Wall clock time and date at job start Tue Mar 31 2020 02:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 110.35176 * 2 1 4 4 C 1.54943 * 110.30777 * 122.14201 * 2 1 3 5 5 C 1.55307 * 100.94149 * 155.36433 * 4 2 1 6 6 H 1.08997 * 110.84994 * 84.26030 * 5 4 2 7 7 N 1.46901 * 110.84693 * 207.67673 * 5 4 2 8 8 C 1.46896 * 110.99934 * 273.54418 * 7 5 4 9 9 C 1.53000 * 109.47292 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47509 * 180.02562 * 9 8 7 11 11 S 1.81002 * 109.47461 * 179.97438 * 10 9 8 12 12 C 1.76203 * 99.99786 * 179.97438 * 11 10 9 13 13 H 1.07991 * 120.00453 * 359.72125 * 12 11 10 14 14 C 1.38805 * 119.99580 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00030 * 359.71792 * 14 12 11 16 16 Si 1.86798 * 119.99665 * 179.72429 * 14 12 11 17 17 H 1.48490 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 119.99872 * 16 14 12 19 19 H 1.48504 * 109.46636 * 239.99431 * 16 14 12 20 20 C 1.54382 * 102.25099 * 325.85999 * 5 4 2 21 21 C 1.53007 * 109.82834 * 140.86964 * 20 5 4 22 22 C 1.52993 * 109.83467 * 261.84518 * 20 5 4 23 23 O 1.43238 * 107.58612 * 21.36354 * 20 5 4 24 24 H 1.09001 * 109.47558 * 297.85836 * 1 2 3 25 25 H 1.09003 * 109.47345 * 57.86135 * 1 2 3 26 26 H 1.09001 * 109.47120 * 177.85686 * 1 2 3 27 27 H 1.09004 * 109.47299 * 182.14538 * 3 2 1 28 28 H 1.09008 * 109.47129 * 302.13816 * 3 2 1 29 29 H 1.08997 * 109.47792 * 62.14240 * 3 2 1 30 30 H 1.09003 * 111.12911 * 37.44221 * 4 2 1 31 31 H 1.09006 * 111.12216 * 273.27516 * 4 2 1 32 32 H 1.00895 * 111.00433 * 149.58981 * 7 5 4 33 33 H 1.08995 * 109.47478 * 60.00140 * 8 7 5 34 34 H 1.09002 * 109.47244 * 299.99718 * 8 7 5 35 35 H 1.08996 * 109.47321 * 59.99800 * 9 8 7 36 36 H 1.09004 * 109.47163 * 299.99815 * 9 8 7 37 37 H 1.09002 * 109.47428 * 59.99234 * 10 9 8 38 38 H 1.09004 * 109.46652 * 300.00000 * 10 9 8 39 39 H 0.97000 * 119.99668 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.46422 * 60.00694 * 21 20 5 41 41 H 1.08997 * 109.47032 * 180.02562 * 21 20 5 42 42 H 1.08998 * 109.47083 * 300.00624 * 21 20 5 43 43 H 1.09007 * 109.46796 * 60.00230 * 22 20 5 44 44 H 1.09000 * 109.47423 * 179.97438 * 22 20 5 45 45 H 1.08998 * 109.47234 * 300.00052 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0620 1.4345 0.0000 4 6 2.0677 -0.7731 1.2304 5 6 3.4699 -1.2024 0.7190 6 1 4.1981 -0.4053 0.8684 7 7 3.9102 -2.4397 1.3773 8 6 4.5833 -2.1480 2.6500 9 6 5.0270 -3.4580 3.3042 10 6 5.7276 -3.1543 4.6301 11 16 6.2517 -4.7041 5.4044 12 6 7.0061 -4.0752 6.8674 13 1 7.0369 -3.0103 7.0442 14 6 7.5665 -4.9483 7.7895 15 7 7.5293 -6.2463 7.5738 16 14 8.3730 -4.2812 9.3367 17 1 8.2837 -2.7990 9.3419 18 1 7.6770 -4.8236 10.5311 19 1 9.8001 -4.6909 9.3669 20 6 3.2112 -1.4420 -0.7840 21 6 4.3991 -0.9325 -1.6028 22 6 3.0024 -2.9353 -1.0433 23 8 2.0286 -0.7168 -1.1406 24 1 -0.3634 0.4802 0.9085 25 1 -0.3634 0.5467 -0.8702 26 1 -0.3633 -1.0270 -0.0384 27 1 3.1513 1.4180 -0.0385 28 1 1.6758 1.9653 -0.8703 29 1 1.7382 1.9422 0.9085 30 1 1.4470 -1.6416 1.4508 31 1 2.1495 -0.1202 2.0995 32 1 4.5059 -2.9808 0.7689 33 1 3.8950 -1.6250 3.3137 34 1 5.4557 -1.5215 2.4643 35 1 5.7156 -3.9807 2.6404 36 1 4.1549 -4.0850 3.4899 37 1 5.0387 -2.6317 5.2937 38 1 6.5996 -2.5271 4.4448 39 1 7.9206 -6.8564 8.2185 40 1 5.3018 -1.4651 -1.3034 41 1 4.2102 -1.1040 -2.6625 42 1 4.5313 0.1349 -1.4257 43 1 2.1448 -3.2871 -0.4697 44 1 2.8199 -3.0977 -2.1055 45 1 3.8931 -3.4849 -0.7391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132587500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:37 Heat of formation + Delta-G solvation = -88.188873 kcal Electronic energy + Delta-G solvation = -21046.552004 eV Core-core repulsion = 17995.471890 eV Total energy + Delta-G solvation = -3051.080114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -41.45315 -37.56914 -35.35057 -34.61458 -34.09945 -31.82278 -29.66634 -28.67540 -27.88970 -27.82695 -26.13493 -23.53525 -22.49196 -21.39265 -20.39550 -19.52646 -17.19200 -17.08703 -16.90179 -16.62416 -16.22573 -16.07801 -15.51889 -15.21766 -14.82831 -14.50849 -14.37425 -14.21909 -13.70575 -13.57965 -13.49052 -13.21457 -13.08492 -13.00097 -12.94377 -12.77824 -12.75930 -12.67429 -12.52919 -12.42227 -12.21179 -11.91291 -11.72272 -11.51180 -11.42237 -11.22898 -11.15669 -10.50844 -10.31416 -9.44648 -8.66621 -8.37859 -6.13892 1.31439 1.38082 1.49305 1.74653 2.27971 2.68494 2.96433 3.04343 3.33771 3.45914 3.72945 3.96552 3.98426 4.01723 4.12223 4.15383 4.23350 4.30282 4.35957 4.47643 4.54437 4.58215 4.72925 4.74099 4.76831 4.79121 4.84068 4.88559 4.92156 4.93154 5.00625 5.03537 5.14544 5.20029 5.25325 5.30532 5.32100 5.38872 5.39656 5.42349 6.00594 6.17984 6.23470 6.38204 7.04558 8.71798 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.002659 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.624610 B =10529.532247 C =10860.561758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.095 3.905 3 C -0.159 4.159 4 C -0.134 4.134 5 C 0.065 3.935 6 H 0.061 0.939 7 N -0.676 5.676 8 C 0.076 3.924 9 C -0.083 4.083 10 C -0.087 4.087 11 S -0.199 6.199 12 C -0.537 4.537 13 H 0.072 0.928 14 C 0.014 3.986 15 N -0.908 5.908 16 Si 0.995 3.005 17 H -0.262 1.262 18 H -0.272 1.272 19 H -0.271 1.271 20 C 0.101 3.899 21 C -0.155 4.155 22 C -0.142 4.142 23 O -0.379 6.379 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.348 0.652 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.271 0.729 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 14.515 -17.458 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.056 3.944 3 C -0.216 4.216 4 C -0.172 4.172 5 C -0.046 4.046 6 H 0.079 0.921 7 N -0.311 5.311 8 C -0.055 4.055 9 C -0.122 4.122 10 C -0.237 4.237 11 S 0.030 5.970 12 C -0.685 4.685 13 H 0.090 0.910 14 C -0.191 4.191 15 N -0.544 5.544 16 Si 0.817 3.183 17 H -0.186 1.186 18 H -0.197 1.197 19 H -0.197 1.197 20 C 0.062 3.938 21 C -0.212 4.212 22 C -0.199 4.199 23 O -0.299 6.299 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.170 0.830 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.419 13.141 -17.666 24.803 hybrid contribution 1.620 1.551 1.279 2.582 sum -9.800 14.692 -16.387 24.092 Atomic orbital electron populations 1.21843 0.92204 1.02606 1.03092 1.22427 0.95204 0.92017 0.84712 1.22201 1.01224 0.95105 1.03092 1.23325 0.95566 1.00382 0.97901 1.23042 0.97020 0.91698 0.92821 0.92112 1.60648 1.45786 1.18867 1.05783 1.21852 0.96705 0.95734 0.91210 1.21115 0.99750 0.97883 0.93457 1.23150 1.01646 0.99393 0.99506 1.84651 1.75018 1.12321 1.24999 1.23070 1.43177 0.95412 1.06842 0.90964 1.26082 0.96090 0.94887 1.02019 1.70165 1.43955 1.03039 1.37256 0.84959 0.77882 0.78675 0.76812 1.18632 1.19681 1.19669 1.22151 0.86073 0.92937 0.92680 1.22152 0.96694 1.01554 1.00815 1.21925 1.02780 0.93582 1.01654 1.88454 1.42294 1.64274 1.34875 0.89912 0.91754 0.92540 0.92748 0.91736 0.90375 0.90345 0.89770 0.82976 0.90970 0.94602 0.91683 0.91535 0.92009 0.91996 0.91966 0.90846 0.91529 0.92213 0.92561 0.92193 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.95 71.98 0.64 -1.46 16 2 C 0.10 1.66 1.21 -10.13 -0.01 1.64 16 3 C -0.16 -2.32 8.84 71.98 0.64 -1.68 16 4 C -0.13 -2.46 5.69 32.05 0.18 -2.28 16 5 C 0.06 1.22 2.30 46.18 0.11 1.32 16 6 H 0.06 1.14 7.31 -2.39 -0.02 1.12 16 7 N -0.68 -14.21 5.59 -485.09 -2.71 -16.92 16 8 C 0.08 1.82 5.55 86.30 0.48 2.30 16 9 C -0.08 -2.58 5.48 30.59 0.17 -2.41 16 10 C -0.09 -3.46 5.67 71.98 0.41 -3.05 16 11 S -0.20 -10.58 21.44 -56.49 -1.21 -11.79 16 12 C -0.54 -31.11 9.50 67.96 0.65 -30.46 16 13 H 0.07 4.03 7.80 -2.92 -0.02 4.01 16 14 C 0.01 0.80 5.49 84.86 0.47 1.27 16 15 N -0.91 -54.95 13.22 21.65 0.29 -54.67 16 16 Si 0.99 43.93 29.55 68.60 2.03 45.96 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 C 0.10 1.88 1.19 -10.32 -0.01 1.86 16 21 C -0.15 -2.47 8.75 71.98 0.63 -1.84 16 22 C -0.14 -2.60 8.07 71.98 0.58 -2.02 16 23 O -0.38 -7.98 10.04 -148.98 -1.50 -9.47 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.83 7.31 -2.38 -0.02 0.81 16 28 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.64 8.06 -2.39 -0.02 1.62 16 31 H 0.08 1.43 8.03 -2.38 -0.02 1.41 16 32 H 0.35 6.78 6.44 -89.70 -0.58 6.20 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.04 0.83 8.09 -2.39 -0.02 0.81 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 0.93 7.92 -2.39 -0.02 0.92 16 43 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.26 6.25 -2.39 -0.01 1.24 16 Total: -1.00 -65.90 367.35 2.17 -63.73 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.35 Total: 19.96 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 4.92 Total: -36.80 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -2.42 Total: -71.58 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -1.50 Total: -9.47 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -10.58 SS G_CDS: -1.21 Total: -11.79 kcal Total: -65.90 2.17 -63.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132587500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.460 kcal (2) G-P(sol) polarization free energy of solvation -65.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds