089 -10.8478 0.0041
18 17 4.9553 -12.3032 0.0122
19 6 2.6262 -10.9220 0.0045
20 17 1.8403 -12.4700 0.0073
21 6 1.8713 -9.7636 0.0038
22 1 -0.4850 0.8401 0.0004
23 1 0.6241 -2.5567 -0.8903
24 1 0.6247 -2.5570 0.8897
25 1 2.8719 -3.6044 0.8894
26 1 2.8719 -3.6044 -0.8905
27 1 0.8532 -5.0451 -0.8895
28 1 0.8539 -5.0445 0.8904
29 1 3.1010 -6.0919 0.8907
30 1 3.1011 -6.0928 -0.8892
31 1 4.3769 -7.4939 0.0016
32 1 5.7155 -9.5591 0.0024
33 1 0.7929 -9.8213 0.0037
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000095734151.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:22:46
Heat of formation + Delta-G solvation = -67.961984 kcal
Electronic energy + Delta-G solvation = -16984.554533 eV
Core-core repulsion = 13867.799035 eV
Total energy + Delta-G solvation = -3116.755498 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 288.042 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.32938 -39.11125 -37.58407 -37.29317 -36.42525 -34.41445 -32.23662 -31.20743
-30.13021 -26.92674 -24.58141 -23.84117 -22.68240 -21.78650 -19.44267 -18.44401
-17.65632 -17.40015 -17.34721 -16.49848 -16.17360 -15.71017 -15.14211 -14.86761
-14.86387 -14.47285 -13.76161 -13.57534 -13.53615 -13.24718 -12.93547 -12.84044
-12.62932 -12.34279 -12.29282 -12.21175 -12.00254 -11.82328 -11.60858 -11.33880
-11.33191 -11.11076 -10.55183 -10.08048 -9.28440 -8.19429 -6.30448 -0.14157
0.02654 0.74770 1.10880 1.41385 1.41704 1.54767 2.14139 2.34417
2.42444 3.14282 3.53728 3.79743 3.90444 3.99396 4.00313 4.16176
4.35506 4.45222 4.55953 4.64186 4.69627 4.80075 4.94046 5.08641
5.12275 5.21826 5.27441 5.32449 5.54947 5.76688 5.87588 6.24133
6.26450 6.88036 7.39256 8.92740
Molecular weight = 288.04amu
Principal moments of inertia in cm(-1)
A = 0.045253 B = 0.002284 C = 0.002179
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 618.594440 B =12257.203740 C =12844.743810
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.004 4.004
3 Si 0.965 3.035
4 H -0.259 1.259
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.541 4.541
8 H 0.064 0.936
9 C 0.020 3.980
10 C -0.093 4.093
11 C -0.111 4.111
12 C 0.064 3.936
13 O -0.323 6.323
14 C 0.142 3.858
15 C -0.192 4.192
16 C -0.051 4.051
17 C -0.082 4.082
18 Cl -0.052 7.052
19 C 0.001 3.999
20 Cl -0.043 7.043
21 C -0.147 4.147
22 H 0.263 0.737
23 H -0.009 1.009
24 H -0.010 1.010
25 H 0.061 0.939
26 H 0.061 0.939
27 H 0.061 0.939
28 H 0.061 0.939
29 H 0.082 0.918
30 H 0.082 0.918
31 H 0.164 0.836
32 H 0.170 0.830
33 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.087 -24.523 0.011 26.516
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.202 4.202
3 Si 0.790 3.210
4 H -0.183 1.183
5 H -0.206 1.206
6 H -0.205 1.205
7 C -0.579 4.579
8 H 0.082 0.918
9 C -0.017 4.017
10 C -0.131 4.131
11 C -0.149 4.149
12 C -0.010 4.010
13 O -0.237 6.237
14 C 0.095 3.905
15 C -0.210 4.210
16 C -0.069 4.069
17 C -0.110 4.110
18 Cl -0.023 7.023
19 C -0.027 4.027
20 Cl -0.014 7.014
21 C -0.166 4.166
22 H 0.072 0.928
23 H 0.009 0.991
24 H 0.009 0.991
25 H 0.080 0.920
26 H 0.080 0.920
27 H 0.080 0.920
28 H 0.080 0.920
29 H 0.100 0.900
30 H 0.100 0.900
31 H 0.182 0.818
32 H 0.188 0.812
33 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges 9.750 -24.655 0.012 26.513
hybrid contribution -0.082 0.805 0.000 0.809
sum 9.668 -23.851 0.013 25.736
Atomic orbital electron populations
1.70114 1.07888 1.27673 1.51936 1.26020 0.95762 1.03517 0.94880
0.85394 0.79213 0.78760 0.77656 1.18275 1.20560 1.20549 1.21770
0.93716 0.92299 1.50099 0.91772 1.19039 0.94601 0.93244 0.94853
1.21342 0.98026 0.92196 1.01537 1.21496 0.98286 0.92456 1.02671
1.23047 0.95104 0.79715 1.03167 1.86094 1.36666 1.13222 1.87706
1.19057 0.90642 0.86434 0.94387 1.21647 0.92048 1.01021 1.06321
1.21106 1.02008 0.88478 0.95355 1.20765 0.89845 0.89697 1.10702
1.98378 1.71505 1.35359 1.97034 1.20452 0.90934 0.87827 1.03509
1.98393 1.80284 1.26151 1.96594 1.20276 1.01560 0.87977 1.06825
0.92844 0.99101 0.99111 0.92029 0.92021 0.92009 0.92018 0.89974
0.89963 0.81848 0.81215 0.82972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -56.73 13.29 21.45 0.28 -56.45 16
2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16
3 Si 0.97 43.50 29.54 68.60 2.03 45.53 16
4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16
5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16
6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
7 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16
8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16
9 C 0.02 1.01 4.97 29.85 0.15 1.16 16
10 C -0.09 -3.46 5.15 30.59 0.16 -3.30 16
11 C -0.11 -3.42 5.58 30.59 0.17 -3.25 16
12 C 0.06 1.46 4.74 71.98 0.34 1.81 16
13 O -0.32 -8.03 10.14 -92.61 -0.94 -8.97 16
14 C 0.14 3.01 6.69 22.50 0.15 3.16 16
15 C -0.19 -3.22 9.04 22.37 0.20 -3.02 16
16 C -0.05 -0.77 9.82 22.27 0.22 -0.55 16
17 C -0.08 -1.48 6.32 22.35 0.14 -1.34 16
18 Cl -0.05 -0.87 27.95 -2.72 -0.08 -0.95 16
19 C 0.00 0.01 6.32 22.33 0.14 0.15 16
20 Cl -0.04 -0.80 27.95 -2.72 -0.08 -0.88 16
21 C -0.15 -3.02 9.77 22.38 0.22 -2.80 16
22 H 0.26 14.94 8.31 -92.71 -0.77 14.16 16
23 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16
24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16
25 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16
26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16
27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
29 H 0.08 1.61 7.66 -2.39 -0.02 1.59 16
30 H 0.08 1.61 7.66 -2.39 -0.02 1.59 16
31 H 0.16 2.12 6.30 -2.91 -0.02 2.10 16
32 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16
33 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16
Total: -1.00 -63.33 315.80 4.92 -58.42
By element:
Atomic # 1 Polarization: -0.25 SS G_CDS: 1.11 Total: 0.86 kcal
Atomic # 6 Polarization: -40.15 SS G_CDS: 2.59 Total: -37.57 kcal
Atomic # 7 Polarization: -56.73 SS G_CDS: 0.28 Total: -56.45 kcal
Atomic # 8 Polarization: -8.03 SS G_CDS: -0.94 Total: -8.97 kcal
Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal
Atomic # 17 Polarization: -1.67 SS G_CDS: -0.15 Total: -1.83 kcal
Total: -63.33 4.92 -58.42 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000095734151.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.547 kcal
(2) G-P(sol) polarization free energy of solvation -63.331 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.878 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.415 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.962 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds