Wall clock time and date at job start Tue Mar 31 2020 04:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47538 * 2 1 4 4 C 1.50697 * 109.46999 * 239.99597 * 2 1 3 5 5 H 1.08006 * 120.00008 * 240.00112 * 4 2 1 6 6 C 1.37879 * 120.00134 * 60.00416 * 4 2 1 7 7 N 1.31512 * 119.99699 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00216 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46990 * 59.99676 * 8 6 4 10 10 H 1.48497 * 109.47085 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47014 * 299.99885 * 8 6 4 12 12 N 1.46503 * 109.46925 * 120.00116 * 2 1 3 13 13 C 1.34780 * 119.99979 * 274.99869 * 12 2 1 14 14 O 1.21528 * 119.99667 * 359.97438 * 13 12 2 15 15 C 1.48010 * 120.00287 * 180.02562 * 13 12 2 16 16 C 1.39465 * 119.92342 * 359.97438 * 15 13 12 17 17 C 1.38450 * 120.30820 * 180.02562 * 16 15 13 18 18 C 1.38585 * 119.90155 * 359.97438 * 17 16 15 19 19 C 1.40989 * 120.06086 * 0.02562 * 18 17 16 20 20 C 1.38429 * 119.95934 * 359.97438 * 19 18 17 21 21 C 1.47831 * 105.89045 * 179.97438 * 19 18 17 22 22 O 1.21453 * 125.68871 * 179.97438 * 21 19 18 23 23 N 1.34504 * 108.62298 * 0.26204 * 21 19 18 24 24 C 1.34520 * 111.10426 * 359.55364 * 23 21 19 25 25 O 1.21420 * 125.72230 * 180.18565 * 24 23 21 26 26 H 1.08999 * 109.46965 * 300.00358 * 1 2 3 27 27 H 1.09000 * 109.47074 * 60.00136 * 1 2 3 28 28 H 1.09003 * 109.47091 * 180.02562 * 1 2 3 29 29 H 0.97002 * 120.00044 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00326 * 94.99704 * 12 2 1 31 31 H 1.08000 * 119.84730 * 359.97438 * 16 15 13 32 32 H 1.08000 * 120.04599 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.19395 * 179.97438 * 20 19 18 34 34 H 0.96996 * 124.45201 * 179.73532 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8269 -0.4202 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8585 1.1610 2.4116 15 6 2.6409 -0.7159 3.5656 16 6 2.9721 -2.0691 3.5012 17 6 3.4343 -2.7296 4.6268 18 6 3.5694 -2.0438 5.8235 19 6 3.2362 -0.6757 5.8950 20 6 2.7743 -0.0169 4.7686 21 6 3.4946 -0.2687 7.2925 22 8 3.3274 0.8443 7.7488 23 7 3.9517 -1.3351 7.9729 24 6 4.0195 -2.4214 7.1824 25 8 4.3921 -3.5252 7.5247 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7088 1.1612 -3.4844 30 1 2.2490 -1.6318 1.1527 31 1 2.8667 -2.6045 2.5692 32 1 3.6891 -3.7777 4.5723 33 1 2.5176 1.0309 4.8192 34 1 4.1976 -1.3232 8.9111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171473933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:53 Heat of formation + Delta-G solvation = -81.673429 kcal Electronic energy + Delta-G solvation = -21468.021643 eV Core-core repulsion = 17944.688008 eV Total energy + Delta-G solvation = -3523.333635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.38034 -41.03098 -39.88169 -39.01069 -36.88683 -36.75321 -34.45119 -32.70737 -32.31052 -30.62456 -27.32798 -26.59130 -25.78816 -23.98296 -22.85581 -21.60244 -21.32994 -19.60662 -19.14043 -18.45095 -17.81695 -17.59519 -17.26301 -16.81457 -16.47295 -16.10807 -15.97373 -15.60197 -15.27716 -15.13918 -14.94992 -14.44096 -14.16212 -13.87665 -13.59549 -13.03469 -12.96591 -12.83964 -12.71218 -12.24231 -12.14347 -11.83304 -11.68498 -11.61941 -11.10807 -10.98110 -10.57563 -10.46972 -10.39105 -9.80627 -8.15253 -6.32908 -1.29170 -0.29008 0.60387 1.42544 1.49534 1.50902 1.58560 1.73265 1.85892 2.16806 2.43418 2.60250 2.61430 3.06686 3.16183 3.41975 3.66284 3.86302 4.00740 4.12046 4.62309 4.69503 4.75327 4.80599 4.93350 4.94203 5.03902 5.10533 5.20458 5.37579 5.43219 5.58176 5.69155 5.89593 5.94696 6.10448 6.60044 6.73466 6.84850 7.30502 7.45680 8.90893 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.030913 B = 0.003372 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.537286 B = 8301.014259 C = 8963.920684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.002 0.998 4 C -0.547 4.547 5 H 0.080 0.920 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.262 1.262 10 H -0.291 1.291 11 H -0.270 1.270 12 N -0.690 5.690 13 C 0.538 3.462 14 O -0.589 6.589 15 C -0.108 4.108 16 C -0.043 4.043 17 C -0.029 4.029 18 C -0.124 4.124 19 C -0.159 4.159 20 C 0.002 3.998 21 C 0.588 3.412 22 O -0.490 6.490 23 N -0.664 5.664 24 C 0.591 3.409 25 O -0.478 6.478 26 H 0.013 0.987 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.265 0.735 30 H 0.409 0.591 31 H 0.176 0.824 32 H 0.186 0.814 33 H 0.137 0.863 34 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.889 -11.096 15.908 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.020 0.980 4 C -0.585 4.585 5 H 0.098 0.902 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.186 1.186 10 H -0.217 1.217 11 H -0.195 1.195 12 N -0.339 5.339 13 C 0.325 3.675 14 O -0.471 6.471 15 C -0.112 4.112 16 C -0.062 4.062 17 C -0.048 4.048 18 C -0.128 4.128 19 C -0.163 4.163 20 C -0.018 4.018 21 C 0.377 3.623 22 O -0.362 6.362 23 N -0.331 5.331 24 C 0.380 3.620 25 O -0.350 6.350 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.246 0.754 31 H 0.193 0.807 32 H 0.204 0.796 33 H 0.155 0.845 34 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 5.678 -10.159 16.098 19.865 hybrid contribution 0.177 0.102 -0.447 0.491 sum 5.855 -10.057 15.651 19.504 Atomic orbital electron populations 1.21925 0.98095 0.99797 0.99700 1.18425 0.91259 0.92137 0.81547 0.98005 1.21523 1.32721 1.13773 0.90482 0.90188 1.25788 0.94839 0.95531 1.02360 1.70046 1.36951 1.23972 1.24686 0.85402 0.78663 0.78781 0.77527 1.18631 1.21672 1.19523 1.46187 1.64077 1.14406 1.09215 1.18698 0.78269 0.86414 0.84110 1.90747 1.52973 1.17735 1.85662 1.20123 1.02556 0.95615 0.92886 1.21995 0.92098 0.91620 1.00481 1.21068 0.93619 1.02073 0.87996 1.20777 1.02515 0.94223 0.95262 1.20238 1.06238 0.95722 0.94084 1.20669 0.91440 1.00603 0.89095 1.18231 0.74560 0.83284 0.86233 1.90866 1.48544 1.21484 1.75339 1.44234 1.61860 1.10833 1.16167 1.18212 0.75310 0.83012 0.85491 1.90859 1.42847 1.21809 1.79449 0.96839 0.91475 0.93644 0.92588 0.75392 0.80681 0.79628 0.84510 0.71182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.55 9.26 71.98 0.67 -5.88 16 2 C 0.27 13.10 2.56 44.24 0.11 13.22 16 3 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 4 C -0.55 -27.00 8.73 25.60 0.22 -26.77 16 5 H 0.08 3.57 7.74 -2.91 -0.02 3.54 16 6 C 0.02 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -50.96 11.32 21.45 0.24 -50.71 16 8 Si 0.97 39.88 29.54 68.60 2.03 41.90 16 9 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 10 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 12 N -0.69 -25.57 5.02 -448.83 -2.25 -27.82 16 13 C 0.54 19.82 7.74 86.83 0.67 20.50 16 14 O -0.59 -27.55 16.00 -3.80 -0.06 -27.61 16 15 C -0.11 -2.79 5.88 -20.02 -0.12 -2.91 16 16 C -0.04 -0.71 9.54 22.62 0.22 -0.50 16 17 C -0.03 -0.38 10.08 22.40 0.23 -0.16 16 18 C -0.12 -2.09 6.41 -19.92 -0.13 -2.22 16 19 C -0.16 -3.36 6.39 -20.02 -0.13 -3.49 16 20 C 0.00 0.04 9.63 22.69 0.22 0.26 16 21 C 0.59 12.22 8.45 86.83 0.73 12.96 16 22 O -0.49 -13.25 18.04 -3.57 -0.06 -13.31 16 23 N -0.66 -9.84 5.76 -432.57 -2.49 -12.33 16 24 C 0.59 9.93 8.47 86.89 0.74 10.66 16 25 O -0.48 -9.85 18.04 -3.47 -0.06 -9.91 16 26 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.41 11.61 6.55 -92.71 -0.61 11.00 16 31 H 0.18 1.99 6.36 -2.91 -0.02 1.97 16 32 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 33 H 0.14 3.95 7.65 -2.91 -0.02 3.93 16 34 H 0.44 4.18 8.96 -92.71 -0.83 3.35 16 Total: -1.00 -70.32 307.02 0.97 -69.35 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -0.25 Total: 13.56 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 3.88 Total: 16.89 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -4.50 Total: -90.86 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -0.19 Total: -50.84 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.90 kcal Total: -70.32 0.97 -69.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171473933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.321 kcal (2) G-P(sol) polarization free energy of solvation -70.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds