Wall clock time and date at job start Tue Mar 31 2020 03:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39745 * 120.05117 * 27.37927 * 3 2 1 5 5 C 1.37607 * 120.06167 * 179.97438 * 4 3 2 6 6 C 1.39732 * 120.14939 * 0.02562 * 5 4 3 7 7 C 1.47947 * 119.94901 * 179.97438 * 6 5 4 8 8 O 1.21539 * 119.99526 * 173.06232 * 7 6 5 9 9 N 1.34773 * 120.00105 * 353.06136 * 7 6 5 10 10 C 1.47582 * 134.49220 * 174.43374 * 9 7 6 11 11 C 1.53948 * 86.11699 * 155.35455 * 10 9 7 12 12 O 1.42897 * 113.74650 * 269.15326 * 11 10 9 13 13 C 1.50699 * 113.73851 * 137.95181 * 11 10 9 14 14 H 1.08003 * 119.99936 * 1.92651 * 13 11 10 15 15 C 1.37874 * 120.00330 * 181.93024 * 13 11 10 16 16 N 1.31516 * 119.99526 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00428 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47162 * 269.99845 * 17 15 13 19 19 H 1.48500 * 109.47306 * 29.99704 * 17 15 13 20 20 H 1.48499 * 109.47466 * 149.99828 * 17 15 13 21 21 C 1.47811 * 134.45775 * 354.30370 * 9 7 6 22 22 C 1.39402 * 120.09279 * 0.25673 * 6 5 4 23 23 C 1.38449 * 119.94068 * 359.46503 * 22 6 5 24 24 O 1.35733 * 120.07800 * 180.27967 * 23 22 6 25 25 H 1.08006 * 119.96647 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.92282 * 180.02562 * 5 4 3 27 27 H 1.09009 * 113.76516 * 41.06037 * 10 9 7 28 28 H 1.08990 * 113.87168 * 269.67198 * 10 9 7 29 29 H 0.96696 * 113.99744 * 178.07480 * 12 11 10 30 30 H 0.97001 * 119.99983 * 179.97438 * 16 15 13 31 31 H 1.08994 * 113.77136 * 90.37564 * 21 9 7 32 32 H 1.09006 * 113.83182 * 318.91180 * 21 9 7 33 33 H 1.08003 * 120.02706 * 179.74732 * 22 6 5 34 34 H 0.96699 * 113.99571 * 270.26133 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 -1.0731 -0.5563 5 6 4.6444 -1.0725 -0.5569 6 6 5.3459 0.0006 -0.0013 7 6 6.8254 -0.0035 -0.0038 8 8 7.4364 0.9811 0.3628 9 7 7.4955 -1.0991 -0.4125 10 6 8.9188 -1.4158 -0.6404 11 6 8.5229 -2.8836 -0.3980 12 8 8.6306 -3.2906 0.9676 13 6 9.1715 -3.8526 -1.3527 14 1 9.8677 -3.4937 -2.0963 15 6 8.8762 -5.1972 -1.2769 16 7 8.0287 -5.6342 -0.3711 17 14 9.6807 -6.3983 -2.4598 18 1 8.8383 -6.5356 -3.6751 19 1 11.0232 -5.8919 -2.8427 20 1 9.8203 -7.7224 -1.8022 21 6 7.0994 -2.4665 -0.8101 22 6 4.6538 1.0723 0.5606 23 6 3.2693 1.0783 0.5581 24 8 2.5926 2.1230 1.0993 25 1 2.7289 -1.9039 -0.9869 26 1 5.1833 -1.9034 -0.9877 27 1 9.5864 -1.0096 0.1196 28 1 9.2583 -1.2144 -1.6564 29 1 8.3548 -4.2033 1.1288 30 1 7.8206 -6.5801 -0.3181 31 1 6.9015 -2.5740 -1.8766 32 1 6.3171 -2.8977 -0.1854 33 1 5.1971 1.8993 0.9934 34 1 2.3968 2.0195 2.0406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331875018.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:58 Heat of formation + Delta-G solvation = -44.462780 kcal Electronic energy + Delta-G solvation = -21866.641638 eV Core-core repulsion = 18344.921578 eV Total energy + Delta-G solvation = -3521.720060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.71779 -40.66063 -39.05417 -37.82841 -37.44121 -35.81319 -34.09829 -32.80931 -31.41112 -30.14724 -27.43300 -27.14349 -25.44220 -23.73684 -22.04918 -20.68147 -20.11396 -19.50384 -18.99107 -17.74069 -17.55213 -16.95945 -16.70736 -16.43123 -16.02713 -15.80132 -15.37368 -15.10492 -14.79305 -14.74385 -14.44603 -14.09125 -14.02988 -13.80381 -13.55827 -13.37174 -13.13742 -12.93073 -12.74349 -12.59282 -12.21396 -12.14780 -11.94419 -11.38817 -10.99607 -10.60747 -10.26406 -10.15998 -9.90810 -9.55370 -8.22256 -6.38023 -0.79779 0.08641 1.33150 1.49863 1.50314 1.55714 1.62799 1.83595 2.11945 2.44946 2.62055 2.67502 2.95842 3.01873 3.35407 3.69609 3.80867 3.99870 4.12658 4.20500 4.29134 4.50970 4.63998 4.71798 4.77504 4.84680 4.92311 5.00190 5.05117 5.17343 5.28782 5.46339 5.78006 5.98097 6.31120 6.62470 6.67499 6.77504 7.04741 7.35511 7.50114 8.83517 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.004117 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.548233 B = 6800.193318 C = 7700.275634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.283 3.717 3 C -0.039 4.039 4 C -0.042 4.042 5 C -0.106 4.106 6 C -0.086 4.086 7 C 0.560 3.440 8 O -0.589 6.589 9 N -0.624 5.624 10 C 0.111 3.889 11 C 0.218 3.782 12 O -0.586 6.586 13 C -0.555 4.555 14 H 0.071 0.929 15 C 0.039 3.961 16 N -0.913 5.913 17 Si 0.962 3.038 18 H -0.271 1.271 19 H -0.274 1.274 20 H -0.287 1.287 21 C 0.085 3.915 22 C -0.095 4.095 23 C 0.162 3.838 24 O -0.496 6.496 25 H 0.173 0.827 26 H 0.157 0.843 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.388 0.612 30 H 0.275 0.725 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 5.164 -0.453 9.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.032 4.032 3 C -0.043 4.043 4 C -0.062 4.062 5 C -0.124 4.124 6 C -0.090 4.090 7 C 0.352 3.648 8 O -0.472 6.472 9 N -0.356 5.356 10 C -0.011 4.011 11 C 0.177 3.823 12 O -0.398 6.398 13 C -0.593 4.593 14 H 0.090 0.910 15 C -0.162 4.162 16 N -0.553 5.553 17 Si 0.788 3.212 18 H -0.196 1.196 19 H -0.199 1.199 20 H -0.213 1.213 21 C -0.037 4.037 22 C -0.115 4.115 23 C 0.114 3.886 24 O -0.311 6.311 25 H 0.191 0.809 26 H 0.174 0.826 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.242 0.758 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.165 0.835 34 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -9.693 6.505 -0.594 11.688 hybrid contribution 0.794 -1.268 0.061 1.497 sum -8.899 5.237 -0.533 10.339 Atomic orbital electron populations 1.81264 1.12801 1.08772 1.09208 1.25386 0.92209 0.92603 0.93041 1.16545 0.84222 0.96889 1.06630 1.21297 0.93008 0.96710 0.95230 1.21978 0.94583 0.97920 0.97935 1.19938 0.91676 0.96572 1.00798 1.18388 0.87798 0.81094 0.77569 1.90702 1.70647 1.34744 1.51105 1.50111 1.10374 1.12034 1.63089 1.23535 0.82328 0.93957 1.01251 1.20130 0.91113 0.90020 0.81072 1.86064 1.89773 1.36531 1.27446 1.21710 1.27807 0.92689 1.17120 0.91038 1.25622 0.94352 0.99546 0.96670 1.69444 1.34354 1.16551 1.34949 0.85489 0.78976 0.77799 0.78951 1.19605 1.19891 1.21270 1.24395 1.01552 0.76852 1.00868 1.21394 0.92826 0.98201 0.99031 1.18015 0.88670 0.85897 0.95993 1.84745 1.75628 1.39297 1.31409 0.80940 0.82565 0.92171 0.87376 0.75771 0.91484 0.87697 0.89795 0.83534 0.71969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.39 18.54 19.00 0.35 -11.04 16 2 C 0.28 6.06 14.85 88.33 1.31 7.37 16 3 C -0.04 -0.74 5.75 -21.20 -0.12 -0.86 16 4 C -0.04 -0.75 9.73 22.48 0.22 -0.54 16 5 C -0.11 -2.43 9.06 22.48 0.20 -2.23 16 6 C -0.09 -2.42 5.87 -20.06 -0.12 -2.54 16 7 C 0.56 20.69 7.99 86.82 0.69 21.38 16 8 O -0.59 -25.36 17.08 -3.84 -0.07 -25.42 16 9 N -0.62 -23.39 3.60 -842.90 -3.03 -26.42 16 10 C 0.11 4.42 8.23 86.49 0.71 5.13 16 11 C 0.22 9.43 1.40 -10.88 -0.02 9.42 16 12 O -0.59 -28.17 13.49 -148.98 -2.01 -30.17 16 13 C -0.56 -25.36 8.61 25.60 0.22 -25.14 16 14 H 0.07 3.19 7.81 -2.91 -0.02 3.17 16 15 C 0.04 1.78 5.39 84.65 0.46 2.24 16 16 N -0.91 -42.20 11.20 21.45 0.24 -41.96 16 17 Si 0.96 36.76 29.54 68.60 2.03 38.78 16 18 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 19 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 20 H -0.29 -11.05 7.11 99.48 0.71 -10.34 16 21 C 0.09 3.06 5.60 86.44 0.48 3.55 16 22 C -0.10 -2.31 9.52 22.60 0.22 -2.10 16 23 C 0.16 3.24 6.70 22.79 0.15 3.40 16 24 O -0.50 -8.51 12.92 -90.56 -1.17 -9.68 16 25 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 26 H 0.16 3.67 4.06 -2.91 -0.01 3.66 16 27 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 28 H 0.11 3.83 8.09 -2.39 -0.02 3.81 16 29 H 0.39 18.83 6.60 -74.06 -0.49 18.34 16 30 H 0.28 12.16 8.31 -92.71 -0.77 11.39 16 31 H 0.11 3.43 7.99 -2.39 -0.02 3.41 16 32 H 0.08 2.92 6.90 -2.38 -0.02 2.91 16 33 H 0.15 3.69 7.65 -2.91 -0.02 3.67 16 34 H 0.42 3.17 9.06 -74.06 -0.67 2.50 16 Total: -1.00 -59.67 309.05 0.79 -58.88 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.04 Total: 27.95 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 4.41 Total: 19.08 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -2.44 Total: -79.42 kcal Atomic # 8 Polarization: -62.03 SS G_CDS: -3.24 Total: -65.28 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.78 kcal Total: -59.67 0.79 -58.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331875018.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.419 kcal (2) G-P(sol) polarization free energy of solvation -59.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds