Wall clock time and date at job start Tue Mar 31 2020 02:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 117.00058 * 2 1 4 4 O 1.20821 * 120.00431 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99714 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46793 * 180.02562 * 5 3 2 7 7 C 1.36934 * 120.00074 * 269.99211 * 6 5 3 8 8 H 1.07992 * 120.00381 * 191.21924 * 7 6 5 9 9 C 1.38814 * 119.99501 * 11.22421 * 7 6 5 10 10 N 1.31618 * 120.00489 * 25.46641 * 9 7 6 11 11 Si 1.86809 * 119.99748 * 205.46817 * 9 7 6 12 12 H 1.48495 * 109.46928 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46906 * 119.99972 * 11 9 7 14 14 H 1.48500 * 109.47066 * 240.00026 * 11 9 7 15 15 C 1.46495 * 120.00177 * 90.00001 * 6 5 3 16 16 C 1.53000 * 109.47579 * 84.45365 * 15 6 5 17 17 O 1.42894 * 109.46989 * 64.99865 * 16 15 6 18 18 C 1.42904 * 113.99938 * 180.02562 * 17 16 15 19 19 H 1.08995 * 109.47892 * 310.00192 * 18 17 16 20 20 C 1.53094 * 109.48000 * 189.97906 * 18 17 16 21 21 C 1.53171 * 109.16448 * 182.40942 * 20 18 17 22 22 C 1.53188 * 109.03695 * 56.97904 * 21 20 18 23 23 C 1.53094 * 109.16040 * 303.02306 * 22 21 20 24 24 O 1.42900 * 109.47839 * 70.02737 * 18 17 16 25 25 H 1.09000 * 109.46909 * 299.99964 * 1 2 3 26 26 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47001 * 59.99838 * 1 2 3 28 28 H 1.09002 * 109.46648 * 299.99290 * 5 3 2 29 29 H 1.08998 * 109.47562 * 59.99723 * 5 3 2 30 30 H 0.96997 * 120.00109 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47775 * 204.45937 * 15 6 5 32 32 H 1.09012 * 109.47198 * 324.45625 * 15 6 5 33 33 H 1.08996 * 109.47374 * 185.00247 * 16 15 6 34 34 H 1.09009 * 109.46829 * 305.00119 * 16 15 6 35 35 H 1.09003 * 109.51925 * 302.31558 * 20 18 17 36 36 H 1.08998 * 109.52525 * 62.50287 * 20 18 17 37 37 H 1.08997 * 109.54679 * 176.84229 * 21 20 18 38 38 H 1.09004 * 109.54589 * 297.11381 * 21 20 18 39 39 H 1.08996 * 109.51802 * 62.92909 * 22 21 20 40 40 H 1.08999 * 109.52098 * 183.05473 * 22 21 20 41 41 H 1.09005 * 109.47552 * 177.59351 * 23 22 21 42 42 H 1.09005 * 109.47943 * 297.60855 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.1756 3.3369 -1.1854 8 1 4.6519 4.3061 -1.1939 9 6 3.7597 2.7574 -2.3762 10 7 2.7788 1.8798 -2.3738 11 14 4.5922 3.2232 -3.9824 12 1 5.6578 4.2225 -3.7159 13 1 5.1925 2.0124 -4.5980 14 1 3.5886 3.8044 -4.9098 15 6 4.1900 3.3813 1.2692 16 6 5.6051 3.1027 1.7799 17 8 6.5573 3.6662 0.8757 18 6 7.9178 3.4608 1.2618 19 1 8.0485 3.7553 2.3031 20 6 8.8339 4.3063 0.3732 21 6 10.2928 4.0351 0.7530 22 6 10.5739 2.5353 0.6175 23 6 9.5905 1.7583 1.4967 24 8 8.2524 2.0797 1.1116 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 3.9564 0.7805 0.8892 29 1 3.9558 0.7808 -0.8908 30 1 2.4879 1.4752 -3.2060 31 1 4.0632 4.4531 1.1170 32 1 3.4636 3.0299 2.0021 33 1 5.7305 3.5508 2.7655 34 1 5.7615 2.0260 1.8477 35 1 8.6741 4.0406 -0.6718 36 1 8.6098 5.3628 0.5197 37 1 10.9525 4.5912 0.0870 38 1 10.4655 4.3468 1.7832 39 1 10.4494 2.2340 -0.4225 40 1 11.5945 2.3256 0.9378 41 1 9.7580 0.6885 1.3714 42 1 9.7435 2.0303 2.5411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181733055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:21 Heat of formation + Delta-G solvation = -174.424108 kcal Electronic energy + Delta-G solvation = -24308.683827 eV Core-core repulsion = 20675.278307 eV Total energy + Delta-G solvation = -3633.405520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76951 -40.48711 -38.40133 -37.26385 -36.29134 -34.59588 -33.54693 -31.52285 -30.31163 -29.15823 -27.63042 -25.78393 -25.01090 -24.09706 -22.68069 -21.45231 -21.11694 -18.86398 -18.26815 -18.08862 -17.60550 -17.24790 -16.90459 -16.63925 -16.49874 -15.75876 -15.62900 -15.29657 -15.10696 -14.74739 -14.44800 -14.06016 -13.88165 -13.62229 -13.58621 -13.36749 -13.00611 -12.81702 -12.66506 -12.50626 -12.30448 -12.11191 -12.04594 -11.93787 -11.84243 -11.79029 -11.40991 -11.34556 -11.00657 -10.58317 -10.48817 -10.36662 -8.96692 -7.92088 -5.16904 1.44302 1.47225 1.58484 2.03702 2.34921 2.53888 2.59433 3.14075 3.28251 3.57978 3.84534 3.91615 4.05080 4.06546 4.14383 4.39631 4.43549 4.45459 4.49784 4.52245 4.52613 4.57520 4.66986 4.72456 4.79479 4.83140 4.89574 4.96670 5.05970 5.12008 5.13104 5.16233 5.25530 5.38546 5.70100 5.98331 6.18356 6.28657 6.55346 7.08024 7.54434 7.84065 8.19711 9.18162 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.005206 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.468202 B = 5377.214460 C = 6278.267148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.387 6.387 3 C 0.471 3.529 4 O -0.544 6.544 5 C 0.193 3.807 6 N -0.575 5.575 7 C -0.226 4.226 8 H 0.073 0.927 9 C -0.057 4.057 10 N -0.931 5.931 11 Si 0.961 3.039 12 H -0.273 1.273 13 H -0.290 1.290 14 H -0.301 1.301 15 C 0.144 3.856 16 C 0.056 3.944 17 O -0.373 6.373 18 C 0.248 3.752 19 H 0.065 0.935 20 C -0.142 4.142 21 C -0.112 4.112 22 C -0.157 4.157 23 C 0.062 3.938 24 O -0.433 6.433 25 H 0.053 0.947 26 H 0.126 0.874 27 H 0.032 0.968 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.246 0.754 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.991 -1.311 11.200 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.304 6.304 3 C 0.313 3.687 4 O -0.432 6.432 5 C 0.063 3.937 6 N -0.294 5.294 7 C -0.356 4.356 8 H 0.091 0.909 9 C -0.250 4.250 10 N -0.579 5.579 11 Si 0.791 3.209 12 H -0.197 1.197 13 H -0.217 1.217 14 H -0.229 1.229 15 C 0.019 3.981 16 C -0.022 4.022 17 O -0.293 6.293 18 C 0.153 3.847 19 H 0.083 0.917 20 C -0.180 4.180 21 C -0.150 4.150 22 C -0.195 4.195 23 C -0.014 4.014 24 O -0.355 6.355 25 H 0.071 0.929 26 H 0.144 0.856 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.535 -1.067 10.848 16.611 hybrid contribution -0.306 0.333 -1.151 1.236 sum 12.229 -0.735 9.697 15.624 Atomic orbital electron populations 1.23143 0.77601 1.04064 1.00667 1.86496 1.23187 1.35466 1.85298 1.25621 0.93839 0.80205 0.69068 1.90419 1.67502 1.37759 1.47500 1.20262 0.85169 0.86692 1.01591 1.44085 1.75282 1.07617 1.02427 1.19416 1.29476 1.02621 0.84129 0.90948 1.25321 0.98129 1.01112 1.00445 1.69946 1.26814 1.35189 1.25976 0.85280 0.78119 0.77197 0.80306 1.19724 1.21661 1.22901 1.21036 0.93068 0.96751 0.87280 1.23176 0.89668 0.97563 0.91800 1.88174 1.14175 1.74995 1.51929 1.23130 0.82795 0.81928 0.96884 0.91735 1.22044 0.95643 1.00414 0.99890 1.21590 0.93673 0.96501 1.03200 1.22241 1.00858 0.95615 1.00781 1.22739 0.79805 1.00763 0.98054 1.87869 1.31987 1.27672 1.87954 0.92852 0.85627 0.94869 0.89698 0.89896 0.94403 0.93005 0.91516 0.91193 0.93694 0.92916 0.89817 0.89699 0.89816 0.92523 0.87908 0.88055 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 10.56 113.37 1.20 2.61 16 2 O -0.39 -17.34 10.57 -51.36 -0.54 -17.88 16 3 C 0.47 24.06 5.95 71.24 0.42 24.48 16 4 O -0.54 -31.38 15.70 21.98 0.35 -31.03 16 5 C 0.19 9.45 5.56 85.63 0.48 9.92 16 6 N -0.57 -29.30 1.97 -706.34 -1.39 -30.69 16 7 C -0.23 -12.91 9.43 84.03 0.79 -12.12 16 8 H 0.07 4.18 7.95 -2.91 -0.02 4.15 16 9 C -0.06 -3.29 4.84 84.86 0.41 -2.87 16 10 N -0.93 -56.11 8.90 21.65 0.19 -55.91 16 11 Si 0.96 47.90 29.62 68.60 2.03 49.93 16 12 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 14 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 15 C 0.14 6.00 6.07 86.38 0.52 6.53 16 16 C 0.06 1.97 6.15 71.98 0.44 2.41 16 17 O -0.37 -14.54 9.99 -126.21 -1.26 -15.80 16 18 C 0.25 7.52 3.16 72.01 0.23 7.75 16 19 H 0.07 1.61 8.09 -2.39 -0.02 1.59 16 20 C -0.14 -3.75 5.79 30.68 0.18 -3.57 16 21 C -0.11 -2.01 6.03 30.71 0.19 -1.82 16 22 C -0.16 -2.81 6.14 30.69 0.19 -2.62 16 23 C 0.06 1.29 6.84 72.01 0.49 1.79 16 24 O -0.43 -13.79 10.25 -126.21 -1.29 -15.08 16 25 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 26 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 27 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 28 H 0.09 3.49 8.05 -2.39 -0.02 3.47 16 29 H 0.08 4.50 6.52 -2.39 -0.02 4.48 16 30 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 31 H 0.05 2.23 8.00 -2.39 -0.02 2.21 16 32 H 0.07 2.56 8.11 -2.38 -0.02 2.54 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.62 7.86 -2.38 -0.02 1.60 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -75.41 345.41 4.60 -70.81 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.98 Total: 13.18 kcal Atomic # 6 Polarization: 26.94 SS G_CDS: 5.54 Total: 32.48 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -1.20 Total: -86.61 kcal Atomic # 8 Polarization: -77.04 SS G_CDS: -2.75 Total: -79.79 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -75.41 4.60 -70.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181733055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.612 kcal (2) G-P(sol) polarization free energy of solvation -75.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds