Wall clock time and date at job start Tue Mar 31 2020 02:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81398 * 109.47419 * 2 1 4 4 O 1.42102 * 109.46411 * 63.61098 * 3 2 1 5 5 C 1.81399 * 103.00247 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46809 * 294.99844 * 5 3 2 7 7 C 1.52999 * 109.47080 * 55.00247 * 5 3 2 8 8 C 1.52994 * 109.46962 * 179.97438 * 7 5 3 9 9 C 1.52992 * 109.47568 * 300.00188 * 8 7 5 10 10 C 1.53003 * 109.47466 * 59.99504 * 9 8 7 11 11 C 1.52994 * 109.47132 * 300.00763 * 10 9 8 12 12 H 1.09003 * 109.47340 * 299.99330 * 11 10 9 13 13 N 1.46906 * 109.47113 * 179.97438 * 11 10 9 14 14 C 1.46901 * 110.99793 * 84.99675 * 13 11 10 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46756 * 59.99920 * 21 19 17 23 23 H 1.48490 * 109.47381 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47117 * 300.00527 * 21 19 17 25 25 H 1.09001 * 109.47351 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47205 * 299.99554 * 1 2 3 27 27 H 1.09002 * 109.47035 * 60.00144 * 1 2 3 28 28 H 1.09002 * 109.47135 * 240.00085 * 2 1 3 29 29 H 1.08994 * 109.47084 * 120.00518 * 2 1 3 30 30 H 1.09005 * 109.46939 * 299.99768 * 7 5 3 31 31 H 1.09003 * 109.46965 * 59.99754 * 7 5 3 32 32 H 1.09003 * 109.47340 * 60.00157 * 8 7 5 33 33 H 1.08996 * 109.47268 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47812 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.47108 * 299.99899 * 9 8 7 36 36 H 1.08995 * 109.47249 * 179.97438 * 10 9 8 37 37 H 1.09003 * 109.46461 * 60.00631 * 10 9 8 38 38 H 1.00898 * 110.99995 * 321.04597 * 13 11 10 39 39 H 1.09001 * 109.46874 * 60.00179 * 14 13 11 40 40 H 1.08992 * 109.47407 * 300.00197 * 14 13 11 41 41 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 42 42 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 43 43 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 44 44 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 45 45 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7311 2.3552 1.2002 5 6 3.9371 1.5057 -0.0008 6 1 4.2495 1.0331 0.9304 7 6 4.3501 0.6264 -1.1828 8 6 5.8704 0.4545 -1.1838 9 6 6.5386 1.8250 -1.3098 10 6 6.1256 2.7045 -0.1279 11 6 4.6053 2.8764 -0.1269 12 1 4.2924 3.3488 -1.0580 13 7 4.2087 3.7203 1.0083 14 6 4.3065 5.1451 0.6644 15 6 3.8858 5.9903 1.8684 16 6 3.9870 7.4743 1.5101 17 6 3.5733 8.3069 2.6961 18 1 3.2690 7.8257 3.6139 19 6 3.5842 9.6829 2.6100 20 7 3.9552 10.2688 1.4926 21 14 3.0706 10.7149 4.0799 22 1 3.9650 10.4202 5.2283 23 1 3.1702 12.1552 3.7326 24 1 1.6692 10.3895 4.4478 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8737 -0.3500 -1.0931 31 1 4.0376 1.0991 -2.1139 32 1 6.1833 -0.0180 -0.2526 33 1 6.1646 -0.1723 -2.0255 34 1 7.6217 1.7026 -1.3100 35 1 6.2258 2.2975 -2.2409 36 1 6.6020 3.6807 -0.2174 37 1 6.4385 2.2320 0.8033 38 1 4.7589 3.5073 1.8268 39 1 3.6497 5.3614 -0.1782 40 1 5.3350 5.3839 0.3940 41 1 2.8571 5.7514 2.1384 42 1 4.5423 5.7741 2.7113 43 1 5.0155 7.7135 1.2398 44 1 3.3303 7.6903 0.6674 45 1 3.9633 11.2370 1.4321 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097165628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:18 Heat of formation + Delta-G solvation = -97.662328 kcal Electronic energy + Delta-G solvation = -21251.595492 eV Core-core repulsion = 18200.104578 eV Total energy + Delta-G solvation = -3051.490914 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -39.88494 -37.02273 -36.43543 -35.23684 -33.60639 -33.07081 -31.75528 -29.97061 -27.47274 -24.75142 -24.21795 -23.61956 -22.42301 -21.99677 -20.78531 -18.51203 -18.13686 -17.15389 -16.61289 -16.38749 -16.13436 -15.86069 -15.77647 -15.31395 -15.05673 -14.59106 -14.41343 -14.27284 -14.07587 -13.84136 -13.37493 -13.35155 -13.26729 -13.05305 -12.72373 -12.62659 -12.50643 -12.30480 -12.21787 -12.06378 -11.98403 -11.77930 -11.56081 -11.50512 -11.38177 -11.26461 -10.92519 -10.56783 -10.51685 -9.24825 -8.92236 -8.22093 -6.33058 0.78580 1.36882 1.40601 1.48740 1.98663 2.39210 3.07158 3.10185 3.22467 3.73823 3.93799 4.08596 4.10184 4.17428 4.23330 4.28285 4.33753 4.40224 4.49332 4.52913 4.60663 4.63987 4.70445 4.86934 4.93628 4.95997 5.00881 5.04897 5.08426 5.14383 5.20587 5.23571 5.26779 5.29385 5.34115 5.40247 5.49074 5.57070 5.73023 5.83444 6.11391 6.27418 6.39073 6.82066 7.35506 8.89589 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.003564 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.800084 B = 7854.451311 C = 9043.869174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.457 4.457 3 S 1.274 4.726 4 O -0.893 6.893 5 C -0.387 4.387 6 H 0.068 0.932 7 C -0.094 4.094 8 C -0.115 4.115 9 C -0.113 4.113 10 C -0.141 4.141 11 C 0.105 3.895 12 H 0.100 0.900 13 N -0.695 5.695 14 C 0.077 3.923 15 C -0.094 4.094 16 C 0.030 3.970 17 C -0.549 4.549 18 H 0.051 0.949 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.270 1.270 25 H 0.076 0.924 26 H 0.027 0.973 27 H 0.089 0.911 28 H 0.154 0.846 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.335 0.665 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.039 0.961 42 H 0.040 0.960 43 H -0.005 1.005 44 H -0.004 1.004 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 -25.775 -12.904 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.594 4.594 3 S 1.474 4.526 4 O -0.888 6.888 5 C -0.506 4.506 6 H 0.087 0.913 7 C -0.133 4.133 8 C -0.153 4.153 9 C -0.151 4.151 10 C -0.181 4.181 11 C -0.006 4.006 12 H 0.118 0.882 13 N -0.325 5.325 14 C -0.052 4.052 15 C -0.132 4.132 16 C -0.008 4.008 17 C -0.587 4.587 18 H 0.069 0.931 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.789 3.211 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.195 1.195 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.172 0.828 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.153 0.847 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.013 0.987 44 H 0.014 0.986 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.308 -24.793 -13.074 28.031 hybrid contribution 1.620 0.002 3.152 3.544 sum 1.312 -24.791 -9.922 26.735 Atomic orbital electron populations 1.21434 0.92579 1.03482 1.02370 1.27719 1.03631 1.19997 1.08044 1.69572 0.85706 0.86047 1.11234 1.93107 1.77208 1.66025 1.52487 1.27459 1.18634 1.00254 1.04218 0.91288 1.21433 0.96461 0.99106 0.96291 1.21527 0.95178 0.96500 1.02106 1.21488 1.00242 0.95790 0.97615 1.22183 0.95929 1.00070 0.99918 1.21365 0.93513 0.91190 0.94493 0.88213 1.60653 1.60740 1.04163 1.06902 1.21818 0.98763 0.86803 0.97779 1.21372 0.99660 0.95113 0.97030 1.18930 0.94999 0.91393 0.95473 1.21648 1.45115 0.92324 0.99636 0.93063 1.25951 0.95111 0.99338 0.99154 1.70076 1.48842 1.10260 1.27801 0.85513 0.79072 0.77397 0.79142 1.19335 1.20127 1.19467 0.90516 0.95330 0.89246 0.82818 0.91713 0.89141 0.87562 0.93402 0.89514 0.91916 0.90364 0.92970 0.93127 0.84730 0.91189 0.95210 0.94208 0.94116 0.98671 0.98598 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.92 71.98 0.71 -1.42 16 2 C -0.46 -6.50 6.04 71.98 0.43 -6.06 16 3 S 1.27 25.89 12.47 -56.49 -0.70 25.18 16 4 O -0.89 -33.38 17.27 -148.98 -2.57 -35.96 16 5 C -0.39 -6.98 2.41 30.59 0.07 -6.90 16 6 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 7 C -0.09 -0.86 4.95 30.59 0.15 -0.71 16 8 C -0.11 -1.22 5.92 30.59 0.18 -1.03 16 9 C -0.11 -1.56 5.92 30.59 0.18 -1.38 16 10 C -0.14 -2.85 5.17 30.59 0.16 -2.70 16 11 C 0.10 2.35 1.91 44.91 0.09 2.44 16 12 H 0.10 1.98 7.80 -2.39 -0.02 1.96 16 13 N -0.70 -22.29 5.08 -491.57 -2.50 -24.79 16 14 C 0.08 2.86 5.48 86.30 0.47 3.34 16 15 C -0.09 -4.40 5.41 30.59 0.17 -4.23 16 16 C 0.03 1.67 4.97 29.85 0.15 1.82 16 17 C -0.55 -33.63 9.11 25.60 0.23 -33.40 16 18 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 19 C 0.00 0.15 5.46 84.65 0.46 0.61 16 20 N -0.93 -58.22 13.29 21.45 0.28 -57.94 16 21 Si 0.96 46.45 29.54 68.60 2.03 48.47 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 25 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.15 0.87 6.90 -2.39 -0.02 0.86 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 0.46 6.51 -2.38 -0.02 0.45 16 31 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 1.20 7.46 -2.39 -0.02 1.18 16 37 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 38 H 0.34 10.98 8.47 -89.70 -0.76 10.22 16 39 H 0.07 2.54 8.06 -2.39 -0.02 2.52 16 40 H 0.03 1.06 7.44 -2.39 -0.02 1.05 16 41 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 43 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 45 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -81.83 362.45 0.17 -81.66 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.17 Total: 13.00 kcal Atomic # 6 Polarization: -53.09 SS G_CDS: 3.46 Total: -49.63 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.21 Total: -82.73 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -2.57 Total: -35.96 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 25.89 SS G_CDS: -0.70 Total: 25.18 kcal Total: -81.83 0.17 -81.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097165628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.004 kcal (2) G-P(sol) polarization free energy of solvation -81.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.63 seconds