Wall clock time and date at job start Tue Mar 31 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48498 * 109.47370 * 240.00567 * 3 2 1 5 5 H 1.48505 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47054 * 120.00192 * 3 2 1 7 7 C 1.38817 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99734 * 197.30098 * 7 2 1 9 9 N 1.36932 * 119.99791 * 17.30108 * 7 2 1 10 10 C 1.46928 * 120.62109 * 207.50448 * 9 7 2 11 11 C 1.53214 * 108.88520 * 234.00693 * 10 9 7 12 12 C 1.52809 * 109.37876 * 305.74480 * 11 10 9 13 13 C 1.53914 * 109.62797 * 181.33524 * 12 11 10 14 14 C 1.54850 * 104.10808 * 121.31222 * 13 12 11 15 15 H 1.08996 * 110.91057 * 262.70213 * 14 13 12 16 16 C 1.50701 * 110.90756 * 139.08991 * 14 13 12 17 17 C 1.38230 * 120.00103 * 299.73251 * 16 14 13 18 18 C 1.38240 * 120.00090 * 179.78838 * 17 16 14 19 19 C 1.38238 * 119.99784 * 0.45954 * 18 17 16 20 20 C 1.38244 * 119.99811 * 359.77346 * 19 18 17 21 21 C 1.38233 * 119.99919 * 0.02562 * 20 19 18 22 22 C 1.55022 * 102.09054 * 20.89614 * 14 13 12 23 23 O 1.43501 * 109.87305 * 299.29921 * 12 11 10 24 24 C 1.52801 * 110.25386 * 60.54833 * 12 11 10 25 25 C 1.47202 * 120.80798 * 27.63690 * 9 7 2 26 26 H 0.96995 * 120.00374 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.58721 * 114.14603 * 10 9 7 28 28 H 1.09004 * 109.58566 * 353.85911 * 10 9 7 29 29 H 1.08994 * 109.49256 * 65.72287 * 11 10 9 30 30 H 1.09003 * 109.48436 * 185.77817 * 11 10 9 31 31 H 1.08998 * 110.50293 * 239.97340 * 13 12 11 32 32 H 1.09001 * 110.50252 * 2.52051 * 13 12 11 33 33 H 1.07998 * 120.00060 * 359.97438 * 17 16 14 34 34 H 1.07994 * 120.00415 * 180.24970 * 18 17 16 35 35 H 1.08001 * 119.99926 * 179.79180 * 19 18 17 36 36 H 1.07993 * 119.99606 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.99560 * 179.97438 * 21 20 19 38 38 H 1.09002 * 110.61072 * 81.61310 * 22 14 13 39 39 H 1.08999 * 110.60913 * 204.58898 * 22 14 13 40 40 H 1.08998 * 109.48978 * 59.42670 * 24 12 11 41 41 H 1.09003 * 109.49027 * 179.48722 * 24 12 11 42 42 H 1.08999 * 109.53615 * 6.21125 * 25 9 7 43 43 H 1.09009 * 109.67744 * 245.90019 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0537 -1.2234 0.2776 9 7 1.3720 -2.3610 -0.3537 10 6 1.8221 -3.6550 0.1772 11 6 2.0845 -4.6074 -0.9940 12 6 0.8380 -4.6838 -1.8744 13 6 1.0838 -5.6650 -3.0345 14 6 -0.0254 -6.7326 -2.8674 15 1 0.3533 -7.6076 -2.3392 16 6 -0.6032 -7.1216 -4.2037 17 6 -1.2113 -6.1675 -4.9979 18 6 -1.7375 -6.5234 -6.2257 19 6 -1.6640 -7.8353 -6.6551 20 6 -1.0602 -8.7904 -5.8586 21 6 -0.5303 -8.4336 -4.6328 22 6 -1.0741 -5.9796 -2.0093 23 8 -0.2685 -5.1858 -1.1109 24 6 0.4995 -3.3025 -2.4333 25 6 0.2237 -2.3388 -1.2744 26 1 -0.4850 0.8400 0.0004 27 1 1.0500 -4.0736 0.8227 28 1 2.7402 -3.5163 0.7482 29 1 2.9236 -4.2370 -1.5829 30 1 2.3197 -5.6000 -0.6098 31 1 0.9825 -5.1560 -3.9930 32 1 2.0705 -6.1198 -2.9473 33 1 -1.2727 -5.1434 -4.6605 34 1 -2.2090 -5.7772 -6.8480 35 1 -2.0781 -8.1141 -7.6128 36 1 -1.0024 -9.8153 -6.1943 37 1 -0.0589 -9.1799 -4.0104 38 1 -1.6943 -5.3390 -2.6362 39 1 -1.6904 -6.6843 -1.4509 40 1 1.3391 -2.9326 -3.0217 41 1 -0.3853 -3.3730 -3.0660 42 1 0.0874 -1.3296 -1.6628 43 1 -0.6768 -2.6516 -0.7456 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096220255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:28 Heat of formation + Delta-G solvation = -20.376317 kcal Electronic energy + Delta-G solvation = -23234.467192 eV Core-core repulsion = 20050.883699 eV Total energy + Delta-G solvation = -3183.583492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53747 -39.79817 -37.75347 -34.54899 -34.25024 -32.29545 -31.77471 -31.59679 -29.97358 -27.93488 -25.78063 -24.39816 -23.84512 -23.32124 -22.54680 -21.23198 -20.32251 -18.73132 -17.93212 -16.98173 -16.73093 -16.53688 -15.96357 -15.79995 -15.67427 -15.25505 -14.98904 -14.86957 -14.41303 -14.17471 -14.03344 -13.94860 -13.54832 -13.28666 -13.07314 -12.99034 -12.58540 -12.52784 -12.48912 -12.21544 -12.07004 -11.94397 -11.89417 -11.80775 -11.63881 -11.31776 -11.03153 -10.56505 -10.36113 -9.78330 -9.54225 -8.66730 -7.85800 -5.31406 0.45079 0.52993 1.46186 1.49014 1.56113 2.51803 2.83949 3.02088 3.28432 3.61061 3.73035 3.73763 3.88986 3.97383 4.07703 4.17057 4.20570 4.29481 4.33821 4.37112 4.51181 4.63564 4.67748 4.72913 4.73533 4.75515 4.86102 4.93603 4.94888 5.04162 5.09426 5.13597 5.17951 5.21945 5.30545 5.38231 5.49142 5.61207 5.64350 5.66042 5.75472 5.77539 6.14325 6.18516 6.39324 7.15072 7.87107 8.41622 9.20622 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.003801 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.455855 B = 7364.751474 C = 7773.085860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.054 4.054 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.265 4.265 8 H 0.068 0.932 9 N -0.610 5.610 10 C 0.145 3.855 11 C -0.115 4.115 12 C 0.116 3.884 13 C -0.128 4.128 14 C -0.070 4.070 15 H 0.105 0.895 16 C -0.079 4.079 17 C -0.131 4.131 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.122 4.122 22 C 0.048 3.952 23 O -0.383 6.383 24 C -0.139 4.139 25 C 0.188 3.812 26 H 0.249 0.751 27 H 0.006 0.994 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.049 0.951 43 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 -18.861 -13.233 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.798 3.202 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.395 4.395 8 H 0.086 0.914 9 N -0.334 5.334 10 C 0.019 3.981 11 C -0.154 4.154 12 C 0.077 3.923 13 C -0.166 4.166 14 C -0.089 4.089 15 H 0.123 0.877 16 C -0.079 4.079 17 C -0.149 4.149 18 C -0.146 4.146 19 C -0.148 4.148 20 C -0.141 4.141 21 C -0.140 4.140 22 C -0.028 4.028 23 O -0.302 6.302 24 C -0.178 4.178 25 C 0.062 3.938 26 H 0.058 0.942 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges -1.185 -18.678 -12.982 22.777 hybrid contribution -0.021 1.394 0.177 1.406 sum -1.206 -17.284 -12.805 21.544 Atomic orbital electron populations 1.70217 1.06842 1.25836 1.55437 1.25856 0.96041 1.01682 1.01328 0.85298 0.77516 0.78951 0.78428 1.20201 1.22028 1.20036 1.19543 0.93021 0.86132 1.40839 0.91384 1.44370 1.35679 1.02159 1.51163 1.20935 0.96726 0.86049 0.94367 1.22022 0.95882 0.99888 0.97563 1.21801 0.87037 0.92471 0.90989 1.23086 1.00076 0.95379 0.98034 1.21638 0.94985 0.98992 0.93267 0.87723 1.19675 0.98790 0.94231 0.95175 1.21155 0.99120 0.99378 0.95268 1.21389 0.99750 0.97409 0.96036 1.21476 0.99551 0.92988 1.00747 1.21464 0.97779 1.00606 0.94230 1.21315 1.00161 0.95331 0.97203 1.23763 0.93749 0.93167 0.92161 1.88952 1.38370 1.68301 1.34624 1.22418 1.00774 0.96354 0.98269 1.20430 0.87639 0.96905 0.88833 0.94193 0.97614 0.92913 0.90758 0.89806 0.90452 0.88903 0.86939 0.84914 0.84048 0.83757 0.84430 0.92801 0.88128 0.91876 0.92101 0.93226 0.99306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.03 11.18 21.65 0.24 -57.79 16 2 C -0.05 -3.14 4.92 84.86 0.42 -2.72 16 3 Si 0.97 46.15 29.59 68.60 2.03 48.17 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.27 -15.28 9.59 84.04 0.81 -14.47 16 8 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 9 N -0.61 -32.75 3.00 -698.25 -2.10 -34.85 16 10 C 0.14 6.52 6.30 86.37 0.54 7.06 16 11 C -0.11 -4.02 4.88 30.60 0.15 -3.87 16 12 C 0.12 3.96 0.71 -10.62 -0.01 3.95 16 13 C -0.13 -3.26 5.75 31.53 0.18 -3.08 16 14 C -0.07 -1.58 3.35 -10.22 -0.03 -1.61 16 15 H 0.10 2.04 7.96 -2.39 -0.02 2.02 16 16 C -0.08 -1.64 4.94 -19.87 -0.10 -1.74 16 17 C -0.13 -2.86 8.21 22.27 0.18 -2.68 16 18 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 19 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 20 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 21 C -0.12 -2.11 9.69 22.27 0.22 -1.90 16 22 C 0.05 1.33 7.06 72.67 0.51 1.84 16 23 O -0.38 -14.05 9.82 -148.98 -1.46 -15.52 16 24 C -0.14 -5.54 4.82 30.60 0.15 -5.39 16 25 C 0.19 9.78 5.13 86.32 0.44 10.22 16 26 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.01 0.28 7.89 -2.39 -0.02 0.26 16 28 H 0.05 2.29 7.93 -2.38 -0.02 2.27 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.08 1.96 6.77 -2.39 -0.02 1.95 16 32 H 0.09 2.06 7.68 -2.39 -0.02 2.04 16 33 H 0.11 2.64 7.23 -2.91 -0.02 2.62 16 34 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 36 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.14 1.84 7.99 -2.91 -0.02 1.82 16 38 H 0.05 1.53 6.67 -2.39 -0.02 1.51 16 39 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.05 2.89 6.03 -2.39 -0.01 2.87 16 43 H -0.01 -0.65 7.89 -2.38 -0.02 -0.67 16 Total: -1.00 -69.40 335.50 3.82 -65.58 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.97 Total: 14.40 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 4.13 Total: -19.99 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -1.85 Total: -92.64 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.46 Total: -15.52 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -69.40 3.82 -65.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096220255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.204 kcal (2) G-P(sol) polarization free energy of solvation -69.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds