Wall clock time and date at job start Tue Mar 31 2020 04:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.55497 * 2 1 4 4 O 1.42959 * 109.51350 * 120.12589 * 2 1 3 5 5 C 1.42957 * 114.16809 * 182.50703 * 4 2 1 6 6 C 1.53295 * 109.22265 * 297.41883 * 5 4 2 7 7 N 1.47148 * 108.38487 * 52.30105 * 6 5 4 8 8 C 1.34779 * 120.98137 * 129.44309 * 7 6 5 9 9 O 1.21277 * 120.00318 * 174.33035 * 8 7 6 10 10 C 1.50704 * 119.99985 * 354.33188 * 8 7 6 11 11 S 1.80996 * 109.47203 * 180.02562 * 10 8 7 12 12 C 1.76190 * 100.00144 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00200 * 359.97438 * 12 11 10 14 14 C 1.38801 * 120.00304 * 180.02562 * 12 11 10 15 15 N 1.31635 * 120.00346 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99754 * 359.72163 * 14 12 11 17 17 H 1.48494 * 109.47122 * 90.00072 * 16 14 12 18 18 H 1.48504 * 109.47327 * 210.00192 * 16 14 12 19 19 H 1.48503 * 109.46994 * 330.00015 * 16 14 12 20 20 C 1.47148 * 118.03664 * 309.71883 * 7 6 5 21 21 H 1.08998 * 109.68212 * 290.55954 * 20 7 6 22 22 C 1.50698 * 109.68110 * 170.00632 * 20 7 6 23 23 N 1.29037 * 119.99955 * 113.55204 * 22 20 7 24 24 O 1.34923 * 120.00462 * 293.54994 * 22 20 7 25 25 H 1.09000 * 109.47612 * 299.87831 * 1 2 3 26 26 H 1.09003 * 109.47014 * 59.87322 * 1 2 3 27 27 H 1.08997 * 109.47196 * 179.87398 * 1 2 3 28 28 H 1.09002 * 109.51291 * 177.49261 * 5 4 2 29 29 H 1.09003 * 109.55646 * 57.36744 * 5 4 2 30 30 H 1.09004 * 109.67822 * 292.57908 * 6 5 4 31 31 H 1.09001 * 109.70945 * 172.04713 * 6 5 4 32 32 H 1.08995 * 109.46995 * 59.99530 * 10 8 7 33 33 H 1.09001 * 109.47236 * 299.99911 * 10 8 7 34 34 H 0.96994 * 119.99649 * 179.97438 * 15 14 12 35 35 H 0.97003 * 119.99954 * 180.02562 * 23 22 20 36 36 H 0.96695 * 114.00596 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 8 2.0075 -0.6763 1.1655 5 6 3.4312 -0.6854 1.2948 6 6 4.0406 -1.4457 0.1114 7 7 3.5012 -0.8762 -1.1335 8 6 4.3194 -0.5034 -2.1376 9 8 3.8531 -0.1326 -3.1939 10 6 5.8137 -0.5473 -1.9476 11 16 6.6313 0.0096 -3.4633 12 6 8.3173 -0.1379 -2.9735 13 1 8.5629 -0.4887 -1.9821 14 6 9.3299 0.1978 -3.8615 15 7 10.5896 0.0872 -3.4957 16 14 8.9053 0.7986 -5.5785 17 1 8.7660 2.2770 -5.5653 18 1 9.9866 0.4117 -6.5199 19 1 7.6256 0.1847 -6.0153 20 6 2.0424 -0.7200 -1.2475 21 1 1.5728 -1.7009 -1.3206 22 6 1.7133 0.0937 -2.4724 23 7 1.0887 -0.4521 -3.4609 24 8 2.0716 1.3930 -2.5357 25 1 -0.3634 0.5119 0.8910 26 1 -0.3633 0.5158 -0.8889 27 1 -0.3633 -1.0276 -0.0023 28 1 3.7090 -1.1785 2.2264 29 1 3.8036 0.3390 1.3000 30 1 3.7756 -2.5010 0.1774 31 1 5.1252 -1.3381 0.1247 32 1 6.1215 -1.5683 -1.7224 33 1 6.0945 0.1072 -1.1223 34 1 11.2971 0.3214 -4.1164 35 1 0.8772 0.0716 -4.2496 36 1 1.8174 1.8315 -3.3592 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330575823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:36 Heat of formation + Delta-G solvation = -119.800634 kcal Electronic energy + Delta-G solvation = -21593.344886 eV Core-core repulsion = 18203.801883 eV Total energy + Delta-G solvation = -3389.543003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.01605 -39.55085 -39.47429 -36.03253 -34.82402 -34.69091 -33.28670 -31.30590 -29.85623 -28.01767 -27.59214 -24.77549 -22.88476 -22.50222 -20.86526 -19.72495 -19.00656 -18.12827 -17.93862 -17.20081 -17.06431 -16.87387 -16.64621 -16.00001 -15.81122 -15.33947 -15.20433 -15.03318 -14.85921 -14.65716 -13.79115 -13.60026 -13.53341 -13.35861 -13.17548 -13.04508 -12.86639 -12.62284 -12.25253 -11.98258 -11.89551 -11.29520 -11.25568 -11.19210 -10.82881 -10.56122 -10.34327 -9.76151 -9.02589 -8.53605 -6.24500 0.85705 1.16418 1.28344 1.38717 1.44537 1.53998 1.97695 2.21954 2.32926 2.62464 2.74351 2.84922 3.29771 3.43209 3.76238 3.84052 3.92472 4.06970 4.10959 4.16355 4.31983 4.37329 4.53586 4.69462 4.81219 4.84826 4.93360 5.02534 5.20448 5.22313 5.68882 5.89392 6.00465 6.04426 6.09908 6.87989 6.91858 7.39594 8.58770 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.004799 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.926290 B = 5832.881551 C = 6641.947485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.089 3.911 3 H 0.066 0.934 4 O -0.374 6.374 5 C 0.045 3.955 6 C 0.064 3.936 7 N -0.611 5.611 8 C 0.537 3.463 9 O -0.531 6.531 10 C -0.104 4.104 11 S -0.171 6.171 12 C -0.529 4.529 13 H 0.065 0.935 14 C 0.049 3.951 15 N -0.915 5.915 16 Si 0.912 3.088 17 H -0.262 1.262 18 H -0.259 1.259 19 H -0.239 1.239 20 C 0.185 3.815 21 H 0.118 0.882 22 C 0.394 3.606 23 N -0.763 5.763 24 O -0.529 6.529 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.144 0.856 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.277 0.723 35 H 0.343 0.657 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.674 -0.587 10.362 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.029 3.971 3 H 0.084 0.916 4 O -0.293 6.293 5 C -0.032 4.032 6 C -0.057 4.057 7 N -0.348 5.348 8 C 0.325 3.675 9 O -0.406 6.406 10 C -0.254 4.254 11 S 0.056 5.944 12 C -0.676 4.676 13 H 0.083 0.917 14 C -0.157 4.157 15 N -0.553 5.553 16 Si 0.734 3.266 17 H -0.187 1.187 18 H -0.184 1.184 19 H -0.163 1.163 20 C 0.081 3.919 21 H 0.136 0.864 22 C 0.166 3.834 23 N -0.413 5.413 24 O -0.325 6.325 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.162 0.838 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.087 0.913 35 H 0.161 0.839 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -20.286 -1.001 9.406 22.383 hybrid contribution 1.376 1.084 -0.753 1.907 sum -18.909 0.083 8.653 20.795 Atomic orbital electron populations 1.21733 0.90110 1.04145 1.03535 1.22340 0.97063 0.94899 0.82794 0.91563 1.87992 1.22064 1.77254 1.41955 1.23231 0.80046 1.00877 0.99032 1.22899 1.01206 0.99679 0.81921 1.48268 1.04871 1.63938 1.17703 1.20123 0.88257 0.75987 0.83161 1.90582 1.75494 1.47635 1.26922 1.23234 0.93102 1.06659 1.02439 1.84707 1.02305 1.87738 1.19679 1.22445 0.90463 1.51265 1.03440 0.91696 1.25505 0.93983 0.94085 1.02120 1.70008 0.99757 1.47511 1.38053 0.85903 0.80358 0.80171 0.80130 1.18699 1.18371 1.16331 1.20690 0.81291 0.99046 0.90911 0.86414 1.23518 0.85652 0.80859 0.93401 1.69418 1.25518 1.41533 1.04842 1.84722 1.78310 1.23948 1.45531 0.89610 0.91119 0.90595 0.83799 0.92323 0.88010 0.87088 0.86753 0.86767 0.91343 0.83859 0.73694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.41 71.98 0.68 -1.41 16 2 C 0.09 1.72 2.79 30.55 0.09 1.81 16 3 H 0.07 1.43 7.76 -2.38 -0.02 1.41 16 4 O -0.37 -6.76 10.38 -148.98 -1.55 -8.30 16 5 C 0.05 0.65 6.98 72.08 0.50 1.16 16 6 C 0.06 1.13 6.56 86.35 0.57 1.69 16 7 N -0.61 -15.80 3.03 -798.46 -2.42 -18.22 16 8 C 0.54 18.52 7.47 87.66 0.65 19.17 16 9 O -0.53 -21.53 12.07 18.77 0.23 -21.31 16 10 C -0.10 -3.81 4.53 71.24 0.32 -3.49 16 11 S -0.17 -8.44 18.55 -56.49 -1.05 -9.49 16 12 C -0.53 -30.13 10.04 67.95 0.68 -29.44 16 13 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 14 C 0.05 2.82 5.50 84.86 0.47 3.28 16 15 N -0.92 -54.97 13.97 21.65 0.30 -54.66 16 16 Si 0.91 44.47 27.73 68.60 1.90 46.37 16 17 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 20 C 0.18 4.47 2.96 44.08 0.13 4.60 16 21 H 0.12 2.79 8.11 -2.39 -0.02 2.77 16 22 C 0.39 10.78 3.52 88.52 0.31 11.09 16 23 N -0.76 -21.81 13.90 -166.06 -2.31 -24.12 16 24 O -0.53 -14.12 11.78 -60.13 -0.71 -14.83 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.09 7.51 -2.39 -0.02 1.08 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.11 1.83 6.04 -2.39 -0.01 1.81 16 32 H 0.11 3.85 7.79 -2.40 -0.02 3.83 16 33 H 0.11 3.84 7.89 -2.40 -0.02 3.82 16 34 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.34 8.81 8.56 -92.71 -0.79 8.02 16 36 H 0.41 8.31 8.70 -74.06 -0.64 7.67 16 Total: -1.00 -74.01 311.53 -1.55 -75.56 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.35 Total: 20.53 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 4.40 Total: 8.46 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -4.42 Total: -97.00 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -2.03 Total: -44.44 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.37 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.05 Total: -9.49 kcal Total: -74.01 -1.55 -75.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330575823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.241 kcal (2) G-P(sol) polarization free energy of solvation -74.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds