Wall clock time and date at job start Tue Mar 31 2020 03:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34887 * 117.00403 * 2 1 4 4 O 1.21624 * 119.99726 * 0.02562 * 3 2 1 5 5 C 1.46491 * 120.00543 * 180.02562 * 3 2 1 6 6 C 1.37991 * 126.26611 * 180.18847 * 5 3 2 7 7 C 1.39794 * 106.96807 * 180.25494 * 6 5 3 8 8 S 1.76202 * 126.07879 * 179.77731 * 7 6 5 9 9 O 1.42097 * 106.40246 * 23.49817 * 8 7 6 10 10 O 1.42105 * 106.40202 * 156.42009 * 8 7 6 11 11 N 1.65602 * 107.22054 * 269.95782 * 8 7 6 12 12 C 1.36936 * 119.99650 * 64.99886 * 11 8 7 13 13 H 1.08005 * 120.00414 * 359.97438 * 12 11 8 14 14 C 1.38810 * 119.99979 * 180.02562 * 12 11 8 15 15 N 1.31619 * 119.99846 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00175 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47004 * 59.99768 * 16 14 12 18 18 H 1.48501 * 109.47238 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47257 * 299.99595 * 16 14 12 20 20 C 1.35485 * 107.84326 * 359.74279 * 7 6 5 21 21 N 1.34957 * 108.98658 * 359.97438 * 20 7 6 22 22 C 1.46499 * 125.63725 * 180.02562 * 21 20 7 23 23 H 1.08997 * 109.47278 * 59.99934 * 1 2 3 24 24 H 1.09007 * 109.47204 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46902 * 299.99982 * 1 2 3 26 26 H 1.08002 * 126.51550 * 359.97438 * 6 5 3 27 27 H 0.96994 * 120.00481 * 245.00559 * 11 8 7 28 28 H 0.97006 * 119.99940 * 180.02562 * 15 14 12 29 29 H 1.08004 * 125.50845 * 179.97438 * 20 7 6 30 30 H 1.09002 * 109.47391 * 90.02143 * 22 21 20 31 31 H 1.09001 * 109.46813 * 330.02199 * 22 21 20 32 32 H 1.09004 * 109.47041 * 210.02326 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4020 2.2218 0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.2842 2.4323 0.0030 7 6 5.6260 2.0401 -0.0051 8 16 7.0215 3.1158 -0.0102 9 8 6.5791 4.3496 0.5384 10 8 8.1050 2.3700 0.5277 11 7 7.4020 3.4176 -1.5934 12 6 6.5232 4.1017 -2.3903 13 1 5.5818 4.4439 -1.9864 14 6 6.8419 4.3543 -3.7175 15 7 7.9889 3.9367 -4.2098 16 14 5.6434 5.2880 -4.8044 17 1 5.4019 6.6362 -4.2305 18 1 6.2158 5.4261 -6.1677 19 1 4.3602 4.5445 -4.8789 20 6 5.6626 0.6857 -0.0075 21 7 4.3988 0.2123 -0.0006 22 6 4.0171 -1.2021 -0.0001 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9110 3.4458 0.0064 27 1 8.2472 3.1099 -1.9563 28 1 8.2117 4.1136 -5.1372 29 1 6.5584 0.0824 -0.0138 30 1 3.9280 -1.5540 1.0277 31 1 4.7788 -1.7841 -0.5187 32 1 3.0603 -1.3204 -0.5089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152448582.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:00 Heat of formation + Delta-G solvation = -105.853877 kcal Electronic energy + Delta-G solvation = -20931.399289 eV Core-core repulsion = 17406.627968 eV Total energy + Delta-G solvation = -3524.771321 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.39568 -39.85351 -36.49864 -35.98413 -34.64650 -34.48989 -32.94442 -30.81918 -29.98292 -27.62649 -26.69842 -24.39872 -23.25071 -21.17366 -19.95974 -18.69708 -18.07734 -17.59655 -17.04010 -16.59039 -16.27298 -15.68131 -15.21396 -14.93411 -14.50582 -14.26879 -14.00481 -13.50197 -13.38800 -13.11779 -12.75814 -12.41030 -12.25382 -12.07947 -11.87170 -11.20699 -11.01434 -10.99361 -10.96987 -10.81114 -10.76665 -10.49805 -10.37085 -10.00439 -9.90435 -8.90804 -8.33351 -8.16305 -6.34191 -3.80232 1.28909 1.67052 2.40463 2.50652 2.84226 3.15236 3.27509 3.29362 3.34241 4.19479 4.59390 4.64872 4.73726 4.89449 4.91756 4.98959 4.99980 5.05466 5.22873 5.28354 5.37321 5.39824 5.77656 5.83307 6.19094 6.28743 6.68464 6.91434 7.15340 7.16420 7.61389 7.70972 8.78533 8.92884 9.35286 10.82508 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.006160 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.430273 B = 4544.303465 C = 5544.201655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.366 6.366 3 C 0.541 3.459 4 O -0.499 6.499 5 C -0.074 4.074 6 C 0.007 3.993 7 C -0.738 4.738 8 S 2.659 3.341 9 O -0.972 6.972 10 O -1.006 7.006 11 N -0.955 5.955 12 C -0.280 4.280 13 H 0.102 0.898 14 C 0.031 3.969 15 N -0.889 5.889 16 Si 0.918 3.082 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.144 3.856 21 N -0.418 5.418 22 C 0.063 3.937 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.163 0.837 27 H 0.410 0.590 28 H 0.271 0.729 29 H 0.186 0.814 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.112 -12.118 5.344 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.387 3.613 4 O -0.386 6.386 5 C -0.181 4.181 6 C -0.019 4.019 7 C -0.825 4.825 8 S 2.747 3.253 9 O -0.962 6.962 10 O -0.995 6.995 11 N -0.709 5.709 12 C -0.418 4.418 13 H 0.120 0.880 14 C -0.175 4.175 15 N -0.531 5.531 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.200 1.200 20 C 0.002 3.998 21 N -0.092 5.092 22 C -0.078 4.078 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.180 0.820 27 H 0.246 0.754 28 H 0.081 0.919 29 H 0.203 0.797 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.255 -11.884 6.111 16.845 hybrid contribution -1.043 -0.310 -1.218 1.633 sum -11.298 -12.195 4.892 17.329 Atomic orbital electron populations 1.23251 0.76094 1.03494 1.02817 1.86577 1.23643 1.32971 1.85190 1.19741 0.86835 0.81608 0.73094 1.90909 1.65372 1.35670 1.46693 1.19394 0.86341 0.88243 1.24162 1.21028 0.90076 0.97163 0.93643 1.32233 1.17841 1.08511 1.23927 1.04260 0.72696 0.73875 0.74470 1.93479 1.82845 1.41873 1.77974 1.93415 1.53402 1.73376 1.79296 1.51519 1.25368 1.63107 1.30877 1.19196 1.01224 1.28419 0.92916 0.88013 1.25143 0.96966 0.98460 0.96939 1.69682 1.21575 1.46050 1.15784 0.86117 0.80077 0.80260 0.79018 1.19591 1.20908 1.19956 1.21754 0.87105 0.93773 0.97209 1.44152 1.05933 1.06480 1.52657 1.22331 1.03592 0.77892 1.03984 0.91726 0.88167 0.91796 0.81961 0.75432 0.91860 0.79701 0.90305 0.89233 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.39 16 2 O -0.37 -4.47 7.99 -41.00 -0.33 -4.80 16 3 C 0.54 8.62 7.92 34.06 0.27 8.89 16 4 O -0.50 -9.11 16.68 -19.36 -0.32 -9.43 16 5 C -0.07 -1.26 6.88 -82.00 -0.56 -1.83 16 6 C 0.01 0.13 10.46 -39.09 -0.41 -0.28 16 7 C -0.74 -14.20 6.09 -39.98 -0.24 -14.45 16 8 S 2.66 58.35 5.84 -107.50 -0.63 57.72 16 9 O -0.97 -23.95 17.57 -57.17 -1.00 -24.95 16 10 O -1.01 -22.75 17.85 -57.17 -1.02 -23.77 16 11 N -0.96 -23.00 5.75 31.50 0.18 -22.82 16 12 C -0.28 -7.21 9.63 -15.06 -0.15 -7.36 16 13 H 0.10 2.53 7.82 -52.48 -0.41 2.12 16 14 C 0.03 0.80 5.50 -17.43 -0.10 0.70 16 15 N -0.89 -23.91 13.06 55.49 0.72 -23.19 16 16 Si 0.92 20.38 29.55 -169.99 -5.02 15.36 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 20 C 0.14 2.29 11.09 -17.16 -0.19 2.10 16 21 N -0.42 -6.04 3.15 -120.40 -0.38 -6.41 16 22 C 0.06 0.58 10.57 59.85 0.63 1.22 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.16 3.10 8.06 -52.49 -0.42 2.67 16 27 H 0.41 9.95 8.02 -34.47 -0.28 9.68 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.19 2.36 8.06 -52.48 -0.42 1.93 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.89 6.13 -51.93 -0.32 0.57 16 LS Contribution 304.57 15.07 4.59 4.59 Total: -1.00 -33.96 304.57 -5.99 -39.94 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.10 Total: 7.38 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 0.32 Total: -9.60 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.53 Total: -52.43 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: -2.68 Total: -62.96 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 58.35 SS G_CDS: -0.63 Total: 57.72 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.96 -5.99 -39.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152448582.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.910 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds