Wall clock time and date at job start Tue Mar 31 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00062 * 3 2 1 5 5 H 1.48508 * 109.47285 * 30.00279 * 3 2 1 6 6 H 1.48499 * 109.47170 * 150.00222 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.35925 * 116.99722 * 180.02562 * 13 12 11 15 15 C 1.38692 * 120.05493 * 359.72114 * 14 13 12 16 16 C 1.38264 * 119.94575 * 179.77029 * 15 14 13 17 17 Cl 1.73600 * 119.97291 * 180.25687 * 16 15 14 18 18 C 1.38393 * 120.04918 * 0.50823 * 16 15 14 19 19 C 1.38229 * 120.10535 * 359.74784 * 18 16 15 20 20 C 1.38264 * 120.05613 * 359.97438 * 19 18 16 21 21 Cl 1.73597 * 120.02560 * 179.97438 * 20 19 18 22 22 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 24 24 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 25 25 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 28 28 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 29 29 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 30 30 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 31 31 H 1.08005 * 120.02764 * 0.02562 * 15 14 13 32 32 H 1.07999 * 119.94611 * 179.72093 * 18 16 15 33 33 H 1.07998 * 119.97278 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 8 1.7601 -7.3875 -0.0018 14 6 2.5004 -8.5275 -0.0018 15 6 3.8855 -8.4562 -0.0077 16 6 4.6364 -9.6171 -0.0029 17 17 6.3701 -9.5287 -0.0034 18 6 4.0069 -10.8496 -0.0028 19 6 2.6265 -10.9231 -0.0024 20 6 1.8714 -9.7649 -0.0014 21 17 0.1379 -9.8582 -0.0015 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6248 -2.5570 0.8898 25 1 2.8726 -3.6046 0.8877 26 1 2.8713 -3.6039 -0.8923 27 1 0.8528 -5.0446 -0.8905 28 1 0.8546 -5.0450 0.8894 29 1 3.1007 -6.0922 -0.8922 30 1 3.1019 -6.0922 0.8878 31 1 4.3772 -7.4945 -0.0118 32 1 4.5950 -11.7554 -0.0036 33 1 2.1375 -11.8860 -0.0028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095738569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:40 Heat of formation + Delta-G solvation = -52.540402 kcal Electronic energy + Delta-G solvation = -17200.497705 eV Core-core repulsion = 14084.410938 eV Total energy + Delta-G solvation = -3116.086768 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 288.042 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.49436 -38.09795 -36.96644 -36.33897 -34.82291 -32.51111 -31.07938 -30.40220 -28.73674 -25.33434 -23.36605 -22.81066 -21.51672 -20.22197 -18.59325 -16.74478 -16.58997 -16.35060 -16.19487 -15.47474 -14.51389 -14.49238 -14.42187 -13.92201 -13.52566 -12.70231 -12.69718 -12.58554 -12.24000 -11.86517 -11.79377 -11.41780 -11.31746 -11.13948 -11.04639 -10.93409 -10.60872 -10.54128 -10.50806 -9.75161 -9.40027 -9.22054 -9.10301 -8.48629 -8.36689 -6.01607 -4.04453 0.57067 0.87308 1.65324 1.96728 2.94813 3.09705 3.30793 3.37159 3.40256 4.29926 4.44439 4.60378 4.60790 4.92660 5.04420 5.07221 5.18771 5.34224 5.43202 5.48656 5.66747 5.74350 5.92265 5.92354 6.13619 6.31730 6.64385 6.79243 6.98888 7.14522 7.65001 7.78430 7.97995 8.39550 9.02626 9.59800 11.09712 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.019404 B = 0.002992 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.643034 B = 9356.368945 C =10767.960253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.055 3.945 13 O -0.296 6.296 14 C 0.163 3.837 15 C -0.195 4.195 16 C 0.010 3.990 17 Cl -0.060 7.060 18 C -0.145 4.145 19 C -0.061 4.061 20 C -0.073 4.073 21 Cl -0.048 7.048 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.694 -24.464 -0.006 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.020 4.020 13 O -0.208 6.208 14 C 0.114 3.886 15 C -0.214 4.214 16 C -0.018 4.018 17 Cl -0.031 7.031 18 C -0.164 4.164 19 C -0.079 4.079 20 C -0.101 4.101 21 Cl -0.019 7.019 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.325 -24.288 -0.002 25.369 hybrid contribution 0.692 1.066 -0.010 1.271 sum 8.017 -23.222 -0.012 24.567 Atomic orbital electron populations 1.69965 1.06061 1.26647 1.50733 1.25032 0.94855 0.99290 0.95307 0.86594 0.79837 0.83460 0.78111 1.20652 1.21203 1.19874 1.21248 0.93024 0.91076 1.50737 0.92684 1.19085 0.93934 0.91062 0.97460 1.21593 0.99297 0.92997 1.00577 1.21707 0.97954 0.92232 1.03495 1.23261 0.96344 0.80906 1.01444 1.86254 1.35182 1.12516 1.86850 1.18589 0.89168 0.86735 0.94074 1.21167 0.92015 0.99457 1.08793 1.20726 0.85057 0.94434 1.01534 1.98393 1.09348 1.98724 1.96635 1.20870 0.93896 0.96665 1.04982 1.20843 0.92680 0.97127 0.97299 1.20311 0.86314 0.92127 1.11304 1.98388 1.08047 1.98506 1.96938 0.92961 0.96440 0.96425 0.93083 0.93077 0.91102 0.91106 0.91714 0.91704 0.83258 0.83988 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.09 5.15 -26.73 -0.14 -2.23 16 11 C -0.12 -1.91 5.58 -26.73 -0.15 -2.06 16 12 C 0.05 0.74 4.74 37.16 0.18 0.91 16 13 O -0.30 -4.14 9.60 -19.51 -0.19 -4.33 16 14 C 0.16 2.00 6.68 -39.20 -0.26 1.74 16 15 C -0.19 -2.12 8.82 -39.40 -0.35 -2.47 16 16 C 0.01 0.09 6.32 -39.51 -0.25 -0.16 16 17 Cl -0.06 -0.55 28.95 -51.86 -1.50 -2.05 16 18 C -0.14 -1.19 9.83 -39.53 -0.39 -1.58 16 19 C -0.06 -0.52 9.82 -39.57 -0.39 -0.90 16 20 C -0.07 -0.81 6.33 -39.36 -0.25 -1.06 16 21 Cl -0.05 -0.55 28.50 -51.86 -1.48 -2.03 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.79 7.65 -51.93 -0.40 0.40 16 30 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 31 H 0.15 1.52 6.30 -52.48 -0.33 1.19 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -29.99 316.66 -9.27 -39.27 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -4.05 Total: -5.11 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -2.55 Total: -20.89 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.19 Total: -4.33 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -2.98 Total: -4.08 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.99 -9.27 -39.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095738569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.273 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds