Wall clock time and date at job start Tue Mar 31 2020 03:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35958 * 116.99807 * 180.02562 * 11 10 9 13 13 C 1.38650 * 120.05461 * 359.72596 * 12 11 10 14 14 C 1.38265 * 119.95632 * 179.76745 * 13 12 11 15 15 Br 1.89100 * 119.96311 * 180.23518 * 14 13 12 16 16 C 1.38348 * 120.07733 * 0.48440 * 14 13 12 17 17 C 1.38248 * 120.11305 * 359.76981 * 16 14 13 18 18 C 1.38336 * 120.03944 * 0.02562 * 17 16 14 19 19 F 1.35100 * 120.03733 * 179.97438 * 18 17 16 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.08002 * 120.02455 * 0.02562 * 13 12 11 26 26 H 1.08004 * 119.94590 * 179.74720 * 16 14 13 27 27 H 1.08002 * 119.98142 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 8 1.5308 -4.8996 0.0020 12 6 2.2713 -6.0398 0.0024 13 6 3.6560 -5.9686 -0.0035 14 6 4.4071 -7.1294 0.0018 15 35 6.2956 -7.0324 0.0006 16 6 3.7786 -8.3619 0.0028 17 6 2.3981 -8.4365 0.0033 18 6 1.6420 -7.2781 0.0023 19 9 0.2929 -7.3511 0.0022 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 4.1476 -5.0069 -0.0079 26 1 4.3674 -9.2673 0.0028 27 1 1.9097 -9.3998 0.0036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095738536.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:50 Heat of formation + Delta-G solvation = -84.753266 kcal Electronic energy + Delta-G solvation = -14575.060138 eV Core-core repulsion = 11678.979359 eV Total energy + Delta-G solvation = -2896.080778 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 287.990 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.93510 -41.12349 -38.70733 -35.51654 -33.26342 -32.47602 -31.22107 -29.84942 -27.12120 -24.46763 -23.39643 -22.50933 -19.63819 -18.54551 -17.90078 -17.85627 -17.39971 -16.55801 -16.35621 -15.96467 -15.54053 -15.01985 -14.34916 -14.34708 -14.18001 -13.55160 -13.33348 -12.95099 -12.74867 -12.52680 -12.31603 -11.95152 -11.67472 -11.45899 -11.43817 -11.35904 -10.63014 -9.98792 -9.30575 -8.27846 -6.42138 -0.25304 0.07845 0.46005 1.40792 1.44714 1.52641 2.05691 2.29026 2.42181 3.06786 3.09016 3.56756 3.82723 3.93994 4.18170 4.19542 4.40113 4.47082 4.68226 4.81520 4.94539 4.98504 5.26436 5.42270 5.46913 5.68488 6.02878 6.25556 6.72455 7.28336 8.85087 Molecular weight = 287.99amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.004565 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.398459 B = 6132.179890 C = 7608.131269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.028 3.972 10 C 0.080 3.920 11 O -0.332 6.332 12 C 0.085 3.915 13 C -0.165 4.165 14 C -0.066 4.066 15 Br -0.028 7.028 16 C -0.094 4.094 17 C -0.094 4.094 18 C 0.055 3.945 19 F -0.142 7.142 20 H 0.267 0.733 21 H -0.002 1.002 22 H -0.002 1.002 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.147 0.853 26 H 0.179 0.821 27 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.493 -19.347 0.003 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.092 0.908 9 C -0.009 4.009 10 C 0.006 3.994 11 O -0.246 6.246 12 C 0.037 3.963 13 C -0.185 4.185 14 C -0.146 4.146 15 Br 0.057 6.943 16 C -0.114 4.114 17 C -0.113 4.113 18 C 0.034 3.966 19 F -0.121 7.121 20 H 0.076 0.924 21 H 0.017 0.983 22 H 0.017 0.983 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.164 0.836 26 H 0.196 0.804 27 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 13.794 -19.159 0.002 23.608 hybrid contribution -0.700 1.254 0.000 1.437 sum 13.094 -17.904 0.002 22.181 Atomic orbital electron populations 1.70114 1.08109 1.28352 1.50460 1.26045 0.95793 1.03721 0.94083 0.85339 0.78117 0.77147 0.79494 1.18762 1.20867 1.18754 1.21364 0.93922 0.90841 1.52385 0.90833 1.18963 0.94538 0.91298 0.96095 1.23037 0.95619 0.79601 1.01141 1.86193 1.36855 1.13578 1.87977 1.19410 0.91060 0.86682 0.99117 1.21203 0.91227 1.00217 1.05898 1.21759 0.91514 0.95507 1.05832 1.96747 1.00879 1.99122 1.97530 1.21247 0.93576 0.97053 0.99500 1.21353 0.93592 0.97253 0.99073 1.17580 0.77399 0.92408 1.09178 1.91482 1.29319 1.97010 1.94269 0.92410 0.98321 0.98315 0.91463 0.91460 0.83576 0.80366 0.79697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.45 0.28 -56.42 15 2 C 0.00 0.13 5.46 84.66 0.46 0.59 15 3 Si 0.98 43.19 29.54 68.60 2.03 45.22 15 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 15 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 6 H -0.26 -11.06 7.11 99.48 0.71 -10.36 15 7 C -0.55 -30.61 9.11 25.60 0.23 -30.37 15 8 H 0.07 3.79 7.74 -2.91 -0.02 3.77 15 9 C 0.03 1.54 5.34 29.85 0.16 1.70 15 10 C 0.08 3.42 4.68 71.98 0.34 3.76 15 11 O -0.33 -14.04 10.00 -93.08 -0.93 -14.97 15 12 C 0.08 2.87 6.69 22.53 0.15 3.02 15 13 C -0.16 -4.70 8.78 22.37 0.20 -4.50 15 14 C -0.07 -1.48 6.22 22.30 0.14 -1.35 15 15 Br -0.03 -0.55 33.70 -20.37 -0.69 -1.24 15 16 C -0.09 -1.64 9.78 22.30 0.22 -1.43 15 17 C -0.09 -1.81 10.02 22.30 0.22 -1.59 15 18 C 0.05 1.60 7.31 22.45 0.16 1.77 15 19 F -0.14 -4.72 17.11 44.97 0.77 -3.95 15 20 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 21 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 15 22 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 15 23 H 0.07 2.66 7.65 -2.39 -0.02 2.65 15 24 H 0.07 2.67 7.67 -2.39 -0.02 2.65 15 25 H 0.15 4.18 6.30 -2.91 -0.02 4.16 15 26 H 0.18 1.82 8.06 -2.91 -0.02 1.80 15 27 H 0.19 2.18 8.06 -2.91 -0.02 2.16 15 Total: -1.00 -65.64 268.42 4.93 -60.70 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: 1.19 Total: -0.95 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 2.28 Total: -28.39 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.28 Total: -56.42 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.93 Total: -14.97 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.77 Total: -3.95 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -0.69 Total: -1.24 kcal Total: -65.64 4.93 -60.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095738536.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.051 kcal (2) G-P(sol) polarization free energy of solvation -65.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds