Wall clock time and date at job start Tue Mar 31 2020 02:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48503 * 109.47292 * 270.00108 * 3 2 1 5 5 H 1.48499 * 109.46990 * 29.99828 * 3 2 1 6 6 H 1.48496 * 109.47395 * 149.99661 * 3 2 1 7 7 C 1.40052 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.46368 * 119.99965 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27115 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 H 1.09002 * 109.46905 * 34.99910 * 12 11 9 14 14 C 1.52995 * 109.47327 * 155.00306 * 12 11 9 15 15 C 1.53002 * 109.47042 * 294.99752 * 14 12 11 16 16 C 1.54259 * 110.03550 * 292.17035 * 15 14 12 17 17 C 1.54888 * 104.19878 * 217.10560 * 16 15 14 18 18 C 1.54894 * 102.74702 * 37.94010 * 17 16 15 19 19 C 1.53876 * 110.03221 * 174.99948 * 15 14 12 20 20 C 1.50701 * 109.47074 * 275.00559 * 12 11 9 21 21 C 1.38242 * 120.00000 * 319.71990 * 20 12 11 22 22 C 1.38235 * 120.00185 * 179.78840 * 21 20 12 23 23 C 1.38238 * 119.99649 * 0.44590 * 22 21 20 24 24 C 1.38234 * 120.00400 * 359.80779 * 23 22 21 25 25 C 1.38231 * 120.00164 * 139.99708 * 20 12 11 26 26 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 28 28 H 1.08994 * 109.47294 * 55.00438 * 14 12 11 29 29 H 1.09002 * 109.47282 * 175.00259 * 14 12 11 30 30 H 1.09004 * 110.01414 * 53.61416 * 15 14 12 31 31 H 1.09011 * 110.48433 * 335.78024 * 16 15 14 32 32 H 1.08994 * 110.49127 * 98.42619 * 16 15 14 33 33 H 1.09004 * 110.75593 * 279.62876 * 17 16 15 34 34 H 1.08995 * 110.92049 * 156.32613 * 17 16 15 35 35 H 1.09002 * 110.48906 * 203.38250 * 18 17 16 36 36 H 1.08999 * 110.48632 * 80.73622 * 18 17 16 37 37 H 1.08992 * 110.03333 * 238.57432 * 19 15 14 38 38 H 1.09004 * 110.02829 * 0.02562 * 19 15 14 39 39 H 1.08001 * 119.99630 * 0.02562 * 21 20 12 40 40 H 1.07995 * 120.00226 * 180.27406 * 22 21 20 41 41 H 1.07998 * 119.99720 * 179.83211 * 23 22 21 42 42 H 1.07995 * 120.00515 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00539 * 359.97438 * 25 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5382 1.4401 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 1 0.3059 -4.8131 -0.5776 14 6 2.0938 -6.0147 -0.5911 15 6 2.3551 -5.7054 -2.0665 16 6 1.0466 -5.8343 -2.8733 17 6 1.4921 -6.4466 -4.2244 18 6 2.5913 -7.4513 -3.7985 19 6 3.3373 -6.7335 -2.6548 20 6 0.8575 -5.2824 1.4298 21 6 1.7680 -5.0748 2.4491 22 6 1.4372 -5.4065 3.7497 23 6 0.1992 -5.9542 4.0297 24 6 -0.7094 -6.1666 3.0097 25 6 -0.3801 -5.8309 1.7097 26 1 -0.4850 0.8400 -0.0004 27 1 2.9189 -3.6477 0.0070 28 1 3.0420 -6.0579 -0.0554 29 1 1.5844 -6.9746 -0.5058 30 1 2.7611 -4.6992 -2.1705 31 1 0.3487 -6.4996 -2.3646 32 1 0.5961 -4.8541 -3.0288 33 1 1.9035 -5.6788 -4.8796 34 1 0.6639 -6.9631 -4.7096 35 1 3.2683 -7.6511 -4.6291 36 1 2.1430 -8.3776 -3.4392 37 1 4.2195 -6.2262 -3.0450 38 1 3.6275 -7.4530 -1.8891 39 1 2.7365 -4.6501 2.2298 40 1 2.1468 -5.2403 4.5466 41 1 -0.0583 -6.2158 5.0454 42 1 -1.6764 -6.5948 3.2284 43 1 -1.0900 -5.9968 0.9129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170599341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:40 Heat of formation + Delta-G solvation = -61.296178 kcal Electronic energy + Delta-G solvation = -22953.740613 eV Core-core repulsion = 19768.382702 eV Total energy + Delta-G solvation = -3185.357911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 4.41 seconds Orbital eigenvalues (eV) -40.78740 -39.25388 -38.77638 -35.91422 -34.52220 -32.33704 -31.66360 -31.43915 -29.56651 -28.57265 -27.11487 -24.18440 -23.42705 -22.42573 -21.66339 -20.90168 -20.29929 -19.22466 -17.75793 -17.47285 -16.71303 -16.48447 -16.32716 -15.80690 -15.73350 -15.16261 -14.75570 -14.59158 -14.36433 -14.19119 -14.14557 -13.76046 -13.52624 -13.19661 -12.83019 -12.80266 -12.70842 -12.55938 -12.17464 -12.01021 -11.92802 -11.90621 -11.82833 -11.53415 -11.47309 -11.40589 -11.19316 -10.91731 -9.83771 -9.75588 -9.53644 -9.36243 -8.26061 -6.81893 0.53326 0.56868 1.38344 1.39985 1.54520 2.24356 2.51708 2.90809 3.23068 3.59167 3.71036 3.78079 3.83037 4.06559 4.09378 4.18260 4.31691 4.35546 4.40142 4.51176 4.59870 4.68254 4.70871 4.75909 4.80296 4.85263 4.93538 4.97620 5.10913 5.14099 5.16616 5.19809 5.24858 5.30378 5.33356 5.40894 5.52426 5.59612 5.63606 5.64920 5.77052 5.93939 6.19603 6.27892 6.37937 6.89957 7.62070 8.55425 8.73239 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.009916 B = 0.006429 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.152741 B = 4354.009121 C = 6387.757240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.030 3.970 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.546 3.454 10 O -0.627 6.627 11 N -0.739 5.739 12 C 0.194 3.806 13 H 0.048 0.952 14 C -0.095 4.095 15 C -0.089 4.089 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.096 4.096 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.133 4.133 24 C -0.127 4.127 25 C -0.134 4.134 26 H 0.272 0.728 27 H 0.391 0.609 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.965 -14.778 -0.205 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.172 1.172 7 C -0.611 4.611 8 H 0.102 0.898 9 C 0.350 3.650 10 O -0.514 6.514 11 N -0.392 5.392 12 C 0.088 3.912 13 H 0.066 0.934 14 C -0.133 4.133 15 C -0.108 4.108 16 C -0.160 4.160 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.098 4.098 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.153 4.153 26 H 0.082 0.918 27 H 0.225 0.775 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.932 -14.706 -0.220 15.859 hybrid contribution 0.171 1.205 -0.060 1.218 sum 6.102 -13.501 -0.280 14.819 Atomic orbital electron populations 1.70197 1.09447 1.28619 1.36966 1.26901 0.95442 1.04768 0.91341 0.85102 0.78853 0.75503 0.79348 1.18683 1.19979 1.17250 1.21412 0.94543 0.90309 1.54788 0.89802 1.18459 0.86759 0.84168 0.75629 1.90558 1.16218 1.87826 1.56802 1.45789 1.08700 1.04160 1.80584 1.19528 0.95631 0.84864 0.91138 0.93356 1.21859 0.99523 0.96814 0.95092 1.21721 0.95789 0.99370 0.93926 1.22407 0.97314 0.99310 0.96946 1.22492 0.99008 0.98562 0.95981 1.22336 0.97122 0.97952 0.98043 1.22189 0.97514 0.97351 0.98167 1.20598 0.94720 0.97416 0.97022 1.21069 0.99786 0.99687 0.93218 1.21432 0.97865 0.99038 0.96371 1.21430 0.93775 0.99811 1.00044 1.21382 1.00394 1.00369 0.92355 1.21177 0.96031 1.00259 0.97814 0.91841 0.77541 0.90399 0.90001 0.92710 0.91660 0.95153 0.92139 0.90918 0.90520 0.90906 0.91554 0.90546 0.86369 0.84069 0.83442 0.84077 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.41 11.83 21.84 0.26 -51.15 16 2 C 0.03 1.72 5.50 85.31 0.47 2.19 16 3 Si 0.99 41.83 29.56 68.60 2.03 43.85 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.57 -32.86 9.54 24.83 0.24 -32.63 16 8 H 0.08 4.32 7.85 -2.91 -0.02 4.30 16 9 C 0.55 31.75 7.70 86.36 0.67 32.42 16 10 O -0.63 -42.45 14.68 -4.33 -0.06 -42.51 16 11 N -0.74 -32.96 3.69 -450.41 -1.66 -34.63 16 12 C 0.19 7.58 2.09 44.24 0.09 7.68 16 13 H 0.05 2.24 6.67 -2.39 -0.02 2.22 16 14 C -0.10 -2.72 3.85 30.59 0.12 -2.61 16 15 C -0.09 -2.51 2.87 -10.07 -0.03 -2.53 16 16 C -0.12 -3.61 5.45 31.67 0.17 -3.44 16 17 C -0.12 -2.83 6.91 31.89 0.22 -2.61 16 18 C -0.12 -2.21 6.83 31.67 0.22 -1.99 16 19 C -0.11 -2.41 6.46 31.32 0.20 -2.20 16 20 C -0.10 -3.66 4.91 -19.86 -0.10 -3.76 16 21 C -0.12 -4.19 9.32 22.27 0.21 -3.98 16 22 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 23 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 24 C -0.13 -3.84 10.05 22.27 0.22 -3.62 16 25 C -0.13 -4.83 9.67 22.27 0.22 -4.62 16 26 H 0.27 15.46 8.29 -92.71 -0.77 14.70 16 27 H 0.39 15.24 8.58 -92.71 -0.80 14.44 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.08 2.13 8.00 -2.39 -0.02 2.11 16 30 H 0.05 1.81 7.62 -2.39 -0.02 1.79 16 31 H 0.06 1.86 7.76 -2.38 -0.02 1.85 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.40 7.67 -2.38 -0.02 1.39 16 39 H 0.12 3.98 7.73 -2.91 -0.02 3.96 16 40 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 41 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 42 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.11 3.97 8.04 -2.91 -0.02 3.94 16 Total: -1.00 -76.66 351.71 4.11 -72.55 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: 0.19 Total: 40.70 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 3.36 Total: -28.82 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -1.41 Total: -85.77 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.06 Total: -42.51 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -76.66 4.11 -72.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170599341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.257 kcal (2) G-P(sol) polarization free energy of solvation -76.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds