Wall clock time and date at job start Tue Mar 31 2020 02:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99938 * 2 1 4 4 H 1.48505 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47033 * 300.00012 * 3 2 1 6 6 H 1.48500 * 109.47377 * 60.00188 * 3 2 1 7 7 C 1.38807 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00217 * 197.40880 * 7 2 1 9 9 N 1.36942 * 120.00079 * 17.40776 * 7 2 1 10 10 C 1.46917 * 120.62360 * 27.76774 * 9 7 2 11 11 C 1.53218 * 108.76327 * 126.09928 * 10 9 7 12 12 C 1.52848 * 109.35732 * 54.24792 * 11 10 9 13 13 C 1.54291 * 109.34523 * 179.05988 * 12 11 10 14 14 C 1.55344 * 102.17346 * 261.61414 * 13 12 11 15 15 H 1.08999 * 111.12214 * 83.98299 * 14 13 12 16 16 C 1.50700 * 111.12474 * 208.09398 * 14 13 12 17 17 C 1.38235 * 120.00018 * 236.51582 * 16 14 13 18 18 C 1.38236 * 119.99926 * 179.97438 * 17 16 14 19 19 C 1.38241 * 120.00118 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99765 * 359.97438 * 19 18 17 21 21 C 1.38237 * 120.00223 * 359.97438 * 20 19 18 22 22 C 1.54964 * 100.99790 * 326.03689 * 14 13 12 23 23 O 1.43047 * 110.03787 * 60.84958 * 12 11 10 24 24 C 1.52852 * 110.16749 * 299.33888 * 12 11 10 25 25 C 1.46927 * 120.62126 * 207.79881 * 9 7 2 26 26 H 0.97009 * 119.99811 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.58458 * 6.31544 * 10 9 7 28 28 H 1.09003 * 109.71240 * 245.96141 * 10 9 7 29 29 H 1.08997 * 109.49238 * 294.27852 * 11 10 9 30 30 H 1.09007 * 109.50588 * 174.22034 * 11 10 9 31 31 H 1.08997 * 110.84502 * 143.45969 * 13 12 11 32 32 H 1.09003 * 110.89813 * 19.79218 * 13 12 11 33 33 H 1.07994 * 120.00074 * 0.24303 * 17 16 14 34 34 H 1.08004 * 120.00154 * 179.97438 * 18 17 16 35 35 H 1.07993 * 119.99973 * 179.97438 * 19 18 17 36 36 H 1.07994 * 120.00009 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.00034 * 179.97438 * 21 20 19 38 38 H 1.08996 * 110.31160 * 155.25155 * 22 14 13 39 39 H 1.08998 * 110.30729 * 277.32311 * 22 14 13 40 40 H 1.08994 * 109.48784 * 180.61984 * 24 12 11 41 41 H 1.09000 * 109.49258 * 300.69037 * 24 12 11 42 42 H 1.09003 * 109.59087 * 353.67499 * 25 9 7 43 43 H 1.08996 * 109.59223 * 113.96764 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0531 -1.2237 0.2793 9 7 1.3726 -2.3608 -0.3559 10 6 0.2301 -2.3334 -1.2791 11 6 0.5086 -3.2978 -2.4367 12 6 0.8384 -4.6808 -1.8756 13 6 1.0957 -5.6575 -3.0420 14 6 -0.2710 -6.3851 -3.1675 15 1 -0.9684 -5.8090 -3.7755 16 6 -0.0967 -7.7768 -3.7187 17 6 -0.7729 -8.1567 -4.8630 18 6 -0.6126 -9.4331 -5.3690 19 6 0.2242 -10.3295 -4.7309 20 6 0.9012 -9.9493 -3.5872 21 6 0.7417 -8.6726 -3.0818 22 6 -0.7223 -6.4240 -1.6855 23 8 -0.2701 -5.1815 -1.1228 24 6 2.0825 -4.6075 -0.9906 25 6 1.8177 -3.6545 0.1796 26 1 -0.4850 0.8401 -0.0004 27 1 0.0988 -1.3236 -1.6682 28 1 -0.6739 -2.6432 -0.7547 29 1 1.3530 -2.9312 -3.0203 30 1 -0.3727 -3.3649 -3.0746 31 1 1.8887 -6.3617 -2.7905 32 1 1.3324 -5.1157 -3.9578 33 1 -1.4229 -7.4549 -5.3642 34 1 -1.1412 -9.7300 -6.2628 35 1 0.3491 -11.3268 -5.1260 36 1 1.5546 -10.6497 -3.0885 37 1 1.2703 -8.3757 -2.1880 38 1 -1.8082 -6.4950 -1.6224 39 1 -0.2583 -7.2653 -1.1707 40 1 2.3139 -5.6006 -0.6056 41 1 2.9245 -4.2389 -1.5765 42 1 2.7344 -3.5168 0.7532 43 1 1.0426 -4.0697 0.8237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096220254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:22 Heat of formation + Delta-G solvation = -20.582240 kcal Electronic energy + Delta-G solvation = -23117.458327 eV Core-core repulsion = 19933.865905 eV Total energy + Delta-G solvation = -3183.592422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49814 -39.80632 -37.79457 -34.55642 -34.28040 -32.36039 -31.78149 -31.52300 -29.98450 -27.93243 -25.70107 -24.36364 -23.92576 -23.33109 -22.50759 -21.35508 -20.25637 -18.74321 -17.96329 -16.91268 -16.81284 -16.54254 -15.87283 -15.74520 -15.63233 -15.28231 -14.96553 -14.85223 -14.41310 -14.27938 -14.03047 -13.98820 -13.57295 -13.29313 -13.09648 -12.96207 -12.60521 -12.58530 -12.49071 -12.15995 -12.07954 -11.93393 -11.87526 -11.80192 -11.64457 -11.32991 -11.00002 -10.56289 -10.26283 -9.77669 -9.54413 -8.66137 -7.85351 -5.31412 0.44976 0.53526 1.46255 1.47162 1.58858 2.51914 2.82111 2.97471 3.28817 3.56613 3.69424 3.73217 3.93046 3.99295 4.07419 4.16701 4.21568 4.28578 4.31700 4.35747 4.52318 4.65414 4.69219 4.72150 4.75048 4.77896 4.84405 4.93445 4.97661 5.03922 5.08446 5.14020 5.19861 5.22755 5.28216 5.39858 5.49509 5.61488 5.65322 5.66373 5.75226 5.80932 6.14851 6.31903 6.40205 7.16006 7.88109 8.41838 9.20998 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.042582 B = 0.003479 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.397013 B = 8045.274952 C = 8201.857781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.055 4.055 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.610 5.610 10 C 0.187 3.813 11 C -0.131 4.131 12 C 0.120 3.880 13 C -0.126 4.126 14 C -0.075 4.075 15 H 0.093 0.907 16 C -0.078 4.078 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.127 4.127 22 C 0.054 3.946 23 O -0.389 6.389 24 C -0.124 4.124 25 C 0.146 3.854 26 H 0.249 0.751 27 H 0.050 0.950 28 H -0.012 1.012 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.123 0.877 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -21.086 -11.653 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.250 4.250 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.220 1.220 7 C -0.393 4.393 8 H 0.086 0.914 9 N -0.334 5.334 10 C 0.061 3.939 11 C -0.170 4.170 12 C 0.080 3.920 13 C -0.163 4.163 14 C -0.093 4.093 15 H 0.111 0.889 16 C -0.078 4.078 17 C -0.145 4.145 18 C -0.142 4.142 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.022 4.022 23 O -0.309 6.309 24 C -0.163 4.163 25 C 0.021 3.979 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.007 0.993 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.141 0.859 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 0.680 -20.855 -11.454 23.803 hybrid contribution 0.022 1.217 0.278 1.248 sum 0.702 -19.639 -11.176 22.607 Atomic orbital electron populations 1.70243 1.06847 1.25694 1.55560 1.25864 0.96051 1.01701 1.01390 0.85168 0.78648 0.79616 0.76781 1.18874 1.21534 1.21980 1.19597 0.93003 0.86114 1.40556 0.91447 1.44343 1.36032 1.02190 1.50815 1.20391 0.87641 0.96975 0.88872 1.22289 1.01024 0.95478 0.98175 1.21796 0.86312 0.93166 0.90678 1.23269 0.97291 0.97530 0.98224 1.21735 0.97548 0.93583 0.96462 0.88899 1.19590 0.97842 0.94231 0.96116 1.21294 0.99921 0.97344 0.95918 1.21438 0.98837 0.93379 1.00571 1.21487 0.96861 1.00586 0.95814 1.21418 0.99928 0.96120 0.96789 1.21181 0.98810 0.94123 1.00351 1.23582 1.00031 0.86846 0.91753 1.88530 1.49505 1.38174 1.54735 1.22180 0.96721 0.99607 0.97820 1.20913 0.96621 0.86087 0.94310 0.94196 0.93191 0.99344 0.91523 0.91750 0.89251 0.89361 0.85202 0.84100 0.84005 0.84323 0.85860 0.89728 0.91435 0.90280 0.90954 0.93064 0.97681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.08 11.19 21.65 0.24 -57.84 16 2 C -0.06 -3.20 4.91 84.86 0.42 -2.79 16 3 Si 0.97 46.18 29.59 68.60 2.03 48.21 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.26 -15.12 9.58 84.03 0.81 -14.31 16 8 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 9 N -0.61 -32.77 2.99 -699.00 -2.09 -34.86 16 10 C 0.19 9.75 5.11 86.37 0.44 10.19 16 11 C -0.13 -5.18 4.93 30.62 0.15 -5.03 16 12 C 0.12 4.06 0.78 -10.46 -0.01 4.05 16 13 C -0.13 -3.16 5.49 31.84 0.17 -2.98 16 14 C -0.07 -1.72 3.31 -10.06 -0.03 -1.75 16 15 H 0.09 2.12 7.97 -2.39 -0.02 2.10 16 16 C -0.08 -1.56 5.01 -19.87 -0.10 -1.66 16 17 C -0.13 -2.27 9.69 22.27 0.22 -2.06 16 18 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 19 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 20 C -0.12 -1.98 10.05 22.27 0.22 -1.75 16 21 C -0.13 -2.39 8.26 22.27 0.18 -2.20 16 22 C 0.05 1.45 7.21 72.65 0.52 1.98 16 23 O -0.39 -14.32 9.69 -148.98 -1.44 -15.77 16 24 C -0.12 -4.36 4.95 30.62 0.15 -4.21 16 25 C 0.15 6.60 6.31 86.37 0.54 7.15 16 26 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 27 H 0.05 2.91 6.03 -2.39 -0.01 2.89 16 28 H -0.01 -0.67 7.90 -2.39 -0.02 -0.69 16 29 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.09 2.01 6.66 -2.39 -0.02 2.00 16 32 H 0.09 2.10 7.80 -2.39 -0.02 2.08 16 33 H 0.13 2.01 7.99 -2.91 -0.02 1.99 16 34 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.12 2.24 7.03 -2.91 -0.02 2.22 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.07 1.65 6.84 -2.39 -0.02 1.63 16 40 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 43 H 0.01 0.25 7.90 -2.39 -0.02 0.23 16 Total: -1.00 -69.53 335.58 3.85 -65.68 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.97 Total: 13.26 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 4.14 Total: -18.68 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -1.85 Total: -92.70 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -1.44 Total: -15.77 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -69.53 3.85 -65.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096220254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.094 kcal (2) G-P(sol) polarization free energy of solvation -69.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds