Wall clock time and date at job start Tue Mar 31 2020 02:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81403 * 109.46880 * 2 1 4 4 O 1.42101 * 109.46784 * 296.38929 * 3 2 1 5 5 C 1.81400 * 102.99816 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.47156 * 65.00263 * 5 3 2 7 7 C 1.52998 * 109.47207 * 305.00431 * 5 3 2 8 8 C 1.53006 * 109.47119 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.46836 * 59.99519 * 8 7 5 10 10 C 1.52994 * 109.47329 * 299.99739 * 9 8 7 11 11 C 1.52993 * 109.47090 * 184.99773 * 5 3 2 12 12 H 1.08997 * 109.47132 * 60.00600 * 11 5 3 13 13 N 1.46900 * 109.47556 * 300.00294 * 11 5 3 14 14 C 1.46894 * 111.00559 * 154.99999 * 13 11 5 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00001 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99923 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00006 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46794 * 89.99626 * 21 19 17 23 23 H 1.48502 * 109.47140 * 209.99610 * 21 19 17 24 24 H 1.48501 * 109.46982 * 329.99723 * 21 19 17 25 25 H 1.09003 * 109.46944 * 299.99523 * 1 2 3 26 26 H 1.08994 * 109.47358 * 59.99967 * 1 2 3 27 27 H 1.09000 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46963 * 240.00368 * 2 1 3 29 29 H 1.08994 * 109.47358 * 120.00033 * 2 1 3 30 30 H 1.08994 * 109.47560 * 59.99936 * 7 5 3 31 31 H 1.09008 * 109.46601 * 299.99271 * 7 5 3 32 32 H 1.08997 * 109.46637 * 299.99585 * 8 7 5 33 33 H 1.08999 * 109.46772 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46684 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.47454 * 60.00566 * 9 8 7 36 36 H 1.08997 * 109.47360 * 300.00254 * 10 9 8 37 37 H 1.08994 * 109.47230 * 180.02562 * 10 9 8 38 38 H 1.00899 * 110.99900 * 31.04051 * 13 11 5 39 39 H 1.09002 * 109.47104 * 59.99767 * 14 13 11 40 40 H 1.08998 * 109.46828 * 300.00600 * 14 13 11 41 41 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 42 42 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 43 43 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 44 44 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 45 45 H 0.97000 * 119.99684 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7311 2.3553 -1.2002 5 6 3.9371 1.5059 -0.0008 6 1 4.2488 1.0335 -0.9324 7 6 4.3511 0.6260 1.1804 8 6 5.8715 0.4542 1.1801 9 6 6.5397 1.8248 1.3061 10 6 6.1257 2.7045 0.1248 11 6 4.6058 2.8762 0.1248 12 1 4.2942 3.3485 1.0564 13 7 4.2083 3.7209 -1.0094 14 6 4.3068 5.1455 -0.6649 15 6 3.8852 5.9916 -1.8679 16 6 3.9885 7.4753 -1.5092 17 6 3.5737 8.3087 -2.6943 18 1 3.2668 7.8280 -3.6115 19 6 3.5852 9.6847 -2.6074 20 7 3.2237 10.4119 -3.6419 21 14 4.1154 10.5160 -1.0208 22 1 5.5809 10.7537 -1.0524 23 1 3.4064 11.8132 -0.8808 24 1 3.7805 9.6417 0.1319 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8747 -0.3502 1.0909 31 1 4.0395 1.0985 2.1121 32 1 6.1835 -0.0180 0.2486 33 1 6.1664 -0.1723 2.0219 34 1 7.6228 1.7024 1.3054 35 1 6.2277 2.2969 2.2377 36 1 6.4378 2.2324 -0.8067 37 1 6.6020 3.6807 0.2143 38 1 3.2785 3.4887 -1.3248 39 1 5.3358 5.3838 -0.3954 40 1 3.6511 5.3615 0.1786 41 1 2.8562 5.7532 -2.1370 42 1 4.5407 5.7756 -2.7116 43 1 3.3332 7.6916 -0.6654 44 1 5.0175 7.7134 -1.2404 45 1 3.2314 11.3799 -3.5806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225318018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:36 Heat of formation + Delta-G solvation = -67.863083 kcal Electronic energy + Delta-G solvation = -21331.215136 eV Core-core repulsion = 18281.016414 eV Total energy + Delta-G solvation = -3050.198722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 4.49 seconds Orbital eigenvalues (eV) -39.02632 -36.20268 -35.43805 -33.42017 -33.00955 -31.54869 -31.10693 -28.94738 -26.01887 -24.02577 -23.25492 -22.33082 -21.30923 -20.25898 -19.78059 -17.69187 -16.64032 -16.37913 -15.98001 -15.33651 -15.00728 -14.78965 -14.60576 -14.38205 -14.08597 -13.79541 -13.57894 -13.12639 -12.82381 -12.68815 -12.46832 -12.36041 -12.13775 -12.11677 -11.63138 -11.58353 -11.49515 -11.33036 -11.13944 -10.87279 -10.80805 -10.69452 -10.47713 -9.85440 -9.73958 -9.62337 -9.46270 -9.07766 -8.45619 -8.42041 -8.13034 -5.95659 -3.92796 1.21908 2.32577 3.36169 3.42635 3.47035 3.48340 4.16049 4.39391 4.52438 4.56722 4.67984 4.69187 4.73239 4.89792 5.03856 5.11004 5.14757 5.25951 5.28767 5.38057 5.41529 5.48199 5.55963 5.60224 5.70577 5.75133 5.75557 5.84186 5.89611 5.92529 5.98664 6.12914 6.26513 6.33905 6.67142 6.70478 7.03128 7.32420 7.47319 7.55101 7.74771 7.89399 8.65159 9.10864 9.66901 11.18157 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.003782 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.441789 B = 7401.418011 C = 8506.679531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.450 4.450 3 S 1.224 4.776 4 O -0.831 6.831 5 C -0.411 4.411 6 H 0.099 0.901 7 C -0.091 4.091 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.104 4.104 11 C 0.115 3.885 12 H 0.052 0.948 13 N -0.705 5.705 14 C 0.059 3.941 15 C -0.101 4.101 16 C -0.012 4.012 17 C -0.517 4.517 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.355 0.645 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.014 0.986 44 H 0.011 0.989 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.905 -25.229 17.009 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.587 4.587 3 S 1.424 4.576 4 O -0.825 6.825 5 C -0.529 4.529 6 H 0.118 0.882 7 C -0.130 4.130 8 C -0.154 4.154 9 C -0.158 4.158 10 C -0.143 4.143 11 C 0.003 3.997 12 H 0.069 0.931 13 N -0.346 5.346 14 C -0.069 4.069 15 C -0.139 4.139 16 C -0.050 4.050 17 C -0.555 4.555 18 H 0.089 0.911 19 C -0.137 4.137 20 N -0.545 5.545 21 Si 0.709 3.291 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.135 0.865 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.182 0.818 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.032 0.968 44 H 0.029 0.971 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.874 -24.233 16.591 29.381 hybrid contribution 0.334 -0.540 -0.658 0.914 sum 1.208 -24.772 15.932 29.478 Atomic orbital electron populations 1.21369 0.92040 1.02987 1.02889 1.27564 1.03897 1.19881 1.07339 1.70732 0.86524 0.87360 1.12988 1.93137 1.75607 1.62984 1.50773 1.27640 1.18387 1.02234 1.04600 0.88240 1.21262 0.97081 0.98288 0.96380 1.21518 0.94632 0.97455 1.01803 1.21552 0.99988 0.95440 0.98805 1.21514 0.94401 0.99995 0.98383 1.21105 0.95960 0.89263 0.93328 0.93061 1.60666 1.35155 1.04556 1.34229 1.22161 1.00460 0.86266 0.98060 1.21448 1.00734 0.95593 0.96144 1.19540 0.96110 0.91909 0.97411 1.21182 1.44254 0.90966 0.99069 0.91060 1.25051 0.94911 0.97464 0.96255 1.69928 1.48985 1.05550 1.30083 0.86751 0.78855 0.78776 0.84736 1.20352 1.21462 1.19032 0.91388 0.92023 0.91669 0.89710 0.86521 0.91370 0.90362 0.92082 0.91765 0.91924 0.91814 0.91491 0.91482 0.81841 0.91528 0.95769 0.92856 0.92108 0.96802 0.97086 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 9.92 37.16 0.37 -0.59 16 2 C -0.45 -3.14 6.04 37.16 0.22 -2.92 16 3 S 1.22 11.37 12.38 -107.50 -1.33 10.04 16 4 O -0.83 -13.48 15.55 -35.23 -0.55 -14.03 16 5 C -0.41 -3.84 2.35 -26.74 -0.06 -3.91 16 6 H 0.10 1.10 8.14 -51.92 -0.42 0.68 16 7 C -0.09 -0.54 4.95 -26.73 -0.13 -0.68 16 8 C -0.12 -0.78 5.92 -26.73 -0.16 -0.93 16 9 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 10 C -0.10 -1.16 5.42 -26.76 -0.15 -1.30 16 11 C 0.11 1.36 1.97 -67.74 -0.13 1.23 16 12 H 0.05 0.55 7.80 -51.93 -0.40 0.14 16 13 N -0.71 -11.55 6.31 -106.76 -0.67 -12.22 16 14 C 0.06 1.06 5.48 -3.83 -0.02 1.04 16 15 C -0.10 -2.26 5.41 -26.73 -0.14 -2.40 16 16 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 17 C -0.52 -15.64 9.66 -34.44 -0.33 -15.97 16 18 H 0.07 2.33 7.99 -52.49 -0.42 1.92 16 19 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.91 -29.07 13.96 55.43 0.77 -28.30 16 21 Si 0.88 22.46 27.47 -169.99 -4.67 17.79 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.12 0.46 6.90 -51.93 -0.36 0.10 16 30 H 0.07 0.29 6.51 -51.93 -0.34 -0.05 16 31 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.81 7.45 -51.93 -0.39 0.42 16 38 H 0.36 6.26 4.99 -39.29 -0.20 6.06 16 39 H 0.07 1.15 7.43 -51.93 -0.39 0.76 16 40 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 41 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 44 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 45 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -36.81 355.05 -10.34 -47.15 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.34 Total: 0.34 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -0.91 Total: -26.13 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.10 Total: -40.52 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.55 Total: -14.03 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.67 Total: 17.79 kcal Atomic # 16 Polarization: 11.37 SS G_CDS: -1.33 Total: 10.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.81 -10.34 -47.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225318018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.712 kcal (2) G-P(sol) polarization free energy of solvation -36.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.50 seconds