Wall clock time and date at job start Tue Mar 31 2020 02:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99938 * 2 1 4 4 H 1.48505 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47033 * 300.00012 * 3 2 1 6 6 H 1.48500 * 109.47377 * 60.00188 * 3 2 1 7 7 C 1.38807 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00217 * 197.40880 * 7 2 1 9 9 N 1.36942 * 120.00079 * 17.40776 * 7 2 1 10 10 C 1.46917 * 120.62360 * 27.76774 * 9 7 2 11 11 C 1.53218 * 108.76327 * 126.09928 * 10 9 7 12 12 C 1.52848 * 109.35732 * 54.24792 * 11 10 9 13 13 C 1.54291 * 109.34523 * 179.05988 * 12 11 10 14 14 C 1.55344 * 102.17346 * 261.61414 * 13 12 11 15 15 H 1.08999 * 111.12214 * 83.98299 * 14 13 12 16 16 C 1.50700 * 111.12474 * 208.09398 * 14 13 12 17 17 C 1.38235 * 120.00018 * 236.51582 * 16 14 13 18 18 C 1.38236 * 119.99926 * 179.97438 * 17 16 14 19 19 C 1.38241 * 120.00118 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99765 * 359.97438 * 19 18 17 21 21 C 1.38237 * 120.00223 * 359.97438 * 20 19 18 22 22 C 1.54964 * 100.99790 * 326.03689 * 14 13 12 23 23 O 1.43047 * 110.03787 * 60.84958 * 12 11 10 24 24 C 1.52852 * 110.16749 * 299.33888 * 12 11 10 25 25 C 1.46927 * 120.62126 * 207.79881 * 9 7 2 26 26 H 0.97009 * 119.99811 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.58458 * 6.31544 * 10 9 7 28 28 H 1.09003 * 109.71240 * 245.96141 * 10 9 7 29 29 H 1.08997 * 109.49238 * 294.27852 * 11 10 9 30 30 H 1.09007 * 109.50588 * 174.22034 * 11 10 9 31 31 H 1.08997 * 110.84502 * 143.45969 * 13 12 11 32 32 H 1.09003 * 110.89813 * 19.79218 * 13 12 11 33 33 H 1.07994 * 120.00074 * 0.24303 * 17 16 14 34 34 H 1.08004 * 120.00154 * 179.97438 * 18 17 16 35 35 H 1.07993 * 119.99973 * 179.97438 * 19 18 17 36 36 H 1.07994 * 120.00009 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.00034 * 179.97438 * 21 20 19 38 38 H 1.08996 * 110.31160 * 155.25155 * 22 14 13 39 39 H 1.08998 * 110.30729 * 277.32311 * 22 14 13 40 40 H 1.08994 * 109.48784 * 180.61984 * 24 12 11 41 41 H 1.09000 * 109.49258 * 300.69037 * 24 12 11 42 42 H 1.09003 * 109.59087 * 353.67499 * 25 9 7 43 43 H 1.08996 * 109.59223 * 113.96764 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0531 -1.2237 0.2793 9 7 1.3726 -2.3608 -0.3559 10 6 0.2301 -2.3334 -1.2791 11 6 0.5086 -3.2978 -2.4367 12 6 0.8384 -4.6808 -1.8756 13 6 1.0957 -5.6575 -3.0420 14 6 -0.2710 -6.3851 -3.1675 15 1 -0.9684 -5.8090 -3.7755 16 6 -0.0967 -7.7768 -3.7187 17 6 -0.7729 -8.1567 -4.8630 18 6 -0.6126 -9.4331 -5.3690 19 6 0.2242 -10.3295 -4.7309 20 6 0.9012 -9.9493 -3.5872 21 6 0.7417 -8.6726 -3.0818 22 6 -0.7223 -6.4240 -1.6855 23 8 -0.2701 -5.1815 -1.1228 24 6 2.0825 -4.6075 -0.9906 25 6 1.8177 -3.6545 0.1796 26 1 -0.4850 0.8401 -0.0004 27 1 0.0988 -1.3236 -1.6682 28 1 -0.6739 -2.6432 -0.7547 29 1 1.3530 -2.9312 -3.0203 30 1 -0.3727 -3.3649 -3.0746 31 1 1.8887 -6.3617 -2.7905 32 1 1.3324 -5.1157 -3.9578 33 1 -1.4229 -7.4549 -5.3642 34 1 -1.1412 -9.7300 -6.2628 35 1 0.3491 -11.3268 -5.1260 36 1 1.5546 -10.6497 -3.0885 37 1 1.2703 -8.3757 -2.1880 38 1 -1.8082 -6.4950 -1.6224 39 1 -0.2583 -7.2653 -1.1707 40 1 2.3139 -5.6006 -0.6056 41 1 2.9245 -4.2389 -1.5765 42 1 2.7344 -3.5168 0.7532 43 1 1.0426 -4.0697 0.8237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096220254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:26 Heat of formation + Delta-G solvation = -3.855162 kcal Electronic energy + Delta-G solvation = -23116.732986 eV Core-core repulsion = 19933.865905 eV Total energy + Delta-G solvation = -3182.867081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = -1.22 seconds Orbital eigenvalues (eV) -40.34641 -38.86687 -36.07727 -33.34575 -32.62684 -31.08721 -30.63887 -29.76539 -28.91668 -26.34977 -23.99220 -23.36920 -22.61449 -22.19426 -20.87773 -20.34650 -18.73736 -17.16910 -16.78945 -15.80887 -15.45717 -14.95649 -14.75616 -14.69788 -14.07989 -13.66736 -13.46567 -13.42439 -13.21446 -13.14454 -13.01685 -12.82927 -12.15847 -11.97887 -11.51265 -11.44033 -11.24310 -11.13739 -10.96637 -10.90899 -10.70567 -10.62554 -10.20544 -10.08715 -9.98653 -9.70827 -9.33697 -9.09885 -8.84154 -8.75806 -8.36315 -6.55073 -5.69418 -3.10992 1.17423 1.23086 3.41540 3.49185 3.51620 3.58431 4.13193 4.54804 4.57596 4.64802 4.81583 4.85602 4.96702 5.07574 5.18459 5.27219 5.34684 5.38257 5.46140 5.50178 5.60164 5.77447 5.80295 5.85759 5.88978 5.91255 6.01653 6.08967 6.20943 6.30321 6.33839 6.41721 6.44190 6.51712 6.61879 6.67344 6.79907 6.83180 6.91481 7.16904 7.50824 7.59755 7.82938 7.88165 8.54707 9.31426 9.95777 10.53956 11.38715 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.042582 B = 0.003479 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.397013 B = 8045.274952 C = 8201.857781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.000 4.000 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.177 3.823 11 C -0.141 4.141 12 C 0.120 3.880 13 C -0.137 4.137 14 C -0.088 4.088 15 H 0.092 0.908 16 C -0.064 4.064 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.128 4.128 20 C -0.118 4.118 21 C -0.115 4.115 22 C 0.060 3.940 23 O -0.356 6.356 24 C -0.134 4.134 25 C 0.150 3.850 26 H 0.252 0.748 27 H 0.084 0.916 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -19.008 -10.020 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.199 4.199 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.051 3.949 11 C -0.180 4.180 12 C 0.081 3.919 13 C -0.175 4.175 14 C -0.106 4.106 15 H 0.111 0.889 16 C -0.064 4.064 17 C -0.135 4.135 18 C -0.138 4.138 19 C -0.146 4.146 20 C -0.136 4.136 21 C -0.133 4.133 22 C -0.017 4.017 23 O -0.275 6.275 24 C -0.173 4.173 25 C 0.023 3.977 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.541 -18.742 -9.816 21.163 hybrid contribution 0.451 0.660 -0.284 0.848 sum -0.090 -18.082 -10.099 20.711 Atomic orbital electron populations 1.70070 1.05210 1.25158 1.54177 1.25034 0.95256 0.98317 1.01253 0.86261 0.79358 0.84193 0.77208 1.20323 1.21660 1.21811 1.19235 0.92649 0.84984 1.41010 0.91762 1.44060 1.36021 1.01319 1.50138 1.20664 0.88990 0.97557 0.87682 1.22454 1.00269 0.95075 1.00210 1.21872 0.86835 0.93696 0.89513 1.23391 0.96053 0.98207 0.99818 1.21885 0.98520 0.92603 0.97623 0.88927 1.19689 0.96562 0.94918 0.95254 1.21098 0.99827 0.96481 0.96062 1.21130 0.98886 0.93826 0.99927 1.21132 0.97687 0.99555 0.96243 1.21141 0.99708 0.96265 0.96511 1.21072 0.98583 0.93503 1.00120 1.23384 0.99573 0.88235 0.90506 1.88553 1.49104 1.36202 1.53686 1.22291 0.96071 0.99558 0.99416 1.20793 0.97439 0.86765 0.92654 0.93816 0.89803 0.95748 0.91940 0.93093 0.90707 0.90174 0.86038 0.86189 0.86313 0.86123 0.85889 0.90238 0.92580 0.93039 0.91573 0.93253 0.95765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 11.19 55.49 0.62 -26.31 16 2 C 0.00 -0.01 4.91 -17.43 -0.09 -0.09 16 3 Si 0.90 22.09 29.59 -169.99 -5.03 17.06 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.25 -7.04 9.58 -15.06 -0.14 -7.18 16 8 H 0.06 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.50 2.99 -172.29 -0.52 -16.02 16 10 C 0.18 4.43 5.11 -3.70 -0.02 4.41 16 11 C -0.14 -2.79 4.93 -26.70 -0.13 -2.92 16 12 C 0.12 2.09 0.78 -90.10 -0.07 2.02 16 13 C -0.14 -1.88 5.49 -24.81 -0.14 -2.02 16 14 C -0.09 -1.09 3.31 -89.49 -0.30 -1.39 16 15 H 0.09 1.13 7.97 -51.93 -0.41 0.72 16 16 C -0.06 -0.72 5.01 -104.62 -0.52 -1.24 16 17 C -0.12 -1.19 9.69 -39.58 -0.38 -1.57 16 18 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 19 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 20 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 21 C -0.11 -1.22 8.26 -39.58 -0.33 -1.55 16 22 C 0.06 0.84 7.21 38.19 0.28 1.11 16 23 O -0.36 -6.58 9.69 -35.23 -0.34 -6.92 16 24 C -0.13 -2.44 4.95 -26.69 -0.13 -2.57 16 25 C 0.15 3.35 6.31 -3.69 -0.02 3.33 16 26 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.08 2.32 6.03 -51.93 -0.31 2.01 16 28 H 0.02 0.66 7.90 -51.93 -0.41 0.25 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.96 6.66 -51.93 -0.35 0.61 16 32 H 0.08 1.06 7.80 -51.93 -0.41 0.66 16 33 H 0.12 1.07 7.99 -52.49 -0.42 0.65 16 34 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.12 1.27 7.03 -52.49 -0.37 0.90 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.73 6.84 -51.93 -0.36 0.37 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.02 0.57 7.90 -51.93 -0.41 0.16 16 LS Contribution 335.58 15.07 5.06 5.06 Total: -1.00 -31.31 335.58 -10.18 -41.49 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.78 Total: -0.18 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -3.19 Total: -14.18 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.11 Total: -42.32 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.34 Total: -6.92 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.31 -10.18 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096220254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.634 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.22 seconds