Wall clock time and date at job start Tue Mar 31 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48503 * 109.47292 * 270.00108 * 3 2 1 5 5 H 1.48499 * 109.46990 * 29.99828 * 3 2 1 6 6 H 1.48496 * 109.47395 * 149.99661 * 3 2 1 7 7 C 1.40052 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.46368 * 119.99965 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27115 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 H 1.09002 * 109.46905 * 34.99910 * 12 11 9 14 14 C 1.52995 * 109.47327 * 155.00306 * 12 11 9 15 15 C 1.53002 * 109.47042 * 294.99752 * 14 12 11 16 16 C 1.54259 * 110.03550 * 292.17035 * 15 14 12 17 17 C 1.54888 * 104.19878 * 217.10560 * 16 15 14 18 18 C 1.54894 * 102.74702 * 37.94010 * 17 16 15 19 19 C 1.53876 * 110.03221 * 174.99948 * 15 14 12 20 20 C 1.50701 * 109.47074 * 275.00559 * 12 11 9 21 21 C 1.38242 * 120.00000 * 319.71990 * 20 12 11 22 22 C 1.38235 * 120.00185 * 179.78840 * 21 20 12 23 23 C 1.38238 * 119.99649 * 0.44590 * 22 21 20 24 24 C 1.38234 * 120.00400 * 359.80779 * 23 22 21 25 25 C 1.38231 * 120.00164 * 139.99708 * 20 12 11 26 26 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 28 28 H 1.08994 * 109.47294 * 55.00438 * 14 12 11 29 29 H 1.09002 * 109.47282 * 175.00259 * 14 12 11 30 30 H 1.09004 * 110.01414 * 53.61416 * 15 14 12 31 31 H 1.09011 * 110.48433 * 335.78024 * 16 15 14 32 32 H 1.08994 * 110.49127 * 98.42619 * 16 15 14 33 33 H 1.09004 * 110.75593 * 279.62876 * 17 16 15 34 34 H 1.08995 * 110.92049 * 156.32613 * 17 16 15 35 35 H 1.09002 * 110.48906 * 203.38250 * 18 17 16 36 36 H 1.08999 * 110.48632 * 80.73622 * 18 17 16 37 37 H 1.08992 * 110.03333 * 238.57432 * 19 15 14 38 38 H 1.09004 * 110.02829 * 0.02562 * 19 15 14 39 39 H 1.08001 * 119.99630 * 0.02562 * 21 20 12 40 40 H 1.07995 * 120.00226 * 180.27406 * 22 21 20 41 41 H 1.07998 * 119.99720 * 179.83211 * 23 22 21 42 42 H 1.07995 * 120.00515 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00539 * 359.97438 * 25 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5382 1.4401 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 1 0.3059 -4.8131 -0.5776 14 6 2.0938 -6.0147 -0.5911 15 6 2.3551 -5.7054 -2.0665 16 6 1.0466 -5.8343 -2.8733 17 6 1.4921 -6.4466 -4.2244 18 6 2.5913 -7.4513 -3.7985 19 6 3.3373 -6.7335 -2.6548 20 6 0.8575 -5.2824 1.4298 21 6 1.7680 -5.0748 2.4491 22 6 1.4372 -5.4065 3.7497 23 6 0.1992 -5.9542 4.0297 24 6 -0.7094 -6.1666 3.0097 25 6 -0.3801 -5.8309 1.7097 26 1 -0.4850 0.8400 -0.0004 27 1 2.9189 -3.6477 0.0070 28 1 3.0420 -6.0579 -0.0554 29 1 1.5844 -6.9746 -0.5058 30 1 2.7611 -4.6992 -2.1705 31 1 0.3487 -6.4996 -2.3646 32 1 0.5961 -4.8541 -3.0288 33 1 1.9035 -5.6788 -4.8796 34 1 0.6639 -6.9631 -4.7096 35 1 3.2683 -7.6511 -4.6291 36 1 2.1430 -8.3776 -3.4392 37 1 4.2195 -6.2262 -3.0450 38 1 3.6275 -7.4530 -1.8891 39 1 2.7365 -4.6501 2.2298 40 1 2.1468 -5.2403 4.5466 41 1 -0.0583 -6.2158 5.0454 42 1 -1.6764 -6.5948 3.2284 43 1 -1.0900 -5.9968 0.9129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170599341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:44 Heat of formation + Delta-G solvation = -42.398288 kcal Electronic energy + Delta-G solvation = -22952.921139 eV Core-core repulsion = 19768.382702 eV Total energy + Delta-G solvation = -3184.538437 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -39.37986 -38.09003 -36.93434 -34.27818 -32.38302 -30.70253 -30.34047 -30.20519 -28.54461 -26.76575 -25.54503 -22.90224 -22.09866 -20.81909 -20.48971 -19.53026 -18.94574 -17.26308 -16.45375 -15.61865 -15.33885 -15.12230 -14.87018 -14.60147 -14.05715 -13.73489 -13.39693 -13.18096 -13.13953 -12.92602 -12.46052 -12.13560 -11.95803 -11.82179 -11.39669 -11.16275 -11.02149 -11.01042 -10.87641 -10.82515 -10.62783 -10.50830 -10.42604 -10.27163 -10.19601 -10.14533 -10.06857 -8.82882 -8.45226 -8.23682 -7.54984 -7.48446 -6.14918 -4.60309 1.84184 1.87299 3.15159 3.22196 3.25258 4.12034 4.24403 4.61939 4.71100 4.80238 4.86590 4.93850 5.21718 5.34406 5.36270 5.51084 5.54299 5.57974 5.60577 5.66633 5.78239 5.84063 5.88981 5.90736 5.97377 6.00205 6.03660 6.07367 6.16562 6.22921 6.34053 6.40341 6.43474 6.49553 6.50396 6.65571 6.75116 6.91183 6.93944 7.17913 7.46169 7.47537 7.96104 8.14432 8.36535 9.06177 9.58225 10.64280 10.84137 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.009916 B = 0.006429 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.152741 B = 4354.009121 C = 6387.757240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.558 3.442 10 O -0.576 6.576 11 N -0.755 5.755 12 C 0.190 3.810 13 H 0.086 0.914 14 C -0.109 4.109 15 C -0.090 4.090 16 C -0.119 4.119 17 C -0.125 4.125 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.071 4.071 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.110 4.110 26 H 0.267 0.733 27 H 0.378 0.622 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.912 -13.748 -1.097 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.362 3.638 10 O -0.458 6.458 11 N -0.410 5.410 12 C 0.083 3.917 13 H 0.104 0.896 14 C -0.147 4.147 15 C -0.108 4.108 16 C -0.157 4.157 17 C -0.163 4.163 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.073 4.073 21 C -0.118 4.118 22 C -0.144 4.144 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.129 4.129 26 H 0.078 0.922 27 H 0.210 0.790 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.829 -13.621 -1.109 14.192 hybrid contribution 0.868 0.955 0.177 1.303 sum 4.697 -12.666 -0.932 13.541 Atomic orbital electron populations 1.70017 1.06988 1.27097 1.35531 1.25674 0.94564 1.00149 0.92689 0.86433 0.80200 0.81706 0.78764 1.19803 1.20528 1.18981 1.20867 0.93465 0.89488 1.54442 0.91636 1.18166 0.87219 0.82351 0.76099 1.90604 1.14040 1.86667 1.54487 1.46199 1.08201 1.04379 1.82192 1.19489 0.96536 0.85065 0.90562 0.89637 1.21940 0.99691 0.98031 0.95057 1.21754 0.95338 0.99698 0.94031 1.22429 0.97128 1.01168 0.94933 1.22498 0.97973 0.98237 0.97595 1.22346 0.97591 0.98296 0.97875 1.22229 0.98177 0.97886 0.97528 1.20564 0.93675 0.95888 0.97172 1.20926 0.99735 0.98797 0.92378 1.21055 0.96866 0.99951 0.96542 1.20985 0.94488 1.01199 0.98568 1.21019 0.99014 1.01142 0.93154 1.20991 0.96194 0.99147 0.96524 0.92227 0.79020 0.91959 0.91518 0.90109 0.91811 0.91257 0.91726 0.92081 0.92296 0.92016 0.92137 0.92032 0.86433 0.86793 0.86935 0.86773 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.12 11.83 55.55 0.66 -22.46 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.90 20.28 29.56 -169.99 -5.02 15.25 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.55 -15.27 9.54 -35.63 -0.34 -15.61 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 9 C 0.56 15.47 7.70 -12.99 -0.10 15.37 16 10 O -0.58 -18.34 14.68 5.20 0.08 -18.26 16 11 N -0.76 -16.14 3.69 -56.35 -0.21 -16.35 16 12 C 0.19 3.53 2.09 -69.08 -0.14 3.39 16 13 H 0.09 1.82 6.67 -51.93 -0.35 1.47 16 14 C -0.11 -1.56 3.85 -26.73 -0.10 -1.66 16 15 C -0.09 -1.24 2.87 -89.50 -0.26 -1.50 16 16 C -0.12 -1.67 5.45 -25.08 -0.14 -1.81 16 17 C -0.13 -1.48 6.91 -24.74 -0.17 -1.65 16 18 C -0.12 -1.31 6.83 -25.07 -0.17 -1.48 16 19 C -0.12 -1.38 6.46 -25.61 -0.17 -1.54 16 20 C -0.07 -1.32 4.91 -104.62 -0.51 -1.84 16 21 C -0.10 -1.77 9.32 -39.58 -0.37 -2.14 16 22 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 23 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 24 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 25 C -0.11 -1.93 9.67 -39.58 -0.38 -2.32 16 26 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 27 H 0.38 7.19 8.58 -40.82 -0.35 6.84 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 30 H 0.08 1.28 7.62 -51.93 -0.40 0.88 16 31 H 0.06 0.87 7.76 -51.92 -0.40 0.46 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 39 H 0.12 1.99 7.73 -52.49 -0.41 1.58 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.12 1.92 8.04 -52.49 -0.42 1.49 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -33.42 351.71 -10.25 -43.67 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.91 Total: 10.44 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -4.14 Total: -17.59 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.45 Total: -38.81 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.08 Total: -18.26 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.42 -10.25 -43.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170599341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.273 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds