Wall clock time and date at job start Tue Mar 31 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81398 * 109.47419 * 2 1 4 4 O 1.42102 * 109.46411 * 63.61098 * 3 2 1 5 5 C 1.81399 * 103.00247 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46809 * 294.99844 * 5 3 2 7 7 C 1.52999 * 109.47080 * 55.00247 * 5 3 2 8 8 C 1.52994 * 109.46962 * 179.97438 * 7 5 3 9 9 C 1.52992 * 109.47568 * 300.00188 * 8 7 5 10 10 C 1.53003 * 109.47466 * 59.99504 * 9 8 7 11 11 C 1.52994 * 109.47132 * 300.00763 * 10 9 8 12 12 H 1.09003 * 109.47340 * 299.99330 * 11 10 9 13 13 N 1.46906 * 109.47113 * 179.97438 * 11 10 9 14 14 C 1.46901 * 110.99793 * 84.99675 * 13 11 10 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46756 * 59.99920 * 21 19 17 23 23 H 1.48490 * 109.47381 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47117 * 300.00527 * 21 19 17 25 25 H 1.09001 * 109.47351 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47205 * 299.99554 * 1 2 3 27 27 H 1.09002 * 109.47035 * 60.00144 * 1 2 3 28 28 H 1.09002 * 109.47135 * 240.00085 * 2 1 3 29 29 H 1.08994 * 109.47084 * 120.00518 * 2 1 3 30 30 H 1.09005 * 109.46939 * 299.99768 * 7 5 3 31 31 H 1.09003 * 109.46965 * 59.99754 * 7 5 3 32 32 H 1.09003 * 109.47340 * 60.00157 * 8 7 5 33 33 H 1.08996 * 109.47268 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47812 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.47108 * 299.99899 * 9 8 7 36 36 H 1.08995 * 109.47249 * 179.97438 * 10 9 8 37 37 H 1.09003 * 109.46461 * 60.00631 * 10 9 8 38 38 H 1.00898 * 110.99995 * 321.04597 * 13 11 10 39 39 H 1.09001 * 109.46874 * 60.00179 * 14 13 11 40 40 H 1.08992 * 109.47407 * 300.00197 * 14 13 11 41 41 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 42 42 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 43 43 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 44 44 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 45 45 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7311 2.3552 1.2002 5 6 3.9371 1.5057 -0.0008 6 1 4.2495 1.0331 0.9304 7 6 4.3501 0.6264 -1.1828 8 6 5.8704 0.4545 -1.1838 9 6 6.5386 1.8250 -1.3098 10 6 6.1256 2.7045 -0.1279 11 6 4.6053 2.8764 -0.1269 12 1 4.2924 3.3488 -1.0580 13 7 4.2087 3.7203 1.0083 14 6 4.3065 5.1451 0.6644 15 6 3.8858 5.9903 1.8684 16 6 3.9870 7.4743 1.5101 17 6 3.5733 8.3069 2.6961 18 1 3.2690 7.8257 3.6139 19 6 3.5842 9.6829 2.6100 20 7 3.9552 10.2688 1.4926 21 14 3.0706 10.7149 4.0799 22 1 3.9650 10.4202 5.2283 23 1 3.1702 12.1552 3.7326 24 1 1.6692 10.3895 4.4478 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8737 -0.3500 -1.0931 31 1 4.0376 1.0991 -2.1139 32 1 6.1833 -0.0180 -0.2526 33 1 6.1646 -0.1723 -2.0255 34 1 7.6217 1.7026 -1.3100 35 1 6.2258 2.2975 -2.2409 36 1 6.6020 3.6807 -0.2174 37 1 6.4385 2.2320 0.8033 38 1 4.7589 3.5073 1.8268 39 1 3.6497 5.3614 -0.1782 40 1 5.3350 5.3839 0.3940 41 1 2.8571 5.7514 2.1384 42 1 4.5423 5.7741 2.7113 43 1 5.0155 7.7135 1.2398 44 1 3.3303 7.6903 0.6674 45 1 3.9633 11.2370 1.4321 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097165628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:22 Heat of formation + Delta-G solvation = -72.809104 kcal Electronic energy + Delta-G solvation = -21250.517776 eV Core-core repulsion = 18200.104578 eV Total energy + Delta-G solvation = -3050.413197 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -39.00436 -35.68938 -35.25232 -33.36968 -32.83156 -31.35526 -31.01838 -28.63566 -25.68788 -23.84461 -23.02269 -22.50199 -21.45183 -20.45685 -19.72687 -17.25937 -16.31359 -16.17992 -15.29191 -15.19176 -14.98982 -14.78983 -14.35961 -14.32558 -14.15844 -13.59193 -13.39158 -13.05327 -12.84161 -12.45664 -12.35970 -12.17480 -11.96094 -11.62376 -11.49399 -11.44570 -11.29218 -11.22937 -10.97220 -10.79192 -10.75317 -10.57025 -10.48189 -10.31988 -9.65976 -9.54546 -9.23387 -8.98540 -8.26863 -8.08140 -7.96879 -5.92732 -3.94004 1.61334 2.77884 3.39282 3.42468 3.46406 3.96491 4.24056 4.52322 4.54745 4.70605 4.79591 4.84072 4.91599 4.96718 5.04887 5.20742 5.25407 5.30006 5.36185 5.42990 5.52833 5.58640 5.64967 5.73837 5.80108 5.85624 5.87768 5.90597 5.91778 5.93684 5.98067 6.13381 6.18777 6.41948 6.83776 6.88125 7.24757 7.42698 7.67464 7.77091 7.93025 8.08579 8.52952 9.12932 9.69436 11.18788 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.003564 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.800084 B = 7854.451311 C = 9043.869174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.472 4.472 3 S 1.257 4.743 4 O -0.807 6.807 5 C -0.401 4.401 6 H 0.086 0.914 7 C -0.094 4.094 8 C -0.116 4.116 9 C -0.115 4.115 10 C -0.144 4.144 11 C 0.111 3.889 12 H 0.086 0.914 13 N -0.684 5.684 14 C 0.062 3.938 15 C -0.108 4.108 16 C 0.023 3.977 17 C -0.517 4.517 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.892 3.108 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.339 0.661 39 H 0.067 0.933 40 H 0.024 0.976 41 H 0.058 0.942 42 H 0.042 0.958 43 H 0.012 0.988 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -23.885 -11.400 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.607 4.607 3 S 1.453 4.547 4 O -0.802 6.802 5 C -0.518 4.518 6 H 0.105 0.895 7 C -0.132 4.132 8 C -0.155 4.155 9 C -0.153 4.153 10 C -0.184 4.184 11 C -0.001 4.001 12 H 0.104 0.896 13 N -0.314 5.314 14 C -0.066 4.066 15 C -0.146 4.146 16 C -0.014 4.014 17 C -0.556 4.556 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.157 0.843 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.031 0.969 44 H 0.035 0.965 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.464 -22.905 -11.567 25.665 hybrid contribution 1.637 -0.481 2.748 3.234 sum 1.173 -23.386 -8.820 25.021 Atomic orbital electron populations 1.21317 0.92583 1.02454 1.02634 1.27862 1.03627 1.22682 1.06521 1.70714 0.85661 0.84995 1.13329 1.93212 1.74951 1.61922 1.50101 1.27588 1.20255 1.00862 1.03089 0.89525 1.21275 0.96452 0.98546 0.96968 1.21518 0.95185 0.97160 1.01587 1.21472 0.99788 0.95496 0.98580 1.22245 0.97052 1.00216 0.98911 1.21166 0.92424 0.90849 0.95634 0.89552 1.60697 1.60005 1.05269 1.05406 1.22129 0.98689 0.85683 1.00094 1.21618 1.00797 0.97075 0.95075 1.19054 0.96881 0.88636 0.96849 1.21245 1.44220 0.91187 0.98903 0.92780 1.25018 0.95510 0.98084 0.95887 1.69960 1.48449 1.09625 1.25730 0.86660 0.79236 0.79072 0.83060 1.20339 1.21326 1.20204 0.92250 0.92274 0.91565 0.87159 0.90474 0.91491 0.90387 0.92386 0.91872 0.92272 0.91581 0.91507 0.92163 0.84295 0.91444 0.95747 0.92273 0.93926 0.96925 0.96542 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.92 37.16 0.37 -0.74 16 2 C -0.47 -3.94 6.04 37.16 0.22 -3.71 16 3 S 1.26 13.19 12.47 -107.50 -1.34 11.85 16 4 O -0.81 -14.39 17.27 -35.23 -0.61 -15.00 16 5 C -0.40 -3.91 2.41 -26.73 -0.06 -3.97 16 6 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 7 C -0.09 -0.61 4.95 -26.73 -0.13 -0.75 16 8 C -0.12 -0.82 5.92 -26.74 -0.16 -0.98 16 9 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 10 C -0.14 -1.52 5.17 -26.73 -0.14 -1.65 16 11 C 0.11 1.28 1.91 -67.71 -0.13 1.15 16 12 H 0.09 0.92 7.80 -51.93 -0.41 0.52 16 13 N -0.68 -10.66 5.08 -106.72 -0.54 -11.21 16 14 C 0.06 1.12 5.48 -3.82 -0.02 1.10 16 15 C -0.11 -2.41 5.41 -26.73 -0.14 -2.56 16 16 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 17 C -0.52 -15.40 9.11 -34.44 -0.31 -15.71 16 18 H 0.05 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.90 -27.71 13.29 55.43 0.74 -26.98 16 21 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.11 0.59 6.90 -51.92 -0.36 0.24 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.35 6.51 -51.93 -0.34 0.01 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.77 7.46 -51.93 -0.39 0.39 16 37 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 38 H 0.34 5.31 8.47 -39.29 -0.33 4.98 16 39 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 40 H 0.02 0.43 7.44 -51.93 -0.39 0.04 16 41 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -36.03 362.45 -10.72 -46.76 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -8.51 Total: -1.49 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -0.90 Total: -26.87 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.19 Total: -38.18 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.61 Total: -15.00 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 13.19 SS G_CDS: -1.34 Total: 11.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.03 -10.72 -46.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097165628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.051 kcal (2) G-P(sol) polarization free energy of solvation -36.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds