Wall clock time and date at job start Tue Mar 31 2020 04:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47169 * 2 1 4 4 C 1.50706 * 109.46626 * 240.00825 * 2 1 3 5 5 H 1.07999 * 119.99433 * 239.99768 * 4 2 1 6 6 C 1.37871 * 120.00236 * 59.99711 * 4 2 1 7 7 N 1.31509 * 120.00376 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47219 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47051 * 120.00118 * 8 6 4 11 11 H 1.48497 * 109.47424 * 239.99932 * 8 6 4 12 12 N 1.46489 * 109.47367 * 120.00634 * 2 1 3 13 13 C 1.46504 * 120.00051 * 59.99646 * 12 2 1 14 14 S 1.65606 * 120.00129 * 239.99892 * 12 2 1 15 15 O 1.42105 * 106.40008 * 336.45751 * 14 12 2 16 16 O 1.42098 * 106.40370 * 203.53936 * 14 12 2 17 17 N 1.65595 * 107.22013 * 89.99663 * 14 12 2 18 18 C 1.46508 * 119.99876 * 65.00349 * 17 14 12 19 19 C 1.50701 * 109.47193 * 165.00215 * 18 17 14 20 20 C 1.41378 * 126.57854 * 89.99730 * 19 18 17 21 21 C 1.34520 * 106.83811 * 179.97438 * 20 19 18 22 22 O 1.34303 * 108.42052 * 0.02562 * 21 20 19 23 23 C 1.34307 * 109.47787 * 359.76654 * 22 21 20 24 24 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.46956 * 299.99542 * 1 2 3 26 26 H 1.09001 * 109.47294 * 59.99252 * 1 2 3 27 27 H 0.96998 * 120.00587 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47095 * 270.00091 * 13 12 2 29 29 H 1.08991 * 109.46942 * 30.00504 * 13 12 2 30 30 H 1.09009 * 109.46796 * 150.00143 * 13 12 2 31 31 H 0.96997 * 120.00034 * 245.00377 * 17 14 12 32 32 H 1.09006 * 109.46715 * 285.00199 * 18 17 14 33 33 H 1.08993 * 109.46869 * 44.99478 * 18 17 14 34 34 H 1.07994 * 126.58392 * 359.92699 * 20 19 18 35 35 H 1.07998 * 125.78843 * 179.97438 * 21 20 19 36 36 H 1.08001 * 125.79409 * 180.23969 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2307 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3222 -1.1192 -4.0081 9 1 3.1472 -2.2861 -3.6041 10 1 1.1675 -1.5862 -4.8167 11 1 3.1469 -0.1854 -4.8163 12 7 2.0184 -0.6907 1.1960 13 6 1.6644 -2.0933 1.4277 14 16 2.9705 0.1140 2.2861 15 8 3.5795 1.1828 1.5748 16 8 3.7119 -0.8791 2.9812 17 7 1.9609 0.8088 3.3998 18 6 1.1512 -0.0356 4.2817 19 6 0.6171 0.7945 5.4205 20 6 -0.6052 1.5046 5.4446 21 6 -0.6846 2.1030 6.6467 22 8 0.4189 1.7951 7.3477 23 6 1.2097 0.9979 6.6108 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.7093 1.1621 -3.4843 28 1 0.7376 -2.1445 1.9991 29 1 1.5295 -2.5968 0.4706 30 1 2.4630 -2.5820 1.9861 31 1 1.9057 1.7748 3.4682 32 1 0.3190 -0.4570 3.7177 33 1 1.7672 -0.8427 4.6780 34 1 -1.3348 1.5572 4.6501 35 1 -1.4973 2.7261 6.9897 36 1 2.1609 0.5910 6.9206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282939966.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:11 Heat of formation + Delta-G solvation = -82.511341 kcal Electronic energy + Delta-G solvation = -21441.024526 eV Core-core repulsion = 18053.098508 eV Total energy + Delta-G solvation = -3387.926018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.45090 -38.33104 -37.87897 -36.88368 -36.81116 -34.50870 -33.40212 -30.90365 -30.52057 -27.22745 -27.03606 -26.69843 -22.61727 -22.46391 -21.46966 -20.26163 -18.94786 -18.65447 -18.52989 -17.86817 -17.23893 -16.85855 -16.56622 -15.88714 -15.39220 -15.18769 -15.10031 -14.82023 -14.32688 -13.84549 -13.75204 -13.65236 -13.44862 -13.20211 -13.12322 -12.99648 -12.98067 -12.72945 -12.67501 -12.59142 -12.18460 -12.11830 -11.89493 -11.14662 -10.74662 -10.52941 -10.47270 -9.65178 -9.47267 -8.11004 -6.24296 -0.32376 0.86977 1.42028 1.45095 1.55283 1.58503 2.16768 2.30537 2.44583 2.68403 3.17636 3.46214 3.80285 3.95685 4.11418 4.19700 4.42118 4.62601 4.74769 4.78435 4.81258 4.89260 5.02934 5.07659 5.14370 5.18966 5.28350 5.31143 5.55825 5.62662 5.70530 5.88854 6.04909 6.19664 6.20378 6.31531 6.83814 7.44644 8.93433 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.028695 B = 0.004477 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.538735 B = 6252.086931 C = 6671.706087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.996 5.996 13 C 0.089 3.911 14 S 2.798 3.202 15 O -1.019 7.019 16 O -1.007 7.007 17 N -1.116 6.116 18 C 0.188 3.812 19 C -0.207 4.207 20 C -0.219 4.219 21 C -0.040 4.040 22 O -0.186 6.186 23 C -0.022 4.022 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.264 0.736 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.419 0.581 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.236 0.764 36 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.286 -0.832 17.550 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.168 3.832 3 H 0.041 0.959 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.200 1.200 11 H -0.211 1.211 12 N -0.838 5.838 13 C -0.056 4.056 14 S 2.807 3.193 15 O -1.003 7.003 16 O -0.990 6.990 17 N -0.878 5.878 18 C 0.063 3.937 19 C -0.210 4.210 20 C -0.238 4.238 21 C -0.106 4.106 22 O -0.081 6.081 23 C -0.091 4.091 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.253 0.747 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.173 0.827 35 H 0.252 0.748 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.331 -0.808 17.689 18.229 hybrid contribution -0.160 0.178 -1.395 1.416 sum -4.491 -0.631 16.293 16.913 Atomic orbital electron populations 1.21890 0.96780 1.00208 1.00343 1.18393 0.92269 0.91323 0.81202 0.95861 1.21704 1.31507 1.13034 0.91470 0.92364 1.25632 0.95229 0.95716 1.01671 1.69981 1.37415 1.23714 1.24258 0.85549 0.78248 0.78596 0.79478 1.19346 1.20028 1.21111 1.57517 1.69927 1.21129 1.35189 1.21525 1.00683 0.80648 1.02746 1.01139 0.73548 0.72274 0.72308 1.93553 1.75944 1.57493 1.73329 1.93499 1.69872 1.61157 1.74507 1.55895 1.62070 1.17989 1.51889 1.19598 0.94591 0.91282 0.88242 1.20451 0.97785 1.06013 0.96795 1.22020 0.99313 1.02601 0.99909 1.24676 0.90663 1.03532 0.91743 1.84103 1.28031 1.53251 1.42751 1.24446 0.97725 0.96069 0.90874 0.93874 0.94669 0.91710 0.92683 0.91233 0.91050 0.90804 0.74667 0.90171 0.89175 0.82684 0.74811 0.75862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.97 71.98 0.65 -5.23 16 2 C 0.27 13.32 2.62 44.25 0.12 13.44 16 3 H 0.02 1.31 6.91 -2.38 -0.02 1.29 16 4 C -0.54 -29.00 7.99 25.60 0.20 -28.79 16 5 H 0.06 3.12 7.33 -2.91 -0.02 3.10 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.91 -51.35 11.32 21.44 0.24 -51.11 16 8 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 N -1.00 -40.02 3.12 -520.44 -1.62 -41.64 16 13 C 0.09 2.96 9.66 127.77 1.23 4.19 16 14 S 2.80 106.95 6.14 -56.49 -0.35 106.60 16 15 O -1.02 -48.35 16.70 -128.00 -2.14 -50.49 16 16 O -1.01 -39.65 16.21 -128.00 -2.07 -41.73 16 17 N -1.12 -31.81 6.05 -190.77 -1.15 -32.96 16 18 C 0.19 4.35 6.76 85.63 0.58 4.92 16 19 C -0.21 -4.32 5.56 -19.94 -0.11 -4.43 16 20 C -0.22 -4.15 10.87 22.19 0.24 -3.91 16 21 C -0.04 -0.61 12.09 66.97 0.81 0.20 16 22 O -0.19 -3.44 10.65 -2.53 -0.03 -3.47 16 23 C -0.02 -0.40 12.01 66.97 0.80 0.40 16 24 H 0.04 1.78 7.67 -2.39 -0.02 1.76 16 25 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 27 H 0.26 14.06 8.31 -92.71 -0.77 13.28 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 2.54 7.02 -2.39 -0.02 2.52 16 30 H 0.07 2.27 7.02 -2.38 -0.02 2.25 16 31 H 0.42 11.18 8.64 -96.75 -0.84 10.34 16 32 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.09 1.94 7.75 -2.39 -0.02 1.92 16 34 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.24 1.72 8.06 -2.91 -0.02 1.69 16 36 H 0.23 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -70.38 318.20 0.14 -70.24 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.26 Total: 17.15 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 4.97 Total: -17.83 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -2.53 Total: -125.72 kcal Atomic # 8 Polarization: -91.44 SS G_CDS: -4.24 Total: -95.68 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 106.95 SS G_CDS: -0.35 Total: 106.60 kcal Total: -70.38 0.14 -70.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282939966.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.269 kcal (2) G-P(sol) polarization free energy of solvation -70.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds