Wall clock time and date at job start Tue Mar 31 2020 02:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 110.35176 * 2 1 4 4 C 1.54943 * 110.30777 * 122.14201 * 2 1 3 5 5 C 1.55307 * 100.94149 * 155.36433 * 4 2 1 6 6 H 1.08997 * 110.84994 * 84.26030 * 5 4 2 7 7 N 1.46901 * 110.84693 * 207.67673 * 5 4 2 8 8 C 1.46896 * 110.99934 * 273.54418 * 7 5 4 9 9 C 1.53000 * 109.47292 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47509 * 180.02562 * 9 8 7 11 11 S 1.81002 * 109.47461 * 179.97438 * 10 9 8 12 12 C 1.76203 * 99.99786 * 179.97438 * 11 10 9 13 13 H 1.07991 * 120.00453 * 359.72125 * 12 11 10 14 14 C 1.38805 * 119.99580 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00030 * 359.71792 * 14 12 11 16 16 Si 1.86798 * 119.99665 * 179.72429 * 14 12 11 17 17 H 1.48490 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 119.99872 * 16 14 12 19 19 H 1.48504 * 109.46636 * 239.99431 * 16 14 12 20 20 C 1.54382 * 102.25099 * 325.85999 * 5 4 2 21 21 C 1.53007 * 109.82834 * 140.86964 * 20 5 4 22 22 C 1.52993 * 109.83467 * 261.84518 * 20 5 4 23 23 O 1.43238 * 107.58612 * 21.36354 * 20 5 4 24 24 H 1.09001 * 109.47558 * 297.85836 * 1 2 3 25 25 H 1.09003 * 109.47345 * 57.86135 * 1 2 3 26 26 H 1.09001 * 109.47120 * 177.85686 * 1 2 3 27 27 H 1.09004 * 109.47299 * 182.14538 * 3 2 1 28 28 H 1.09008 * 109.47129 * 302.13816 * 3 2 1 29 29 H 1.08997 * 109.47792 * 62.14240 * 3 2 1 30 30 H 1.09003 * 111.12911 * 37.44221 * 4 2 1 31 31 H 1.09006 * 111.12216 * 273.27516 * 4 2 1 32 32 H 1.00895 * 111.00433 * 149.58981 * 7 5 4 33 33 H 1.08995 * 109.47478 * 60.00140 * 8 7 5 34 34 H 1.09002 * 109.47244 * 299.99718 * 8 7 5 35 35 H 1.08996 * 109.47321 * 59.99800 * 9 8 7 36 36 H 1.09004 * 109.47163 * 299.99815 * 9 8 7 37 37 H 1.09002 * 109.47428 * 59.99234 * 10 9 8 38 38 H 1.09004 * 109.46652 * 300.00000 * 10 9 8 39 39 H 0.97000 * 119.99668 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.46422 * 60.00694 * 21 20 5 41 41 H 1.08997 * 109.47032 * 180.02562 * 21 20 5 42 42 H 1.08998 * 109.47083 * 300.00624 * 21 20 5 43 43 H 1.09007 * 109.46796 * 60.00230 * 22 20 5 44 44 H 1.09000 * 109.47423 * 179.97438 * 22 20 5 45 45 H 1.08998 * 109.47234 * 300.00052 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0620 1.4345 0.0000 4 6 2.0677 -0.7731 1.2304 5 6 3.4699 -1.2024 0.7190 6 1 4.1981 -0.4053 0.8684 7 7 3.9102 -2.4397 1.3773 8 6 4.5833 -2.1480 2.6500 9 6 5.0270 -3.4580 3.3042 10 6 5.7276 -3.1543 4.6301 11 16 6.2517 -4.7041 5.4044 12 6 7.0061 -4.0752 6.8674 13 1 7.0369 -3.0103 7.0442 14 6 7.5665 -4.9483 7.7895 15 7 7.5293 -6.2463 7.5738 16 14 8.3730 -4.2812 9.3367 17 1 8.2837 -2.7990 9.3419 18 1 7.6770 -4.8236 10.5311 19 1 9.8001 -4.6909 9.3669 20 6 3.2112 -1.4420 -0.7840 21 6 4.3991 -0.9325 -1.6028 22 6 3.0024 -2.9353 -1.0433 23 8 2.0286 -0.7168 -1.1406 24 1 -0.3634 0.4802 0.9085 25 1 -0.3634 0.5467 -0.8702 26 1 -0.3633 -1.0270 -0.0384 27 1 3.1513 1.4180 -0.0385 28 1 1.6758 1.9653 -0.8703 29 1 1.7382 1.9422 0.9085 30 1 1.4470 -1.6416 1.4508 31 1 2.1495 -0.1202 2.0995 32 1 4.5059 -2.9808 0.7689 33 1 3.8950 -1.6250 3.3137 34 1 5.4557 -1.5215 2.4643 35 1 5.7156 -3.9807 2.6404 36 1 4.1549 -4.0850 3.4899 37 1 5.0387 -2.6317 5.2937 38 1 6.5996 -2.5271 4.4448 39 1 7.9206 -6.8564 8.2185 40 1 5.3018 -1.4651 -1.3034 41 1 4.2102 -1.1040 -2.6625 42 1 4.5313 0.1349 -1.4257 43 1 2.1448 -3.2871 -0.4697 44 1 2.8199 -3.0977 -2.1055 45 1 3.8931 -3.4849 -0.7391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132587500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:40 Heat of formation + Delta-G solvation = -70.031917 kcal Electronic energy + Delta-G solvation = -21045.764659 eV Core-core repulsion = 17995.471890 eV Total energy + Delta-G solvation = -3050.292770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67770 -36.57448 -34.53340 -33.05212 -32.42722 -30.88263 -28.80868 -27.97292 -27.20218 -25.75078 -24.84491 -22.67228 -21.24757 -20.60621 -19.55885 -17.44897 -16.36102 -16.11994 -15.79502 -15.13480 -14.82468 -14.76620 -14.48504 -13.98541 -13.75056 -13.64008 -13.29530 -13.06588 -12.85492 -12.59626 -12.41569 -12.25709 -12.10037 -12.05911 -11.94715 -11.70777 -11.63182 -11.24110 -11.09996 -11.04078 -10.85157 -10.79072 -10.63915 -10.52268 -10.40787 -9.75490 -9.52172 -9.06892 -8.53333 -8.29879 -6.52801 -6.23176 -3.93226 3.20482 3.21552 3.29506 3.41577 3.54416 4.01184 4.22423 4.23306 4.46886 4.68152 4.74826 4.84298 4.88521 5.00552 5.12854 5.21591 5.23875 5.28364 5.33989 5.38763 5.42580 5.47367 5.52083 5.58321 5.60676 5.64237 5.69395 5.73413 5.75853 5.87746 5.89333 5.92682 6.00350 6.07191 6.09207 6.20382 6.32328 6.58699 6.72421 6.93719 7.00907 7.26940 7.60561 8.36616 9.23257 10.85081 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.002659 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.624610 B =10529.532247 C =10860.561758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.099 3.901 3 C -0.162 4.162 4 C -0.134 4.134 5 C 0.062 3.938 6 H 0.058 0.942 7 N -0.675 5.675 8 C 0.062 3.938 9 C -0.095 4.095 10 C -0.112 4.112 11 S -0.133 6.133 12 C -0.515 4.515 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.869 5.869 16 Si 0.918 3.082 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.103 3.897 21 C -0.157 4.157 22 C -0.144 4.144 23 O -0.362 6.362 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.343 0.657 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.267 0.733 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.777 12.819 -17.458 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.060 3.940 3 C -0.219 4.219 4 C -0.172 4.172 5 C -0.048 4.048 6 H 0.076 0.924 7 N -0.309 5.309 8 C -0.068 4.068 9 C -0.134 4.134 10 C -0.261 4.261 11 S 0.096 5.904 12 C -0.664 4.664 13 H 0.090 0.910 14 C -0.139 4.139 15 N -0.505 5.505 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.063 3.937 21 C -0.214 4.214 22 C -0.201 4.201 23 O -0.281 6.281 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.165 0.835 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.533 11.444 -17.649 23.989 hybrid contribution 1.720 2.069 1.366 3.017 sum -9.812 13.513 -16.284 23.325 Atomic orbital electron populations 1.21831 0.92937 1.02867 1.02212 1.22283 0.94540 0.91631 0.85542 1.22221 1.01501 0.95852 1.02328 1.23339 0.95949 1.00603 0.97331 1.23044 0.96878 0.92302 0.92609 0.92437 1.60708 1.45933 1.18100 1.06127 1.22086 0.96300 0.97820 0.90604 1.21238 1.00557 0.96206 0.95371 1.23219 1.01379 1.03254 0.98284 1.84639 1.74546 1.06870 1.24393 1.22732 1.42598 0.95228 1.05816 0.90955 1.25024 0.95726 0.94688 0.98423 1.70036 1.43083 1.01592 1.35808 0.86111 0.78865 0.79008 0.81527 1.19628 1.20552 1.20582 1.22098 0.85894 0.92926 0.92804 1.22167 0.96937 1.01423 1.00915 1.21944 1.03025 0.93494 1.01677 1.88469 1.41832 1.63889 1.33951 0.91306 0.92069 0.91743 0.92394 0.91964 0.91612 0.89156 0.90422 0.83534 0.91091 0.95373 0.91840 0.90671 0.92137 0.92393 0.92364 0.91659 0.91670 0.92324 0.91247 0.92469 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.95 37.15 0.33 -0.81 16 2 C 0.10 0.93 1.21 -89.60 -0.11 0.82 16 3 C -0.16 -1.33 8.84 37.16 0.33 -1.00 16 4 C -0.13 -1.33 5.69 -24.48 -0.14 -1.47 16 5 C 0.06 0.64 2.30 -65.76 -0.15 0.49 16 6 H 0.06 0.60 7.31 -51.93 -0.38 0.22 16 7 N -0.67 -7.62 5.59 -104.68 -0.58 -8.20 16 8 C 0.06 0.81 5.55 -3.83 -0.02 0.79 16 9 C -0.09 -1.52 5.48 -26.73 -0.15 -1.67 16 10 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 11 S -0.13 -3.48 21.44 -107.50 -2.30 -5.79 16 12 C -0.52 -14.84 9.50 30.94 0.29 -14.55 16 13 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 14 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 15 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 16 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.10 1.02 1.19 -89.90 -0.11 0.91 16 21 C -0.16 -1.38 8.75 37.16 0.33 -1.06 16 22 C -0.14 -1.38 8.07 37.15 0.30 -1.08 16 23 O -0.36 -4.01 10.04 -35.23 -0.35 -4.36 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.49 7.31 -51.93 -0.38 0.11 16 28 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.98 8.06 -51.93 -0.42 0.56 16 31 H 0.08 0.73 8.03 -51.93 -0.42 0.31 16 32 H 0.34 3.63 6.44 -39.29 -0.25 3.38 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 38 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.61 6.25 -51.93 -0.32 0.29 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -30.81 367.35 -9.44 -40.25 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -8.47 Total: 0.11 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 1.02 Total: -18.76 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.15 Total: -33.54 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.35 Total: -4.36 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.30 Total: -5.79 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.81 -9.44 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132587500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.782 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds