Wall clock time and date at job start Tue Mar 31 2020 03:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47250 * 325.13321 * 3 2 1 5 5 C 1.37097 * 120.00211 * 263.55264 * 4 3 2 6 6 H 1.08005 * 119.99875 * 210.96430 * 5 4 3 7 7 C 1.38944 * 120.00013 * 30.95905 * 5 4 3 8 8 N 1.31411 * 120.00543 * 353.82006 * 7 5 4 9 9 Si 1.86798 * 119.99981 * 173.82239 * 7 5 4 10 10 H 1.48503 * 109.47612 * 89.99769 * 9 7 5 11 11 H 1.48503 * 109.47440 * 210.00185 * 9 7 5 12 12 H 1.48502 * 109.47316 * 329.99814 * 9 7 5 13 13 C 1.34779 * 119.99524 * 83.54524 * 4 3 2 14 14 O 1.21302 * 119.99276 * 180.02562 * 13 4 3 15 15 C 1.50688 * 120.00553 * 0.02562 * 13 4 3 16 16 C 1.50701 * 109.47415 * 179.97438 * 15 13 4 17 17 C 1.37963 * 120.07854 * 97.75273 * 16 15 13 18 18 C 1.38339 * 120.15550 * 179.97438 * 17 16 15 19 19 C 1.38392 * 120.29989 * 0.02562 * 18 17 16 20 20 C 1.37921 * 120.15120 * 0.02562 * 19 18 17 21 21 C 1.39613 * 120.07579 * 277.47312 * 16 15 13 22 22 C 1.47724 * 120.14910 * 359.97438 * 21 16 15 23 23 O 1.21475 * 119.99810 * 5.43422 * 22 21 16 24 24 O 1.34713 * 119.99969 * 185.44435 * 22 21 16 25 25 H 1.08998 * 109.47113 * 205.13702 * 3 2 1 26 26 H 1.09001 * 109.47125 * 85.13239 * 3 2 1 27 27 H 0.96994 * 120.00390 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.47537 * 299.99821 * 15 13 4 29 29 H 1.09003 * 109.47317 * 59.99590 * 15 13 4 30 30 H 1.08004 * 119.91996 * 359.97438 * 17 16 15 31 31 H 1.07998 * 119.85400 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.92441 * 179.97438 * 19 18 17 33 33 H 1.07996 * 120.07689 * 179.97438 * 20 19 18 34 34 H 0.96695 * 117.00238 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1324 0.7896 5 6 3.4511 -0.9516 2.1017 6 1 4.2308 -1.5577 2.5390 7 6 2.8070 0.0113 2.8688 8 7 1.9456 0.8301 2.3080 9 14 3.1655 0.1420 4.6973 10 1 4.2948 1.0816 4.9145 11 1 1.9600 0.6455 5.4035 12 1 3.5267 -1.1971 5.2280 13 6 3.1984 -2.3525 0.2261 14 8 3.6027 -3.2908 0.8801 15 6 2.8095 -2.5512 -1.2161 16 6 3.0157 -3.9944 -1.5978 17 6 1.9503 -4.8709 -1.5893 18 6 2.1376 -6.1959 -1.9399 19 6 3.3934 -6.6518 -2.3008 20 6 4.4675 -5.7867 -2.3126 21 6 4.2842 -4.4463 -1.9665 22 6 5.4284 -3.5121 -1.9844 23 8 5.2892 -2.3736 -1.5843 24 8 6.6260 -3.9227 -2.4447 25 1 2.9709 0.9311 0.4365 26 1 2.9714 -0.0864 -1.0240 27 1 1.4962 1.5025 2.8434 28 1 1.7607 -2.2860 -1.3496 29 1 3.4283 -1.9161 -1.8501 30 1 0.9676 -4.5217 -1.3083 31 1 1.3002 -6.8779 -1.9312 32 1 3.5329 -7.6876 -2.5731 33 1 5.4471 -6.1439 -2.5941 34 1 7.3445 -3.2757 -2.4372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228043175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:40 Heat of formation + Delta-G solvation = -75.687814 kcal Electronic energy + Delta-G solvation = -22666.949779 eV Core-core repulsion = 19143.875700 eV Total energy + Delta-G solvation = -3523.074079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.69903 -40.42215 -39.43423 -37.55885 -37.03507 -36.13319 -33.98547 -33.35254 -32.29967 -29.45605 -28.80139 -26.40946 -25.27638 -23.26276 -22.12470 -20.77897 -19.65335 -19.01485 -18.28186 -18.15973 -17.97363 -16.72283 -16.69458 -16.34401 -16.29438 -15.82186 -15.37074 -15.15399 -14.72693 -14.59055 -14.20739 -14.01259 -13.73844 -13.50668 -13.40143 -13.19188 -13.02074 -12.85802 -12.65972 -12.47313 -12.38486 -12.18878 -12.13345 -12.02026 -11.13852 -11.00478 -10.50724 -9.96635 -9.82463 -9.71992 -8.37020 -6.06458 -0.22267 0.40392 1.37676 1.42254 1.52683 1.62636 1.88526 2.06600 2.15127 2.25617 2.34155 2.77871 3.03217 3.27646 3.59162 3.70994 3.82698 4.13713 4.18998 4.19508 4.34233 4.52217 4.58676 4.63230 4.73431 4.92907 5.01834 5.05432 5.33518 5.43449 5.49572 5.55728 5.67674 5.95224 6.12043 6.44629 6.98875 7.05431 7.13782 7.35764 7.96145 8.64905 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.005424 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.403887 B = 5161.361609 C = 5518.921055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.263 3.737 3 C 0.225 3.775 4 N -0.461 5.461 5 C -0.328 4.328 6 H 0.075 0.925 7 C 0.004 3.996 8 N -0.900 5.900 9 Si 0.985 3.015 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.280 1.280 13 C 0.485 3.515 14 O -0.610 6.610 15 C -0.104 4.104 16 C -0.014 4.014 17 C -0.143 4.143 18 C -0.077 4.077 19 C -0.134 4.134 20 C -0.062 4.062 21 C -0.141 4.141 22 C 0.522 3.478 23 O -0.530 6.530 24 O -0.504 6.504 25 H 0.129 0.871 26 H 0.119 0.881 27 H 0.273 0.727 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.942 -9.748 -12.832 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.054 4.054 3 C 0.098 3.902 4 N -0.182 5.182 5 C -0.456 4.456 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.540 5.540 9 Si 0.810 3.190 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.276 3.724 14 O -0.495 6.495 15 C -0.143 4.143 16 C -0.015 4.015 17 C -0.161 4.161 18 C -0.094 4.094 19 C -0.151 4.151 20 C -0.080 4.080 21 C -0.142 4.142 22 C 0.368 3.632 23 O -0.422 6.422 24 O -0.318 6.318 25 H 0.146 0.854 26 H 0.136 0.864 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.178 0.822 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 4.032 -10.002 -12.332 16.383 hybrid contribution 0.833 1.082 1.376 1.939 sum 4.865 -8.920 -10.956 14.943 Atomic orbital electron populations 1.80876 1.14429 1.10498 1.13327 1.29731 0.95723 0.90965 0.88974 1.18961 0.80206 0.94041 0.96951 1.43559 1.57800 1.06006 1.10805 1.19483 1.18967 1.20685 0.86450 0.90741 1.25997 0.94675 0.95522 1.03473 1.69739 1.27779 1.19245 1.37219 0.85037 0.77941 0.78254 0.77778 1.18575 1.20700 1.20530 1.20525 0.80699 0.82043 0.89158 1.90489 1.51509 1.41464 1.66057 1.20880 1.03175 0.95647 0.94627 1.19572 0.92920 0.94967 0.93994 1.21209 0.98510 0.94636 1.01699 1.21765 0.99020 0.94531 0.94114 1.21559 0.91720 1.01393 1.00455 1.21692 1.01169 0.90591 0.94553 1.19020 0.90741 0.95052 1.09395 1.21069 0.83285 0.85908 0.72975 1.90867 1.84272 1.22089 1.44966 1.84471 1.20594 1.49196 1.77497 0.85378 0.86355 0.91729 0.89188 0.85652 0.85346 0.82206 0.81420 0.82504 0.70838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.58 18.54 20.01 0.37 -24.21 16 2 C 0.26 11.98 12.77 89.44 1.14 13.13 16 3 C 0.23 9.55 4.90 84.57 0.41 9.96 16 4 N -0.46 -23.13 2.60 -645.41 -1.68 -24.81 16 5 C -0.33 -18.07 9.11 84.04 0.77 -17.30 16 6 H 0.07 4.38 7.56 -2.91 -0.02 4.36 16 7 C 0.00 0.22 5.36 84.93 0.45 0.67 16 8 N -0.90 -46.60 8.89 21.66 0.19 -46.41 16 9 Si 0.99 42.87 29.56 68.60 2.03 44.90 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 C 0.49 23.69 6.32 87.65 0.55 24.25 16 14 O -0.61 -34.23 15.81 -3.10 -0.05 -34.28 16 15 C -0.10 -3.94 3.72 29.10 0.11 -3.83 16 16 C -0.01 -0.47 4.42 -19.60 -0.09 -0.56 16 17 C -0.14 -4.15 9.66 22.23 0.21 -3.93 16 18 C -0.08 -1.64 10.04 22.33 0.22 -1.42 16 19 C -0.13 -2.55 10.03 22.23 0.22 -2.33 16 20 C -0.06 -1.44 9.62 22.54 0.22 -1.23 16 21 C -0.14 -4.38 5.86 -20.10 -0.12 -4.50 16 22 C 0.52 16.36 8.21 70.33 0.58 16.94 16 23 O -0.53 -19.98 13.18 19.92 0.26 -19.72 16 24 O -0.50 -11.02 12.70 -56.23 -0.71 -11.73 16 25 H 0.13 5.64 6.55 -2.39 -0.02 5.62 16 26 H 0.12 4.01 6.71 -2.39 -0.02 3.99 16 27 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 28 H 0.09 3.22 7.35 -2.39 -0.02 3.20 16 29 H 0.13 4.46 5.17 -2.39 -0.01 4.44 16 30 H 0.13 3.61 8.05 -2.91 -0.02 3.58 16 31 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.16 2.83 7.63 -2.91 -0.02 2.80 16 34 H 0.43 5.60 9.11 -74.06 -0.67 4.92 16 Total: -1.00 -75.25 305.16 5.61 -69.64 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.50 Total: 16.76 kcal Atomic # 6 Polarization: 25.16 SS G_CDS: 4.69 Total: 29.85 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -1.11 Total: -95.43 kcal Atomic # 8 Polarization: -65.22 SS G_CDS: -0.50 Total: -65.72 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -75.25 5.61 -69.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228043175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.045 kcal (2) G-P(sol) polarization free energy of solvation -75.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds