Wall clock time and date at job start Tue Mar 31 2020 04:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.55497 * 2 1 4 4 O 1.42959 * 109.51350 * 120.12589 * 2 1 3 5 5 C 1.42957 * 114.16809 * 182.50703 * 4 2 1 6 6 C 1.53295 * 109.22265 * 297.41883 * 5 4 2 7 7 N 1.47148 * 108.38487 * 52.30105 * 6 5 4 8 8 C 1.34779 * 120.98137 * 129.44309 * 7 6 5 9 9 O 1.21277 * 120.00318 * 174.33035 * 8 7 6 10 10 C 1.50704 * 119.99985 * 354.33188 * 8 7 6 11 11 S 1.80996 * 109.47203 * 180.02562 * 10 8 7 12 12 C 1.76190 * 100.00144 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00200 * 359.97438 * 12 11 10 14 14 C 1.38801 * 120.00304 * 180.02562 * 12 11 10 15 15 N 1.31635 * 120.00346 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99754 * 359.72163 * 14 12 11 17 17 H 1.48494 * 109.47122 * 90.00072 * 16 14 12 18 18 H 1.48504 * 109.47327 * 210.00192 * 16 14 12 19 19 H 1.48503 * 109.46994 * 330.00015 * 16 14 12 20 20 C 1.47148 * 118.03664 * 309.71883 * 7 6 5 21 21 H 1.08998 * 109.68212 * 290.55954 * 20 7 6 22 22 C 1.50698 * 109.68110 * 170.00632 * 20 7 6 23 23 N 1.29037 * 119.99955 * 113.55204 * 22 20 7 24 24 O 1.34923 * 120.00462 * 293.54994 * 22 20 7 25 25 H 1.09000 * 109.47612 * 299.87831 * 1 2 3 26 26 H 1.09003 * 109.47014 * 59.87322 * 1 2 3 27 27 H 1.08997 * 109.47196 * 179.87398 * 1 2 3 28 28 H 1.09002 * 109.51291 * 177.49261 * 5 4 2 29 29 H 1.09003 * 109.55646 * 57.36744 * 5 4 2 30 30 H 1.09004 * 109.67822 * 292.57908 * 6 5 4 31 31 H 1.09001 * 109.70945 * 172.04713 * 6 5 4 32 32 H 1.08995 * 109.46995 * 59.99530 * 10 8 7 33 33 H 1.09001 * 109.47236 * 299.99911 * 10 8 7 34 34 H 0.96994 * 119.99649 * 179.97438 * 15 14 12 35 35 H 0.97003 * 119.99954 * 180.02562 * 23 22 20 36 36 H 0.96695 * 114.00596 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 8 2.0075 -0.6763 1.1655 5 6 3.4312 -0.6854 1.2948 6 6 4.0406 -1.4457 0.1114 7 7 3.5012 -0.8762 -1.1335 8 6 4.3194 -0.5034 -2.1376 9 8 3.8531 -0.1326 -3.1939 10 6 5.8137 -0.5473 -1.9476 11 16 6.6313 0.0096 -3.4633 12 6 8.3173 -0.1379 -2.9735 13 1 8.5629 -0.4887 -1.9821 14 6 9.3299 0.1978 -3.8615 15 7 10.5896 0.0872 -3.4957 16 14 8.9053 0.7986 -5.5785 17 1 8.7660 2.2770 -5.5653 18 1 9.9866 0.4117 -6.5199 19 1 7.6256 0.1847 -6.0153 20 6 2.0424 -0.7200 -1.2475 21 1 1.5728 -1.7009 -1.3206 22 6 1.7133 0.0937 -2.4724 23 7 1.0887 -0.4521 -3.4609 24 8 2.0716 1.3930 -2.5357 25 1 -0.3634 0.5119 0.8910 26 1 -0.3633 0.5158 -0.8889 27 1 -0.3633 -1.0276 -0.0023 28 1 3.7090 -1.1785 2.2264 29 1 3.8036 0.3390 1.3000 30 1 3.7756 -2.5010 0.1774 31 1 5.1252 -1.3381 0.1247 32 1 6.1215 -1.5683 -1.7224 33 1 6.0945 0.1072 -1.1223 34 1 11.2971 0.3214 -4.1164 35 1 0.8772 0.0716 -4.2496 36 1 1.8174 1.8315 -3.3592 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330575823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:36 Heat of formation + Delta-G solvation = -90.495817 kcal Electronic energy + Delta-G solvation = -21592.074134 eV Core-core repulsion = 18203.801883 eV Total energy + Delta-G solvation = -3388.272251 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -40.93194 -38.53259 -38.31947 -34.92677 -33.88726 -32.49406 -32.30393 -29.91299 -29.02389 -26.70018 -25.64068 -23.89278 -21.97159 -21.45761 -19.58623 -18.09082 -17.67046 -16.99727 -16.81053 -16.13206 -15.71070 -15.63872 -15.03731 -14.95339 -14.57763 -14.12352 -13.91983 -13.66191 -13.54130 -12.95706 -12.86386 -12.68535 -12.42743 -12.12020 -12.04782 -11.48603 -11.32028 -11.09988 -11.06278 -10.67975 -10.39479 -10.08181 -9.89455 -9.72195 -9.12041 -9.05885 -8.70653 -8.57297 -6.98884 -6.34347 -4.06786 2.15669 2.69123 2.75087 3.08822 3.22919 3.27919 3.45031 3.50450 3.57551 4.20659 4.27208 4.44207 4.66417 4.69541 4.71589 4.88135 4.91473 5.04794 5.06629 5.11028 5.32544 5.42940 5.50095 5.54955 5.62508 5.69647 5.85096 5.87248 6.08718 6.25231 6.78426 6.87820 7.19996 7.88600 8.21119 8.35740 8.42917 9.11663 10.74870 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.004799 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.926290 B = 5832.881551 C = 6641.947485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 H 0.076 0.924 4 O -0.372 6.372 5 C 0.045 3.955 6 C 0.073 3.927 7 N -0.620 5.620 8 C 0.539 3.461 9 O -0.496 6.496 10 C -0.119 4.119 11 S -0.139 6.139 12 C -0.522 4.522 13 H 0.089 0.911 14 C 0.097 3.903 15 N -0.879 5.879 16 Si 0.856 3.144 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.236 1.236 20 C 0.190 3.810 21 H 0.115 0.885 22 C 0.396 3.604 23 N -0.747 5.747 24 O -0.522 6.522 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.271 0.729 35 H 0.339 0.661 36 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.339 -0.373 9.432 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.021 3.979 3 H 0.094 0.906 4 O -0.290 6.290 5 C -0.033 4.033 6 C -0.050 4.050 7 N -0.358 5.358 8 C 0.327 3.673 9 O -0.368 6.368 10 C -0.269 4.269 11 S 0.087 5.913 12 C -0.670 4.670 13 H 0.107 0.893 14 C -0.112 4.112 15 N -0.515 5.515 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.160 1.160 20 C 0.086 3.914 21 H 0.133 0.867 22 C 0.167 3.833 23 N -0.396 5.396 24 O -0.316 6.316 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.156 0.844 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.935 -0.778 8.436 20.744 hybrid contribution 1.031 1.067 -0.612 1.605 sum -17.903 0.289 7.824 19.541 Atomic orbital electron populations 1.21736 0.91670 1.03586 1.02917 1.22392 0.95917 0.95839 0.83707 0.90622 1.87980 1.21131 1.77439 1.42447 1.23059 0.80995 1.00791 0.98416 1.22545 1.00731 0.98542 0.83150 1.48282 1.04602 1.65347 1.17604 1.20382 0.88623 0.75586 0.82670 1.90593 1.75041 1.45761 1.25418 1.23278 0.92401 1.05744 1.05514 1.84794 1.04070 1.87047 1.15360 1.22291 0.88315 1.52014 1.04376 0.89325 1.24694 0.94026 0.93835 0.98609 1.69933 0.98789 1.46286 1.36515 0.86747 0.80472 0.80561 0.84117 1.19219 1.19840 1.16041 1.20428 0.82163 0.98668 0.90170 0.86740 1.23304 0.86135 0.80676 0.93190 1.69405 1.24864 1.41051 1.04325 1.84751 1.78275 1.23955 1.44601 0.90973 0.90983 0.91128 0.87018 0.92043 0.89901 0.87666 0.88306 0.88316 0.91873 0.84369 0.74992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.41 37.16 0.35 -0.88 16 2 C 0.08 0.87 2.79 -26.79 -0.07 0.79 16 3 H 0.08 0.88 7.76 -51.92 -0.40 0.48 16 4 O -0.37 -3.90 10.38 -35.23 -0.37 -4.26 16 5 C 0.04 0.39 6.98 37.31 0.26 0.66 16 6 C 0.07 0.74 6.56 -3.54 -0.02 0.72 16 7 N -0.62 -8.61 3.03 -166.31 -0.50 -9.11 16 8 C 0.54 9.64 7.47 -10.98 -0.08 9.56 16 9 O -0.50 -10.23 12.07 -17.23 -0.21 -10.43 16 10 C -0.12 -2.26 4.53 36.01 0.16 -2.09 16 11 S -0.14 -3.46 18.55 -107.50 -1.99 -5.46 16 12 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 13 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 14 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 15 N -0.88 -26.19 13.97 55.49 0.78 -25.42 16 16 Si 0.86 21.56 27.73 -169.99 -4.71 16.85 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 20 C 0.19 2.46 2.96 -68.79 -0.20 2.26 16 21 H 0.11 1.46 8.11 -51.93 -0.42 1.04 16 22 C 0.40 5.60 3.52 -13.45 -0.05 5.56 16 23 N -0.75 -10.95 13.90 32.47 0.45 -10.50 16 24 O -0.52 -7.15 11.78 -39.27 -0.46 -7.61 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.62 7.51 -51.93 -0.39 0.23 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.11 1.01 6.04 -51.93 -0.31 0.70 16 32 H 0.10 1.74 7.79 -51.92 -0.40 1.33 16 33 H 0.10 1.73 7.89 -51.91 -0.41 1.32 16 34 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.34 4.41 8.56 -40.82 -0.35 4.07 16 36 H 0.40 4.12 8.70 45.56 0.40 4.52 16 LS Contribution 311.53 15.07 4.69 4.69 Total: -1.00 -34.69 311.53 -5.76 -40.45 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.98 Total: 5.99 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 0.56 Total: 4.81 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.72 Total: -45.03 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -1.04 Total: -22.31 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.85 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.69 -5.76 -40.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330575823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.048 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds