Wall clock time and date at job start Tue Mar 31 2020 02:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 117.00058 * 2 1 4 4 O 1.20821 * 120.00431 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99714 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46793 * 180.02562 * 5 3 2 7 7 C 1.36934 * 120.00074 * 269.99211 * 6 5 3 8 8 H 1.07992 * 120.00381 * 191.21924 * 7 6 5 9 9 C 1.38814 * 119.99501 * 11.22421 * 7 6 5 10 10 N 1.31618 * 120.00489 * 25.46641 * 9 7 6 11 11 Si 1.86809 * 119.99748 * 205.46817 * 9 7 6 12 12 H 1.48495 * 109.46928 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46906 * 119.99972 * 11 9 7 14 14 H 1.48500 * 109.47066 * 240.00026 * 11 9 7 15 15 C 1.46495 * 120.00177 * 90.00001 * 6 5 3 16 16 C 1.53000 * 109.47579 * 84.45365 * 15 6 5 17 17 O 1.42894 * 109.46989 * 64.99865 * 16 15 6 18 18 C 1.42904 * 113.99938 * 180.02562 * 17 16 15 19 19 H 1.08995 * 109.47892 * 310.00192 * 18 17 16 20 20 C 1.53094 * 109.48000 * 189.97906 * 18 17 16 21 21 C 1.53171 * 109.16448 * 182.40942 * 20 18 17 22 22 C 1.53188 * 109.03695 * 56.97904 * 21 20 18 23 23 C 1.53094 * 109.16040 * 303.02306 * 22 21 20 24 24 O 1.42900 * 109.47839 * 70.02737 * 18 17 16 25 25 H 1.09000 * 109.46909 * 299.99964 * 1 2 3 26 26 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47001 * 59.99838 * 1 2 3 28 28 H 1.09002 * 109.46648 * 299.99290 * 5 3 2 29 29 H 1.08998 * 109.47562 * 59.99723 * 5 3 2 30 30 H 0.96997 * 120.00109 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47775 * 204.45937 * 15 6 5 32 32 H 1.09012 * 109.47198 * 324.45625 * 15 6 5 33 33 H 1.08996 * 109.47374 * 185.00247 * 16 15 6 34 34 H 1.09009 * 109.46829 * 305.00119 * 16 15 6 35 35 H 1.09003 * 109.51925 * 302.31558 * 20 18 17 36 36 H 1.08998 * 109.52525 * 62.50287 * 20 18 17 37 37 H 1.08997 * 109.54679 * 176.84229 * 21 20 18 38 38 H 1.09004 * 109.54589 * 297.11381 * 21 20 18 39 39 H 1.08996 * 109.51802 * 62.92909 * 22 21 20 40 40 H 1.08999 * 109.52098 * 183.05473 * 22 21 20 41 41 H 1.09005 * 109.47552 * 177.59351 * 23 22 21 42 42 H 1.09005 * 109.47943 * 297.60855 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.1756 3.3369 -1.1854 8 1 4.6519 4.3061 -1.1939 9 6 3.7597 2.7574 -2.3762 10 7 2.7788 1.8798 -2.3738 11 14 4.5922 3.2232 -3.9824 12 1 5.6578 4.2225 -3.7159 13 1 5.1925 2.0124 -4.5980 14 1 3.5886 3.8044 -4.9098 15 6 4.1900 3.3813 1.2692 16 6 5.6051 3.1027 1.7799 17 8 6.5573 3.6662 0.8757 18 6 7.9178 3.4608 1.2618 19 1 8.0485 3.7553 2.3031 20 6 8.8339 4.3063 0.3732 21 6 10.2928 4.0351 0.7530 22 6 10.5739 2.5353 0.6175 23 6 9.5905 1.7583 1.4967 24 8 8.2524 2.0797 1.1116 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 3.9564 0.7805 0.8892 29 1 3.9558 0.7808 -0.8908 30 1 2.4879 1.4752 -3.2060 31 1 4.0632 4.4531 1.1170 32 1 3.4636 3.0299 2.0021 33 1 5.7305 3.5508 2.7655 34 1 5.7615 2.0260 1.8477 35 1 8.6741 4.0406 -0.6718 36 1 8.6098 5.3628 0.5197 37 1 10.9525 4.5912 0.0870 38 1 10.4655 4.3468 1.7832 39 1 10.4494 2.2340 -0.4225 40 1 11.5945 2.3256 0.9378 41 1 9.7580 0.6885 1.3714 42 1 9.7435 2.0303 2.5411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181733055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:22 Heat of formation + Delta-G solvation = -153.057297 kcal Electronic energy + Delta-G solvation = -24307.757292 eV Core-core repulsion = 20675.278307 eV Total energy + Delta-G solvation = -3632.478986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -39.40898 -38.81631 -36.90393 -35.54993 -34.34557 -33.61501 -31.62179 -30.27050 -28.68281 -27.40098 -25.85452 -24.68805 -23.35516 -22.98852 -20.96066 -20.21359 -19.48606 -17.07837 -16.83340 -16.40581 -16.14134 -15.63267 -15.30649 -14.97866 -14.73041 -14.63391 -14.22733 -13.93406 -13.53702 -13.22825 -13.00080 -12.67745 -12.49015 -12.33880 -12.02246 -11.64892 -11.44693 -11.15364 -11.10354 -11.01581 -10.82289 -10.79105 -10.51349 -10.40002 -10.36270 -9.97862 -9.78881 -9.49569 -9.33602 -9.23937 -8.97495 -8.38040 -6.95230 -5.77493 -3.02344 3.46674 3.54375 3.58995 3.67058 3.98145 4.16301 4.26376 4.62071 4.75076 4.80197 4.92023 5.09819 5.12260 5.33003 5.34688 5.48285 5.55727 5.65156 5.75575 5.85506 5.87680 5.92092 5.93381 5.96128 6.01556 6.07029 6.13237 6.19546 6.34309 6.38801 6.41105 6.71590 6.89088 7.15607 7.33954 7.76718 7.84753 7.94561 8.30398 9.18434 9.52125 9.86669 10.27524 11.34902 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.005206 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.468202 B = 5377.214460 C = 6278.267148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.385 6.385 3 C 0.467 3.533 4 O -0.506 6.506 5 C 0.192 3.808 6 N -0.560 5.560 7 C -0.227 4.227 8 H 0.082 0.918 9 C -0.006 4.006 10 N -0.907 5.907 11 Si 0.904 3.096 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.296 1.296 15 C 0.148 3.852 16 C 0.044 3.956 17 O -0.336 6.336 18 C 0.254 3.746 19 H 0.041 0.959 20 C -0.142 4.142 21 C -0.118 4.118 22 C -0.160 4.160 23 C 0.072 3.928 24 O -0.398 6.398 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.254 0.746 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.320 -1.043 9.616 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.302 6.302 3 C 0.307 3.693 4 O -0.391 6.391 5 C 0.062 3.938 6 N -0.279 5.279 7 C -0.356 4.356 8 H 0.100 0.900 9 C -0.203 4.203 10 N -0.554 5.554 11 Si 0.735 3.265 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.223 1.223 15 C 0.020 3.980 16 C -0.035 4.035 17 O -0.254 6.254 18 C 0.157 3.843 19 H 0.058 0.942 20 C -0.179 4.179 21 C -0.156 4.156 22 C -0.198 4.198 23 C -0.005 4.005 24 O -0.319 6.319 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.126 0.874 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.834 -0.788 9.231 14.255 hybrid contribution 0.219 0.286 -0.744 0.826 sum 11.053 -0.501 8.487 13.945 Atomic orbital electron populations 1.22822 0.80112 1.01090 1.01156 1.86547 1.20776 1.37007 1.85899 1.25549 0.93454 0.80145 0.70195 1.90446 1.66609 1.36448 1.45610 1.20301 0.85465 0.86809 1.01239 1.43943 1.74957 1.07189 1.01779 1.19300 1.30617 1.02976 0.82690 0.89982 1.24699 0.97381 1.00249 0.97934 1.69810 1.25647 1.33832 1.26097 0.86164 0.79218 0.77572 0.83570 1.20276 1.21710 1.22328 1.20853 0.90730 0.97740 0.88638 1.23428 0.91667 0.97667 0.90695 1.88238 1.12036 1.74533 1.50634 1.22863 0.84475 0.81613 0.95316 0.94191 1.21998 0.93470 1.00442 1.02033 1.21577 0.96176 0.96203 1.01644 1.22245 0.99556 0.95933 1.02026 1.22428 0.81595 0.99885 0.96609 1.87926 1.29234 1.27458 1.87276 0.93808 0.90331 0.92892 0.93157 0.87417 0.93577 0.91924 0.92813 0.94886 0.93103 0.89776 0.90369 0.91082 0.91982 0.90665 0.91000 0.88922 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.56 101.05 1.07 1.87 16 2 O -0.38 -8.74 10.57 -39.24 -0.41 -9.15 16 3 C 0.47 11.88 5.95 36.01 0.21 12.09 16 4 O -0.51 -14.43 15.70 -18.75 -0.29 -14.73 16 5 C 0.19 4.68 5.56 -5.19 -0.03 4.65 16 6 N -0.56 -14.14 1.97 -174.61 -0.34 -14.48 16 7 C -0.23 -6.34 9.43 -15.06 -0.14 -6.48 16 8 H 0.08 2.31 7.95 -52.49 -0.42 1.89 16 9 C -0.01 -0.18 4.84 -17.43 -0.08 -0.27 16 10 N -0.91 -26.74 8.90 55.49 0.49 -26.24 16 11 Si 0.90 22.71 29.62 -169.99 -5.04 17.68 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 15 C 0.15 3.09 6.07 -4.04 -0.02 3.07 16 16 C 0.04 0.81 6.15 37.16 0.23 1.03 16 17 O -0.34 -6.61 9.99 -59.04 -0.59 -7.20 16 18 C 0.25 4.01 3.16 37.21 0.12 4.13 16 19 H 0.04 0.56 8.09 -51.93 -0.42 0.14 16 20 C -0.14 -1.94 5.79 -26.59 -0.15 -2.09 16 21 C -0.12 -1.22 6.03 -26.55 -0.16 -1.38 16 22 C -0.16 -1.62 6.14 -26.59 -0.16 -1.79 16 23 C 0.07 0.83 6.84 37.21 0.25 1.08 16 24 O -0.40 -6.55 10.25 -59.04 -0.60 -7.15 16 25 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 1.06 8.13 -51.93 -0.42 0.64 16 28 H 0.05 1.06 8.05 -51.93 -0.42 0.64 16 29 H 0.11 2.86 6.52 -51.93 -0.34 2.52 16 30 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.06 1.34 8.00 -51.93 -0.42 0.92 16 32 H 0.05 1.05 8.11 -51.92 -0.42 0.63 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.95 7.86 -51.92 -0.41 0.54 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -34.11 345.41 -7.51 -41.62 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.05 Total: -1.46 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 1.12 Total: 15.92 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.15 Total: -40.72 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.90 Total: -38.23 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.04 Total: 17.68 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.11 -7.51 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181733055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.439 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds