Wall clock time and date at job start Tue Mar 31 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81403 * 109.46880 * 2 1 4 4 O 1.42101 * 109.46784 * 296.38929 * 3 2 1 5 5 C 1.81400 * 102.99816 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.47156 * 65.00263 * 5 3 2 7 7 C 1.52998 * 109.47207 * 305.00431 * 5 3 2 8 8 C 1.53006 * 109.47119 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.46836 * 59.99519 * 8 7 5 10 10 C 1.52994 * 109.47329 * 299.99739 * 9 8 7 11 11 C 1.52993 * 109.47090 * 184.99773 * 5 3 2 12 12 H 1.08997 * 109.47132 * 60.00600 * 11 5 3 13 13 N 1.46900 * 109.47556 * 300.00294 * 11 5 3 14 14 C 1.46894 * 111.00559 * 154.99999 * 13 11 5 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00001 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99923 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00006 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46794 * 89.99626 * 21 19 17 23 23 H 1.48502 * 109.47140 * 209.99610 * 21 19 17 24 24 H 1.48501 * 109.46982 * 329.99723 * 21 19 17 25 25 H 1.09003 * 109.46944 * 299.99523 * 1 2 3 26 26 H 1.08994 * 109.47358 * 59.99967 * 1 2 3 27 27 H 1.09000 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46963 * 240.00368 * 2 1 3 29 29 H 1.08994 * 109.47358 * 120.00033 * 2 1 3 30 30 H 1.08994 * 109.47560 * 59.99936 * 7 5 3 31 31 H 1.09008 * 109.46601 * 299.99271 * 7 5 3 32 32 H 1.08997 * 109.46637 * 299.99585 * 8 7 5 33 33 H 1.08999 * 109.46772 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46684 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.47454 * 60.00566 * 9 8 7 36 36 H 1.08997 * 109.47360 * 300.00254 * 10 9 8 37 37 H 1.08994 * 109.47230 * 180.02562 * 10 9 8 38 38 H 1.00899 * 110.99900 * 31.04051 * 13 11 5 39 39 H 1.09002 * 109.47104 * 59.99767 * 14 13 11 40 40 H 1.08998 * 109.46828 * 300.00600 * 14 13 11 41 41 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 42 42 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 43 43 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 44 44 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 45 45 H 0.97000 * 119.99684 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7311 2.3553 -1.2002 5 6 3.9371 1.5059 -0.0008 6 1 4.2488 1.0335 -0.9324 7 6 4.3511 0.6260 1.1804 8 6 5.8715 0.4542 1.1801 9 6 6.5397 1.8248 1.3061 10 6 6.1257 2.7045 0.1248 11 6 4.6058 2.8762 0.1248 12 1 4.2942 3.3485 1.0564 13 7 4.2083 3.7209 -1.0094 14 6 4.3068 5.1455 -0.6649 15 6 3.8852 5.9916 -1.8679 16 6 3.9885 7.4753 -1.5092 17 6 3.5737 8.3087 -2.6943 18 1 3.2668 7.8280 -3.6115 19 6 3.5852 9.6847 -2.6074 20 7 3.2237 10.4119 -3.6419 21 14 4.1154 10.5160 -1.0208 22 1 5.5809 10.7537 -1.0524 23 1 3.4064 11.8132 -0.8808 24 1 3.7805 9.6417 0.1319 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8747 -0.3502 1.0909 31 1 4.0395 1.0985 2.1121 32 1 6.1835 -0.0180 0.2486 33 1 6.1664 -0.1723 2.0219 34 1 7.6228 1.7024 1.3054 35 1 6.2277 2.2969 2.2377 36 1 6.4378 2.2324 -0.8067 37 1 6.6020 3.6807 0.2143 38 1 3.2785 3.4887 -1.3248 39 1 5.3358 5.3838 -0.3954 40 1 3.6511 5.3615 0.1786 41 1 2.8562 5.7532 -2.1370 42 1 4.5407 5.7756 -2.7116 43 1 3.3332 7.6916 -0.6654 44 1 5.0175 7.7134 -1.2404 45 1 3.2314 11.3799 -3.5806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225318018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:29 Heat of formation + Delta-G solvation = -94.591978 kcal Electronic energy + Delta-G solvation = -21332.374188 eV Core-core repulsion = 18281.016414 eV Total energy + Delta-G solvation = -3051.357774 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.87247 -37.30123 -36.72994 -35.19141 -33.75156 -33.30780 -31.82452 -30.24519 -27.69623 -24.76827 -24.23440 -23.56803 -22.26518 -21.89722 -20.74683 -18.93663 -18.46419 -17.23118 -16.97432 -16.44744 -16.08531 -15.97841 -15.80754 -15.34233 -15.11145 -14.87041 -14.80749 -14.44579 -14.08931 -13.77597 -13.56993 -13.42703 -13.35324 -13.09149 -12.78007 -12.73230 -12.53814 -12.33840 -12.16324 -12.05681 -11.88383 -11.77086 -11.65011 -11.53341 -11.37774 -11.33698 -11.01674 -10.78197 -10.54941 -9.35962 -9.21701 -8.30957 -6.36764 0.49753 1.35403 1.39066 1.51756 1.64253 2.36601 2.69432 3.03638 3.17161 3.62273 3.96440 3.98377 4.02150 4.12305 4.17799 4.25309 4.26470 4.39977 4.45318 4.53386 4.55670 4.60266 4.65049 4.81580 4.87568 4.90806 4.92635 4.98572 5.02680 5.08014 5.11269 5.21804 5.28132 5.32645 5.34662 5.40751 5.45811 5.55027 5.59641 5.63552 6.13696 6.27874 6.43479 6.70860 7.27609 8.86722 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.003782 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.441789 B = 7401.418011 C = 8506.679531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.436 4.436 3 S 1.247 4.753 4 O -0.911 6.911 5 C -0.400 4.400 6 H 0.075 0.925 7 C -0.092 4.092 8 C -0.116 4.116 9 C -0.115 4.115 10 C -0.104 4.104 11 C 0.106 3.894 12 H 0.075 0.925 13 N -0.726 5.726 14 C 0.071 3.929 15 C -0.094 4.094 16 C -0.005 4.005 17 C -0.541 4.541 18 H 0.019 0.981 19 C -0.001 4.001 20 N -0.955 5.955 21 Si 0.962 3.038 22 H -0.263 1.263 23 H -0.281 1.281 24 H -0.241 1.241 25 H 0.091 0.909 26 H 0.029 0.971 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.162 0.838 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.347 0.653 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.030 0.970 42 H 0.040 0.960 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 -26.997 21.840 34.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.575 4.575 3 S 1.451 4.549 4 O -0.905 6.905 5 C -0.519 4.519 6 H 0.093 0.907 7 C -0.130 4.130 8 C -0.154 4.154 9 C -0.153 4.153 10 C -0.143 4.143 11 C -0.004 4.004 12 H 0.092 0.908 13 N -0.367 5.367 14 C -0.058 4.058 15 C -0.132 4.132 16 C -0.043 4.043 17 C -0.579 4.579 18 H 0.038 0.962 19 C -0.197 4.197 20 N -0.596 5.596 21 Si 0.784 3.216 22 H -0.188 1.188 23 H -0.206 1.206 24 H -0.164 1.164 25 H 0.110 0.890 26 H 0.048 0.952 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.180 0.820 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.173 0.827 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.750 -26.013 21.418 33.741 hybrid contribution 0.042 -0.109 -2.282 2.285 sum 1.791 -26.122 19.136 32.431 Atomic orbital electron populations 1.21488 0.92071 1.03997 1.02612 1.27477 1.03841 1.17248 1.08962 1.69654 0.85983 0.88527 1.10773 1.93027 1.77504 1.66843 1.53128 1.27564 1.17457 1.01365 1.05476 0.90657 1.21442 0.96839 0.98998 0.95753 1.21542 0.94917 0.96756 1.02209 1.21547 1.00427 0.95680 0.97688 1.21519 0.93794 0.99925 0.99084 1.21338 0.96622 0.89947 0.92516 0.90764 1.60643 1.34849 1.04217 1.36952 1.21935 1.01181 0.86767 0.95931 1.21293 0.99104 0.95102 0.97745 1.19458 0.96689 0.92681 0.95477 1.21517 1.44970 0.92174 0.99213 0.96226 1.26181 0.94529 0.98055 1.00976 1.70099 1.50154 1.06235 1.33069 0.85490 0.78978 0.77698 0.79442 1.18826 1.20650 1.16392 0.88999 0.95160 0.89966 0.90936 0.81997 0.88788 0.87205 0.93489 0.89190 0.91602 0.90114 0.93750 0.92806 0.82745 0.90388 0.94144 0.95063 0.94160 0.95617 0.95651 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.92 71.98 0.71 -1.07 16 2 C -0.44 -4.96 6.04 71.98 0.43 -4.53 16 3 S 1.25 21.96 12.38 -56.49 -0.70 21.26 16 4 O -0.91 -31.14 15.55 -148.98 -2.32 -33.46 16 5 C -0.40 -6.84 2.35 30.59 0.07 -6.77 16 6 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 7 C -0.09 -0.69 4.95 30.60 0.15 -0.54 16 8 C -0.12 -1.12 5.92 30.60 0.18 -0.94 16 9 C -0.12 -1.51 5.92 30.59 0.18 -1.33 16 10 C -0.10 -2.21 5.42 30.58 0.17 -2.04 16 11 C 0.11 2.38 1.97 44.90 0.09 2.46 16 12 H 0.07 1.35 7.80 -2.39 -0.02 1.34 16 13 N -0.73 -24.20 6.31 -491.68 -3.10 -27.30 16 14 C 0.07 2.52 5.48 86.30 0.47 2.99 16 15 C -0.09 -4.37 5.41 30.59 0.17 -4.20 16 16 C -0.01 -0.26 4.04 29.85 0.12 -0.14 16 17 C -0.54 -34.09 9.66 25.60 0.25 -33.84 16 18 H 0.02 1.37 7.99 -2.91 -0.02 1.35 16 19 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 20 N -0.95 -63.19 13.96 21.45 0.30 -62.89 16 21 Si 0.96 45.83 27.47 68.60 1.88 47.71 16 22 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.16 0.40 6.90 -2.39 -0.02 0.38 16 30 H 0.09 0.28 6.51 -2.39 -0.02 0.27 16 31 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.26 7.45 -2.39 -0.02 1.24 16 38 H 0.35 12.80 4.99 -89.70 -0.45 12.35 16 39 H 0.08 2.59 7.43 -2.39 -0.02 2.57 16 40 H 0.04 1.30 8.05 -2.39 -0.02 1.28 16 41 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.03 1.25 7.20 -2.39 -0.02 1.23 16 44 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 45 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -86.66 355.05 -0.05 -86.71 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.43 Total: 17.55 kcal Atomic # 6 Polarization: -53.03 SS G_CDS: 3.46 Total: -49.57 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -2.80 Total: -90.20 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -2.32 Total: -33.46 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.88 Total: 47.71 kcal Atomic # 16 Polarization: 21.96 SS G_CDS: -0.70 Total: 21.26 kcal Total: -86.66 -0.05 -86.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225318018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.885 kcal (2) G-P(sol) polarization free energy of solvation -86.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds