Wall clock time and date at job start Tue Mar 31 2020 03:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28791 * 124.75429 * 2 1 4 4 C 1.32523 * 117.12908 * 180.02562 * 3 2 1 5 5 C 1.48327 * 122.96953 * 179.97438 * 4 3 2 6 6 C 1.39518 * 120.08320 * 185.02488 * 5 4 3 7 7 C 1.38083 * 120.04042 * 179.97438 * 6 5 4 8 8 C 1.38172 * 120.20441 * 0.02562 * 7 6 5 9 9 C 1.39132 * 120.16916 * 359.97225 * 8 7 6 10 10 N 1.39525 * 120.02554 * 180.02562 * 9 8 7 11 11 C 1.34770 * 119.99977 * 213.33936 * 10 9 8 12 12 O 1.21752 * 120.00179 * 5.27223 * 11 10 9 13 13 C 1.46129 * 119.99842 * 185.27108 * 11 10 9 14 14 H 1.07991 * 120.00457 * 0.02562 * 13 11 10 15 15 C 1.40124 * 119.99655 * 180.02562 * 13 11 10 16 16 N 1.30632 * 120.00677 * 0.02562 * 15 13 11 17 17 Si 1.86809 * 119.99881 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46981 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46930 * 119.99751 * 17 15 13 20 20 H 1.48493 * 109.47322 * 240.00154 * 17 15 13 21 21 C 1.38821 * 119.95479 * 359.76670 * 9 8 7 22 22 C 1.34868 * 114.06166 * 0.27070 * 4 3 2 23 23 S 1.70914 * 124.74678 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47091 * 89.99995 * 1 2 3 25 25 H 1.09001 * 109.47137 * 210.00084 * 1 2 3 26 26 H 1.09006 * 109.46631 * 330.00197 * 1 2 3 27 27 H 1.07997 * 119.98097 * 359.97438 * 6 5 4 28 28 H 1.07995 * 119.89897 * 180.02562 * 7 6 5 29 29 H 1.08004 * 119.91754 * 179.97438 * 8 7 6 30 30 H 0.96995 * 119.99734 * 33.33318 * 10 9 8 31 31 H 0.97001 * 120.00883 * 180.02562 * 16 15 13 32 32 H 1.07998 * 120.10352 * 180.27751 * 21 9 8 33 33 H 1.08003 * 126.06205 * 179.71173 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2412 1.0581 0.0000 4 6 3.5547 0.8823 -0.0005 5 6 4.5199 2.0086 -0.0012 6 6 5.8881 1.7571 -0.1074 7 6 6.7858 2.8063 -0.1085 8 6 6.3339 4.1078 -0.0039 9 6 4.9714 4.3685 0.1025 10 7 4.5184 5.6840 0.2074 11 6 3.4226 5.9629 0.9408 12 8 2.8841 5.0841 1.5891 13 6 2.8809 7.3199 0.9580 14 1 3.3583 8.0993 0.3827 15 6 1.7419 7.6099 1.7210 16 7 1.1646 6.6674 2.4173 17 14 1.0497 9.3449 1.7435 18 1 1.8806 10.2206 0.8785 19 1 -0.3454 9.3278 1.2352 20 1 1.0636 9.8653 3.1342 21 6 4.0625 3.3192 0.0988 22 6 3.9364 -0.4112 -0.0068 23 16 2.4812 -1.4044 -0.0006 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 6.2453 0.7412 -0.1889 28 1 7.8443 2.6090 -0.1912 29 1 7.0402 4.9249 -0.0047 30 1 4.9921 6.3978 -0.2474 31 1 0.3760 6.8680 2.9452 32 1 3.0041 3.5191 0.1767 33 1 4.9536 -0.7740 -0.0127 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119796869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:38 Heat of formation + Delta-G solvation = 3.621343 kcal Electronic energy + Delta-G solvation = -19357.920915 eV Core-core repulsion = 16281.038810 eV Total energy + Delta-G solvation = -3076.882105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27099 -40.34714 -38.58865 -35.43828 -34.58827 -33.58871 -31.39802 -30.73132 -29.05573 -28.07756 -25.36371 -23.89945 -22.88894 -21.56610 -20.61273 -19.59088 -18.76888 -17.69716 -17.52833 -16.88365 -16.25243 -16.04757 -15.95150 -15.51857 -15.03723 -14.75430 -14.49178 -14.25685 -14.10165 -13.88084 -13.28248 -13.21256 -13.10608 -12.83135 -12.80944 -12.76706 -12.33303 -12.12193 -12.00702 -11.16933 -10.92141 -10.57395 -10.42187 -10.34852 -9.91338 -9.10149 -8.72401 -8.37913 -6.96848 -0.47203 0.39847 0.40924 0.60001 0.67187 1.36954 1.37631 1.56074 1.91746 2.19346 2.39226 2.91741 3.06584 3.09312 3.57629 3.84013 4.04248 4.23017 4.27464 4.39925 4.41457 4.53890 4.59563 4.75379 4.87311 4.90059 5.07138 5.20940 5.23097 5.50519 5.54464 5.68093 5.79870 5.93229 6.16034 6.41262 6.75756 6.86378 7.34191 8.35629 8.56290 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.004707 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.372488 B = 5947.768473 C = 7487.376702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.028 3.972 3 N -0.518 5.518 4 C 0.083 3.917 5 C -0.028 4.028 6 C -0.134 4.134 7 C -0.087 4.087 8 C -0.161 4.161 9 C 0.150 3.850 10 N -0.694 5.694 11 C 0.525 3.475 12 O -0.605 6.605 13 C -0.566 4.566 14 H 0.094 0.906 15 C 0.028 3.972 16 N -0.816 5.816 17 Si 1.004 2.996 18 H -0.244 1.244 19 H -0.268 1.268 20 H -0.266 1.266 21 C -0.132 4.132 22 C -0.249 4.249 23 S 0.189 5.811 24 H 0.102 0.898 25 H 0.113 0.887 26 H 0.068 0.932 27 H 0.159 0.841 28 H 0.172 0.828 29 H 0.147 0.853 30 H 0.407 0.593 31 H 0.277 0.723 32 H 0.090 0.910 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.337 -13.908 -6.865 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.250 4.250 3 N -0.233 5.233 4 C -0.047 4.047 5 C -0.031 4.031 6 C -0.154 4.154 7 C -0.105 4.105 8 C -0.182 4.182 9 C 0.053 3.947 10 N -0.339 5.339 11 C 0.332 3.668 12 O -0.491 6.491 13 C -0.602 4.602 14 H 0.112 0.888 15 C -0.188 4.188 16 N -0.445 5.445 17 Si 0.822 3.178 18 H -0.166 1.166 19 H -0.193 1.193 20 H -0.191 1.191 21 C -0.154 4.154 22 C -0.387 4.387 23 S 0.444 5.556 24 H 0.120 0.880 25 H 0.131 0.869 26 H 0.087 0.913 27 H 0.177 0.823 28 H 0.190 0.810 29 H 0.165 0.835 30 H 0.243 0.757 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 5.252 -15.108 -6.277 17.183 hybrid contribution -0.026 2.086 0.115 2.089 sum 5.226 -13.022 -6.162 15.325 Atomic orbital electron populations 1.20630 0.83520 1.04802 1.05036 1.27564 1.03426 0.91456 1.02605 1.66179 1.05879 1.34048 1.17215 1.19016 0.88651 0.93276 1.03714 1.18242 0.93177 0.89712 1.01969 1.21317 0.89846 1.01176 1.03078 1.21229 1.01101 0.90441 0.97727 1.21331 0.91917 0.99417 1.05571 1.18239 0.93515 0.85403 0.97570 1.43682 1.31205 1.06195 1.52821 1.18816 0.78990 0.90520 0.78477 1.90633 1.61428 1.50032 1.46973 1.21436 1.13322 0.94167 1.31261 0.88815 1.27070 0.95715 1.03860 0.92180 1.70185 1.16722 1.36196 1.21377 0.84888 0.78343 0.75282 0.79268 1.16641 1.19334 1.19091 1.21145 0.99338 0.92639 1.02318 1.27393 1.05412 0.94490 1.11451 1.83235 0.95214 1.09833 1.67351 0.87978 0.86872 0.91329 0.82339 0.81033 0.83531 0.75681 0.91338 0.89139 0.77021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.88 10.46 71.24 0.75 -1.13 16 2 C 0.03 0.86 7.36 88.56 0.65 1.51 16 3 N -0.52 -21.50 9.92 -180.56 -1.79 -23.30 16 4 C 0.08 3.12 6.64 40.95 0.27 3.39 16 5 C -0.03 -1.12 5.87 -20.06 -0.12 -1.24 16 6 C -0.13 -3.94 9.49 22.54 0.21 -3.73 16 7 C -0.09 -2.34 10.03 22.22 0.22 -2.11 16 8 C -0.16 -5.41 9.96 22.47 0.22 -5.19 16 9 C 0.15 6.83 6.27 38.27 0.24 7.07 16 10 N -0.69 -34.01 5.32 -307.65 -1.64 -35.65 16 11 C 0.53 32.01 7.47 86.29 0.64 32.66 16 12 O -0.61 -42.46 12.71 -4.52 -0.06 -42.52 16 13 C -0.57 -32.80 9.53 24.78 0.24 -32.56 16 14 H 0.09 4.80 7.85 -2.92 -0.02 4.78 16 15 C 0.03 1.57 5.50 85.33 0.47 2.04 16 16 N -0.82 -51.17 11.82 21.85 0.26 -50.91 16 17 Si 1.00 41.39 29.56 68.60 2.03 43.42 16 18 H -0.24 -9.19 7.11 99.48 0.71 -8.49 16 19 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 21 C -0.13 -6.63 8.23 22.63 0.19 -6.44 16 22 C -0.25 -6.56 10.62 67.05 0.71 -5.84 16 23 S 0.19 4.15 23.16 -56.49 -1.31 2.84 16 24 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.16 3.17 6.68 -2.91 -0.02 3.15 16 28 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 30 H 0.41 16.61 8.79 -92.71 -0.82 15.79 16 31 H 0.28 15.64 8.29 -92.71 -0.77 14.87 16 32 H 0.09 5.58 6.07 -2.91 -0.02 5.56 16 33 H 0.21 3.77 6.92 -2.91 -0.02 3.75 16 Total: -1.00 -88.09 306.39 2.54 -85.55 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.35 Total: 32.14 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.70 Total: -11.57 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -3.17 Total: -109.86 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.06 Total: -42.52 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.31 Total: 2.84 kcal Total: -88.09 2.54 -85.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119796869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.172 kcal (2) G-P(sol) polarization free energy of solvation -88.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds