Wall clock time and date at job start Tue Mar 31 2020 04:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36617 * 120.00262 * 2 1 4 4 H 1.07991 * 120.00171 * 197.64866 * 3 2 1 5 5 C 1.39252 * 119.99481 * 17.92791 * 3 2 1 6 6 N 1.31236 * 120.00140 * 17.21913 * 5 3 2 7 7 Si 1.86793 * 119.99958 * 197.21817 * 5 3 2 8 8 H 1.48500 * 109.46993 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46985 * 119.99827 * 7 5 3 10 10 H 1.48496 * 109.47424 * 239.99850 * 7 5 3 11 11 C 1.34781 * 120.00043 * 180.02562 * 2 1 3 12 12 O 1.21595 * 119.99944 * 185.66323 * 11 2 1 13 13 C 1.47788 * 120.00047 * 5.66199 * 11 2 1 14 14 C 1.39609 * 119.92768 * 141.31517 * 13 11 2 15 15 C 1.38331 * 120.31107 * 180.02562 * 14 13 11 16 16 C 1.38698 * 119.90765 * 359.97438 * 15 14 13 17 17 C 1.41093 * 120.06185 * 0.02562 * 16 15 14 18 18 C 1.38348 * 119.96279 * 359.74507 * 17 16 15 19 19 C 1.47814 * 105.87060 * 179.97438 * 17 16 15 20 20 O 1.21446 * 125.69974 * 179.97438 * 19 17 16 21 21 N 1.34507 * 108.59765 * 359.97438 * 19 17 16 22 22 C 1.46502 * 124.43709 * 179.97438 * 21 19 17 23 23 C 1.34507 * 111.12153 * 0.02562 * 21 19 17 24 24 O 1.21451 * 125.71038 * 180.02562 * 23 21 19 25 25 H 1.09000 * 109.47656 * 25.11469 * 1 2 3 26 26 H 1.09004 * 109.47142 * 145.11659 * 1 2 3 27 27 H 1.09000 * 109.47158 * 265.11430 * 1 2 3 28 28 H 0.96997 * 120.00006 * 180.02562 * 6 5 3 29 29 H 1.08008 * 119.84758 * 0.02562 * 14 13 11 30 30 H 1.08000 * 120.05254 * 180.02562 * 15 14 13 31 31 H 1.08000 * 120.19335 * 180.27204 * 18 17 16 32 32 H 1.08999 * 109.46803 * 90.00450 * 22 21 19 33 33 H 1.09002 * 109.46963 * 210.00248 * 22 21 19 34 34 H 1.08994 * 109.47479 * 330.00373 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1481 1.1831 0.0000 4 1 3.1899 1.2051 -0.2835 5 6 1.5025 2.3598 0.3712 6 7 0.3706 2.3064 1.0333 7 14 2.2475 4.0140 -0.0732 8 1 3.5165 3.8022 -0.8148 9 1 1.2969 4.7719 -0.9260 10 1 2.5210 4.7831 1.1673 11 6 2.1389 -1.1672 -0.0005 12 8 3.3504 -1.1698 0.1034 13 6 1.4053 -2.4439 -0.1274 14 6 1.9402 -3.4814 -0.8933 15 6 1.2601 -4.6795 -1.0179 16 6 0.0413 -4.8526 -0.3789 17 6 -0.5047 -3.8080 0.3966 18 6 0.1789 -2.6120 0.5241 19 6 -1.7866 -4.3227 0.9227 20 8 -2.5546 -3.7130 1.6392 21 7 -1.9603 -5.5793 0.4754 22 6 -3.1201 -6.4175 0.7893 23 6 -0.9291 -5.9657 -0.2969 24 8 -0.8144 -7.0474 -0.8371 25 1 -0.3634 0.9305 -0.4362 26 1 -0.3634 -0.8430 -0.5878 27 1 -0.3633 -0.0875 1.0239 28 1 -0.0792 3.1260 1.2916 29 1 2.8895 -3.3480 -1.3910 30 1 1.6780 -5.4795 -1.6111 31 1 -0.2335 -1.8116 1.1205 32 1 -3.8941 -6.2629 0.0376 33 1 -2.8207 -7.4656 0.7923 34 1 -3.5083 -6.1478 1.7714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337548173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:36 Heat of formation + Delta-G solvation = -26.206855 kcal Electronic energy + Delta-G solvation = -22205.824812 eV Core-core repulsion = 18684.896389 eV Total energy + Delta-G solvation = -3520.928424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.26296 -39.38773 -38.64630 -37.45655 -35.82851 -34.98585 -32.39302 -31.93142 -30.87638 -27.84509 -26.65973 -25.50422 -24.64382 -23.03321 -22.38573 -20.24587 -19.40812 -17.60029 -17.24463 -17.17882 -16.84336 -16.43202 -15.59190 -15.24598 -14.84754 -14.62490 -14.25909 -14.18047 -14.01699 -13.63425 -13.49508 -13.33655 -12.85186 -12.49046 -12.33375 -12.02209 -11.82578 -11.50694 -11.36504 -10.95592 -10.53677 -10.49084 -10.41260 -10.36705 -9.96716 -9.23688 -9.09606 -8.99290 -8.61773 -8.00670 -6.62346 -4.03327 0.01738 1.03338 1.94531 2.25452 2.88957 3.01581 3.13935 3.20334 3.42659 3.62665 3.91109 4.04119 4.31403 4.54468 4.66522 4.88103 4.92884 5.06168 5.18903 5.25755 5.31059 5.36065 5.40439 5.56043 5.83822 5.94392 6.10207 6.19916 6.42235 6.53923 6.60492 6.69417 7.00427 7.14277 7.31342 7.59763 7.83280 8.21817 8.92033 9.12195 9.71351 10.40485 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.027892 B = 0.004316 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.641390 B = 6486.162477 C = 7322.152680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.417 5.417 3 C -0.303 4.303 4 H 0.109 0.891 5 C 0.032 3.968 6 N -0.860 5.860 7 Si 0.930 3.070 8 H -0.264 1.264 9 H -0.277 1.277 10 H -0.278 1.278 11 C 0.456 3.544 12 O -0.585 6.585 13 C -0.061 4.061 14 C -0.063 4.063 15 C -0.045 4.045 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.030 4.030 19 C 0.578 3.422 20 O -0.463 6.463 21 N -0.583 5.583 22 C 0.081 3.919 23 C 0.580 3.420 24 O -0.474 6.474 25 H 0.086 0.914 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.274 0.726 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.155 0.845 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 -11.445 -2.643 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.131 5.131 3 C -0.431 4.431 4 H 0.126 0.874 5 C -0.174 4.174 6 N -0.497 5.497 7 Si 0.756 3.244 8 H -0.188 1.188 9 H -0.203 1.203 10 H -0.204 1.204 11 C 0.246 3.754 12 O -0.471 6.471 13 C -0.066 4.066 14 C -0.082 4.082 15 C -0.064 4.064 16 C -0.159 4.159 17 C -0.154 4.154 18 C -0.049 4.049 19 C 0.368 3.632 20 O -0.334 6.334 21 N -0.326 5.326 22 C -0.059 4.059 23 C 0.370 3.630 24 O -0.346 6.346 25 H 0.105 0.895 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.172 0.828 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.186 -11.541 -2.378 13.308 hybrid contribution -0.070 0.779 -0.013 0.782 sum -6.256 -10.761 -2.391 12.675 Atomic orbital electron populations 1.22018 0.80930 1.01270 1.00766 1.43570 1.05864 1.04926 1.58776 1.19889 0.97756 0.82620 1.42825 0.87361 1.25463 0.96375 1.00498 0.95024 1.69963 1.17154 1.29720 1.32891 0.85791 0.79407 0.80558 0.78630 1.18843 1.20296 1.20419 1.17675 0.87490 0.82571 0.87713 1.90649 1.13261 1.86080 1.57144 1.20614 0.93420 0.96679 0.95854 1.21494 0.99719 0.91046 0.95955 1.20635 0.91647 0.97359 0.96755 1.20451 0.97397 0.94712 1.03313 1.20301 0.96210 0.96218 1.02696 1.21438 0.92266 0.95287 0.95913 1.18403 0.85734 0.80416 0.78659 1.90809 1.48833 1.60910 1.32844 1.46399 1.22327 1.16214 1.47653 1.21864 0.86110 0.95070 1.02862 1.18421 0.81102 0.86676 0.76764 1.90775 1.76580 1.23317 1.43946 0.89546 0.94605 0.92194 0.91527 0.83518 0.84086 0.82756 0.90863 0.89371 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.96 7.19 59.84 0.43 2.39 16 2 N -0.42 -10.07 3.01 -123.31 -0.37 -10.44 16 3 C -0.30 -7.91 9.32 -15.04 -0.14 -8.05 16 4 H 0.11 2.95 7.40 -52.49 -0.39 2.56 16 5 C 0.03 0.80 4.98 -17.43 -0.09 0.71 16 6 N -0.86 -21.32 10.70 55.51 0.59 -20.72 16 7 Si 0.93 19.23 29.59 -169.99 -5.03 14.20 16 8 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 9 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 10 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 11 C 0.46 10.62 7.30 -12.35 -0.09 10.53 16 12 O -0.58 -15.53 16.57 5.28 0.09 -15.45 16 13 C -0.06 -1.13 5.27 -104.86 -0.55 -1.68 16 14 C -0.06 -0.95 9.61 -39.04 -0.38 -1.33 16 15 C -0.05 -0.59 10.08 -39.38 -0.40 -0.98 16 16 C -0.15 -2.17 6.41 -104.69 -0.67 -2.84 16 17 C -0.15 -2.29 6.39 -104.86 -0.67 -2.96 16 18 C -0.03 -0.50 7.57 -38.92 -0.29 -0.79 16 19 C 0.58 8.54 8.02 -12.46 -0.10 8.44 16 20 O -0.46 -7.76 17.68 5.41 0.10 -7.67 16 21 N -0.58 -7.42 3.02 -125.00 -0.38 -7.79 16 22 C 0.08 0.73 10.77 59.85 0.64 1.38 16 23 C 0.58 7.97 8.02 -12.42 -0.10 7.87 16 24 O -0.47 -7.16 17.68 5.41 0.10 -7.06 16 25 H 0.09 1.92 6.40 -51.93 -0.33 1.59 16 26 H 0.04 0.65 5.77 -51.93 -0.30 0.35 16 27 H 0.06 1.27 6.71 -51.93 -0.35 0.92 16 28 H 0.27 6.37 8.30 -40.82 -0.34 6.03 16 29 H 0.15 2.10 8.04 -52.48 -0.42 1.68 16 30 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.16 2.69 5.23 -52.49 -0.27 2.41 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.69 7.96 -51.93 -0.41 0.28 16 34 H 0.09 0.73 7.96 -51.93 -0.41 0.31 16 LS Contribution 300.46 15.07 4.53 4.53 Total: -1.00 -30.40 300.46 -5.65 -36.05 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -2.87 Total: 1.67 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: -2.40 Total: 12.68 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: -0.16 Total: -38.96 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: 0.28 Total: -30.17 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.40 -5.65 -36.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337548173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.847 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds