Wall clock time and date at job start Tue Mar 31 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48498 * 109.47370 * 240.00567 * 3 2 1 5 5 H 1.48505 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47054 * 120.00192 * 3 2 1 7 7 C 1.38817 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99734 * 197.30098 * 7 2 1 9 9 N 1.36932 * 119.99791 * 17.30108 * 7 2 1 10 10 C 1.46928 * 120.62109 * 207.50448 * 9 7 2 11 11 C 1.53214 * 108.88520 * 234.00693 * 10 9 7 12 12 C 1.52809 * 109.37876 * 305.74480 * 11 10 9 13 13 C 1.53914 * 109.62797 * 181.33524 * 12 11 10 14 14 C 1.54850 * 104.10808 * 121.31222 * 13 12 11 15 15 H 1.08996 * 110.91057 * 262.70213 * 14 13 12 16 16 C 1.50701 * 110.90756 * 139.08991 * 14 13 12 17 17 C 1.38230 * 120.00103 * 299.73251 * 16 14 13 18 18 C 1.38240 * 120.00090 * 179.78838 * 17 16 14 19 19 C 1.38238 * 119.99784 * 0.45954 * 18 17 16 20 20 C 1.38244 * 119.99811 * 359.77346 * 19 18 17 21 21 C 1.38233 * 119.99919 * 0.02562 * 20 19 18 22 22 C 1.55022 * 102.09054 * 20.89614 * 14 13 12 23 23 O 1.43501 * 109.87305 * 299.29921 * 12 11 10 24 24 C 1.52801 * 110.25386 * 60.54833 * 12 11 10 25 25 C 1.47202 * 120.80798 * 27.63690 * 9 7 2 26 26 H 0.96995 * 120.00374 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.58721 * 114.14603 * 10 9 7 28 28 H 1.09004 * 109.58566 * 353.85911 * 10 9 7 29 29 H 1.08994 * 109.49256 * 65.72287 * 11 10 9 30 30 H 1.09003 * 109.48436 * 185.77817 * 11 10 9 31 31 H 1.08998 * 110.50293 * 239.97340 * 13 12 11 32 32 H 1.09001 * 110.50252 * 2.52051 * 13 12 11 33 33 H 1.07998 * 120.00060 * 359.97438 * 17 16 14 34 34 H 1.07994 * 120.00415 * 180.24970 * 18 17 16 35 35 H 1.08001 * 119.99926 * 179.79180 * 19 18 17 36 36 H 1.07993 * 119.99606 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.99560 * 179.97438 * 21 20 19 38 38 H 1.09002 * 110.61072 * 81.61310 * 22 14 13 39 39 H 1.08999 * 110.60913 * 204.58898 * 22 14 13 40 40 H 1.08998 * 109.48978 * 59.42670 * 24 12 11 41 41 H 1.09003 * 109.49027 * 179.48722 * 24 12 11 42 42 H 1.08999 * 109.53615 * 6.21125 * 25 9 7 43 43 H 1.09009 * 109.67744 * 245.90019 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0537 -1.2234 0.2776 9 7 1.3720 -2.3610 -0.3537 10 6 1.8221 -3.6550 0.1772 11 6 2.0845 -4.6074 -0.9940 12 6 0.8380 -4.6838 -1.8744 13 6 1.0838 -5.6650 -3.0345 14 6 -0.0254 -6.7326 -2.8674 15 1 0.3533 -7.6076 -2.3392 16 6 -0.6032 -7.1216 -4.2037 17 6 -1.2113 -6.1675 -4.9979 18 6 -1.7375 -6.5234 -6.2257 19 6 -1.6640 -7.8353 -6.6551 20 6 -1.0602 -8.7904 -5.8586 21 6 -0.5303 -8.4336 -4.6328 22 6 -1.0741 -5.9796 -2.0093 23 8 -0.2685 -5.1858 -1.1109 24 6 0.4995 -3.3025 -2.4333 25 6 0.2237 -2.3388 -1.2744 26 1 -0.4850 0.8400 0.0004 27 1 1.0500 -4.0736 0.8227 28 1 2.7402 -3.5163 0.7482 29 1 2.9236 -4.2370 -1.5829 30 1 2.3197 -5.6000 -0.6098 31 1 0.9825 -5.1560 -3.9930 32 1 2.0705 -6.1198 -2.9473 33 1 -1.2727 -5.1434 -4.6605 34 1 -2.2090 -5.7772 -6.8480 35 1 -2.0781 -8.1141 -7.6128 36 1 -1.0024 -9.8153 -6.1943 37 1 -0.0589 -9.1799 -4.0104 38 1 -1.6943 -5.3390 -2.6362 39 1 -1.6904 -6.6843 -1.4509 40 1 1.3391 -2.9326 -3.0217 41 1 -0.3853 -3.3730 -3.0660 42 1 0.0874 -1.3296 -1.6628 43 1 -0.6768 -2.6516 -0.7456 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096220255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:32 Heat of formation + Delta-G solvation = -3.765332 kcal Electronic energy + Delta-G solvation = -23233.746885 eV Core-core repulsion = 20050.883699 eV Total energy + Delta-G solvation = -3182.863186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.36614 -38.83262 -36.03328 -33.30875 -32.60830 -31.05142 -30.54714 -29.85354 -28.87576 -26.36074 -24.08277 -23.28851 -22.55420 -22.18388 -20.93704 -20.20544 -18.76235 -17.12847 -16.75129 -15.75535 -15.48148 -14.93351 -14.78423 -14.72031 -14.15158 -13.59702 -13.51316 -13.42313 -13.23812 -12.98580 -12.95796 -12.80371 -12.11583 -11.94420 -11.46119 -11.43133 -11.32911 -11.07768 -10.89591 -10.88293 -10.68022 -10.63230 -10.26680 -10.08831 -9.99966 -9.71964 -9.36250 -9.06514 -8.92379 -8.71123 -8.37204 -6.56053 -5.69988 -3.11213 1.21517 1.27124 3.42745 3.48192 3.49538 3.62793 4.19108 4.56291 4.62182 4.69593 4.86008 4.91473 5.00795 5.04684 5.20437 5.29703 5.37868 5.43478 5.46075 5.51523 5.60936 5.78878 5.81373 5.88384 5.90608 5.94114 6.04478 6.11763 6.17123 6.32570 6.38153 6.41349 6.45575 6.54432 6.57609 6.65501 6.78794 6.86967 6.92368 7.16325 7.47260 7.48999 7.80291 7.86538 8.53705 9.30308 9.94717 10.53495 11.38442 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.003801 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.455855 B = 7364.751474 C = 7773.085860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.149 3.851 11 C -0.124 4.124 12 C 0.116 3.884 13 C -0.138 4.138 14 C -0.086 4.086 15 H 0.089 0.911 16 C -0.066 4.066 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.128 4.128 20 C -0.121 4.121 21 C -0.118 4.118 22 C 0.055 3.945 23 O -0.352 6.352 24 C -0.150 4.150 25 C 0.177 3.823 26 H 0.253 0.747 27 H 0.025 0.975 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.173 -16.667 -11.572 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.022 3.978 11 C -0.163 4.163 12 C 0.077 3.923 13 C -0.176 4.176 14 C -0.104 4.104 15 H 0.107 0.893 16 C -0.066 4.066 17 C -0.132 4.132 18 C -0.135 4.135 19 C -0.146 4.146 20 C -0.139 4.139 21 C -0.136 4.136 22 C -0.022 4.022 23 O -0.271 6.271 24 C -0.190 4.190 25 C 0.051 3.949 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.316 -16.452 -11.315 20.101 hybrid contribution 0.405 0.760 -0.362 0.934 sum -1.911 -15.692 -11.677 19.653 Atomic orbital electron populations 1.70036 1.05212 1.25399 1.54043 1.25024 0.95251 0.98289 1.01207 0.86396 0.78908 0.83562 0.78060 1.21137 1.21691 1.20956 1.19156 0.92601 0.84991 1.41268 0.91810 1.44087 1.35659 1.01263 1.50487 1.20813 0.97504 0.86764 0.92709 1.22121 0.95247 0.99778 0.99158 1.21858 0.87478 0.93041 0.89932 1.23210 0.98541 0.95890 0.99924 1.21764 0.96451 0.99324 0.92899 0.89269 1.19730 0.97789 0.93481 0.95562 1.21119 0.98036 0.99698 0.94341 1.21164 0.99717 0.96366 0.96272 1.21135 1.00212 0.93457 0.99830 1.21112 0.98719 0.99338 0.94706 1.21069 1.00323 0.95651 0.96567 1.23572 0.93380 0.93149 0.92118 1.88976 1.37592 1.67557 1.32995 1.22592 1.00138 0.95885 1.00342 1.20709 0.88934 0.97539 0.87676 0.93707 0.95722 0.93175 0.91428 0.92658 0.90594 0.90700 0.85733 0.86057 0.86327 0.86262 0.86166 0.92227 0.89522 0.92012 0.93393 0.89787 0.95811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 11.18 55.49 0.62 -26.25 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -7.07 9.59 -15.06 -0.14 -7.21 16 8 H 0.06 1.76 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -15.45 3.00 -172.05 -0.52 -15.97 16 10 C 0.15 3.31 6.30 -3.70 -0.02 3.29 16 11 C -0.12 -2.25 4.88 -26.72 -0.13 -2.38 16 12 C 0.12 2.03 0.71 -90.34 -0.06 1.96 16 13 C -0.14 -1.91 5.75 -25.28 -0.15 -2.06 16 14 C -0.09 -1.06 3.35 -89.73 -0.30 -1.36 16 15 H 0.09 1.02 7.96 -51.93 -0.41 0.61 16 16 C -0.07 -0.75 4.94 -104.63 -0.52 -1.27 16 17 C -0.11 -1.31 8.21 -39.58 -0.32 -1.64 16 18 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 19 C -0.13 -1.20 10.05 -39.58 -0.40 -1.59 16 20 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 21 C -0.12 -1.21 9.69 -39.58 -0.38 -1.59 16 22 C 0.05 0.78 7.06 38.23 0.27 1.05 16 23 O -0.35 -6.49 9.82 -35.23 -0.35 -6.84 16 24 C -0.15 -2.95 4.82 -26.72 -0.13 -3.08 16 25 C 0.18 4.41 5.13 -3.54 -0.02 4.39 16 26 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.02 0.58 7.89 -51.93 -0.41 0.17 16 28 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.04 6.77 -51.93 -0.35 0.69 16 32 H 0.07 0.97 7.68 -51.93 -0.40 0.57 16 33 H 0.12 1.46 7.23 -52.49 -0.38 1.08 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 1.03 7.99 -52.49 -0.42 0.62 16 38 H 0.06 0.84 6.67 -51.93 -0.35 0.50 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.08 2.32 6.03 -51.93 -0.31 2.01 16 43 H 0.02 0.64 7.89 -51.92 -0.41 0.23 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -31.13 335.50 -10.19 -41.32 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.78 Total: 0.32 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -3.19 Total: -14.68 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.10 Total: -42.22 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.35 Total: -6.84 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.13 -10.19 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096220255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.555 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds