Wall clock time and date at job start Tue Mar 31 2020 03:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35958 * 116.99807 * 180.02562 * 11 10 9 13 13 C 1.38650 * 120.05461 * 359.72596 * 12 11 10 14 14 C 1.38265 * 119.95632 * 179.76745 * 13 12 11 15 15 Br 1.89100 * 119.96311 * 180.23518 * 14 13 12 16 16 C 1.38348 * 120.07733 * 0.48440 * 14 13 12 17 17 C 1.38248 * 120.11305 * 359.76981 * 16 14 13 18 18 C 1.38336 * 120.03944 * 0.02562 * 17 16 14 19 19 F 1.35100 * 120.03733 * 179.97438 * 18 17 16 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.08002 * 120.02455 * 0.02562 * 13 12 11 26 26 H 1.08004 * 119.94590 * 179.74720 * 16 14 13 27 27 H 1.08002 * 119.98142 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 8 1.5308 -4.8996 0.0020 12 6 2.2713 -6.0398 0.0024 13 6 3.6560 -5.9686 -0.0035 14 6 4.4071 -7.1294 0.0018 15 35 6.2956 -7.0324 0.0006 16 6 3.7786 -8.3619 0.0028 17 6 2.3981 -8.4365 0.0033 18 6 1.6420 -7.2781 0.0023 19 9 0.2929 -7.3511 0.0022 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 4.1476 -5.0069 -0.0079 26 1 4.3674 -9.2673 0.0028 27 1 1.9097 -9.3998 0.0036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095738536.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:50 Heat of formation + Delta-G solvation = -68.238767 kcal Electronic energy + Delta-G solvation = -14574.344015 eV Core-core repulsion = 11678.979359 eV Total energy + Delta-G solvation = -2895.364656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 287.990 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.73288 -39.87723 -37.45039 -33.47165 -32.20693 -30.82377 -29.93200 -28.71433 -25.28462 -23.04539 -22.27016 -20.82848 -18.30320 -17.04714 -16.71433 -16.12147 -16.02940 -14.94235 -14.92062 -14.62702 -14.42379 -13.69294 -13.02915 -13.00305 -12.38765 -12.01212 -11.99264 -11.58892 -10.99206 -10.94085 -10.67945 -10.63753 -10.44531 -9.98379 -9.75405 -9.37865 -8.94883 -8.49295 -8.12014 -6.14155 -4.19736 0.79925 1.12952 1.42975 3.26588 3.29960 3.31945 3.33821 3.44964 4.20218 4.37342 4.54900 4.86921 4.95729 5.22225 5.36862 5.49413 5.77161 5.86821 5.88191 5.96586 6.00600 6.46189 6.54691 7.35239 7.56074 7.64306 7.88639 8.16815 8.85374 9.44978 10.97254 Molecular weight = 287.99amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.004565 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.398459 B = 6132.179890 C = 7608.131269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.060 3.940 11 O -0.301 6.301 12 C 0.122 3.878 13 C -0.161 4.161 14 C -0.061 4.061 15 Br -0.046 7.046 16 C -0.114 4.114 17 C -0.112 4.112 18 C 0.074 3.926 19 F -0.127 7.127 20 H 0.265 0.735 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.151 0.849 26 H 0.140 0.860 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.057 -17.956 0.002 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.013 4.013 11 O -0.214 6.214 12 C 0.072 3.928 13 C -0.182 4.182 14 C -0.141 4.141 15 Br 0.039 6.961 16 C -0.135 4.135 17 C -0.132 4.132 18 C 0.054 3.946 19 F -0.105 7.105 20 H 0.074 0.926 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.168 0.832 26 H 0.158 0.842 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.335 -17.738 0.001 21.050 hybrid contribution 0.003 1.003 0.001 1.003 sum 11.338 -16.734 0.002 20.214 Atomic orbital electron populations 1.69961 1.06128 1.27208 1.49323 1.24986 0.94908 0.99413 0.94780 0.86532 0.79499 0.82501 0.78766 1.20042 1.21077 1.20038 1.20907 0.93033 0.90075 1.52764 0.92306 1.19134 0.94097 0.88747 0.99104 1.23523 0.97418 0.80305 1.00071 1.86301 1.35759 1.12863 1.86462 1.19118 0.90106 0.87466 0.96095 1.21215 0.92001 0.99325 1.05615 1.21539 0.90518 0.95526 1.06478 1.96719 1.02643 1.99099 1.97628 1.20752 0.93633 0.96434 1.02636 1.20932 0.93514 0.97197 1.01557 1.17131 0.77679 0.91743 1.08043 1.91524 1.28107 1.96939 1.93979 0.92557 0.95231 0.95228 0.92621 0.92616 0.83173 0.84197 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 15 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.53 -14.53 9.11 -34.44 -0.31 -14.85 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 15 10 C 0.06 1.25 4.68 37.16 0.17 1.43 15 11 O -0.30 -6.09 10.00 -19.61 -0.20 -6.28 15 12 C 0.12 2.04 6.69 -39.18 -0.26 1.77 15 13 C -0.16 -2.36 8.78 -39.42 -0.35 -2.71 15 14 C -0.06 -0.76 6.22 -39.53 -0.25 -1.01 15 15 Br -0.05 -0.51 33.70 -68.01 -2.29 -2.81 15 16 C -0.11 -1.23 9.78 -39.54 -0.39 -1.61 15 17 C -0.11 -1.27 10.02 -39.54 -0.40 -1.67 15 18 C 0.07 1.12 7.31 -39.30 -0.29 0.83 15 19 F -0.13 -2.08 17.11 2.25 0.04 -2.05 15 20 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 21 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.06 1.08 7.65 -51.93 -0.40 0.68 15 24 H 0.06 1.08 7.67 -51.93 -0.40 0.68 15 25 H 0.15 2.18 6.30 -52.49 -0.33 1.85 15 26 H 0.14 1.12 8.06 -52.48 -0.42 0.70 15 27 H 0.15 1.22 8.06 -52.49 -0.42 0.79 15 LS Contribution 268.42 15.07 4.05 4.05 Total: -1.00 -29.24 268.42 -7.36 -36.60 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: -2.36 Total: -4.39 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.31 Total: -15.65 kcal Atomic # 7 Polarization: -26.24 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.20 Total: -6.28 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.29 Total: -2.81 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.24 -7.36 -36.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095738536.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.643 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds