Wall clock time and date at job start Tue Mar 31 2020 04:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36617 * 120.00262 * 2 1 4 4 H 1.07991 * 120.00171 * 197.64866 * 3 2 1 5 5 C 1.39252 * 119.99481 * 17.92791 * 3 2 1 6 6 N 1.31236 * 120.00140 * 17.21913 * 5 3 2 7 7 Si 1.86793 * 119.99958 * 197.21817 * 5 3 2 8 8 H 1.48500 * 109.46993 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46985 * 119.99827 * 7 5 3 10 10 H 1.48496 * 109.47424 * 239.99850 * 7 5 3 11 11 C 1.34781 * 120.00043 * 180.02562 * 2 1 3 12 12 O 1.21595 * 119.99944 * 185.66323 * 11 2 1 13 13 C 1.47788 * 120.00047 * 5.66199 * 11 2 1 14 14 C 1.39609 * 119.92768 * 141.31517 * 13 11 2 15 15 C 1.38331 * 120.31107 * 180.02562 * 14 13 11 16 16 C 1.38698 * 119.90765 * 359.97438 * 15 14 13 17 17 C 1.41093 * 120.06185 * 0.02562 * 16 15 14 18 18 C 1.38348 * 119.96279 * 359.74507 * 17 16 15 19 19 C 1.47814 * 105.87060 * 179.97438 * 17 16 15 20 20 O 1.21446 * 125.69974 * 179.97438 * 19 17 16 21 21 N 1.34507 * 108.59765 * 359.97438 * 19 17 16 22 22 C 1.46502 * 124.43709 * 179.97438 * 21 19 17 23 23 C 1.34507 * 111.12153 * 0.02562 * 21 19 17 24 24 O 1.21451 * 125.71038 * 180.02562 * 23 21 19 25 25 H 1.09000 * 109.47656 * 25.11469 * 1 2 3 26 26 H 1.09004 * 109.47142 * 145.11659 * 1 2 3 27 27 H 1.09000 * 109.47158 * 265.11430 * 1 2 3 28 28 H 0.96997 * 120.00006 * 180.02562 * 6 5 3 29 29 H 1.08008 * 119.84758 * 0.02562 * 14 13 11 30 30 H 1.08000 * 120.05254 * 180.02562 * 15 14 13 31 31 H 1.08000 * 120.19335 * 180.27204 * 18 17 16 32 32 H 1.08999 * 109.46803 * 90.00450 * 22 21 19 33 33 H 1.09002 * 109.46963 * 210.00248 * 22 21 19 34 34 H 1.08994 * 109.47479 * 330.00373 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1481 1.1831 0.0000 4 1 3.1899 1.2051 -0.2835 5 6 1.5025 2.3598 0.3712 6 7 0.3706 2.3064 1.0333 7 14 2.2475 4.0140 -0.0732 8 1 3.5165 3.8022 -0.8148 9 1 1.2969 4.7719 -0.9260 10 1 2.5210 4.7831 1.1673 11 6 2.1389 -1.1672 -0.0005 12 8 3.3504 -1.1698 0.1034 13 6 1.4053 -2.4439 -0.1274 14 6 1.9402 -3.4814 -0.8933 15 6 1.2601 -4.6795 -1.0179 16 6 0.0413 -4.8526 -0.3789 17 6 -0.5047 -3.8080 0.3966 18 6 0.1789 -2.6120 0.5241 19 6 -1.7866 -4.3227 0.9227 20 8 -2.5546 -3.7130 1.6392 21 7 -1.9603 -5.5793 0.4754 22 6 -3.1201 -6.4175 0.7893 23 6 -0.9291 -5.9657 -0.2969 24 8 -0.8144 -7.0474 -0.8371 25 1 -0.3634 0.9305 -0.4362 26 1 -0.3634 -0.8430 -0.5878 27 1 -0.3633 -0.0875 1.0239 28 1 -0.0792 3.1260 1.2916 29 1 2.8895 -3.3480 -1.3910 30 1 1.6780 -5.4795 -1.6111 31 1 -0.2335 -1.8116 1.1205 32 1 -3.8941 -6.2629 0.0376 33 1 -2.8207 -7.4656 0.7923 34 1 -3.5083 -6.1478 1.7714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337548173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:34 Heat of formation + Delta-G solvation = -45.829012 kcal Electronic energy + Delta-G solvation = -22206.675693 eV Core-core repulsion = 18684.896389 eV Total energy + Delta-G solvation = -3521.779304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.42352 -40.98664 -39.84236 -38.91395 -37.00207 -36.84920 -34.05099 -33.19908 -32.28125 -28.90550 -28.39351 -27.00254 -26.08880 -24.30573 -23.65916 -21.64135 -20.73767 -19.11804 -18.89455 -18.33877 -18.00188 -17.90403 -17.04555 -16.67508 -16.28672 -16.08362 -15.91802 -15.53516 -15.22139 -15.09232 -14.80885 -14.41385 -13.95229 -13.81175 -13.55809 -13.53452 -13.44979 -13.21889 -12.86966 -12.55503 -12.38348 -12.11195 -11.68582 -11.58504 -11.05715 -11.00655 -10.63858 -10.32052 -10.18644 -9.87155 -8.46871 -6.01129 -1.20312 -0.22052 0.70261 1.21444 1.37065 1.43251 1.57081 1.75308 1.91938 2.21727 2.42358 2.53934 2.88383 3.05479 3.13745 3.45905 3.73649 3.92446 4.08100 4.13146 4.31848 4.36541 4.42357 4.46337 4.63191 4.72670 4.73035 4.88619 4.90358 5.14727 5.25828 5.38313 5.40880 5.48969 5.95696 5.98772 6.34950 6.48772 7.03773 7.29468 7.86767 8.55797 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.027892 B = 0.004316 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.641390 B = 6486.162477 C = 7322.152680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.435 5.435 3 C -0.348 4.348 4 H 0.083 0.917 5 C 0.003 3.997 6 N -0.882 5.882 7 Si 0.994 3.006 8 H -0.269 1.269 9 H -0.264 1.264 10 H -0.275 1.275 11 C 0.455 3.545 12 O -0.626 6.626 13 C -0.085 4.085 14 C -0.049 4.049 15 C -0.026 4.026 16 C -0.140 4.140 17 C -0.155 4.155 18 C -0.030 4.030 19 C 0.583 3.417 20 O -0.485 6.485 21 N -0.576 5.576 22 C 0.073 3.927 23 C 0.588 3.412 24 O -0.479 6.479 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.280 0.720 29 H 0.156 0.844 30 H 0.182 0.818 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.176 -13.524 -3.530 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.150 5.150 3 C -0.475 4.475 4 H 0.101 0.899 5 C -0.201 4.201 6 N -0.519 5.519 7 Si 0.816 3.184 8 H -0.194 1.194 9 H -0.188 1.188 10 H -0.200 1.200 11 C 0.245 3.755 12 O -0.515 6.515 13 C -0.089 4.089 14 C -0.068 4.068 15 C -0.044 4.044 16 C -0.144 4.144 17 C -0.159 4.159 18 C -0.050 4.050 19 C 0.373 3.627 20 O -0.358 6.358 21 N -0.318 5.318 22 C -0.066 4.066 23 C 0.378 3.622 24 O -0.351 6.351 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.174 0.826 30 H 0.199 0.801 31 H 0.160 0.840 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.244 -13.657 -3.266 15.800 hybrid contribution 0.200 1.152 0.264 1.198 sum -7.044 -12.505 -3.002 14.663 Atomic orbital electron populations 1.21906 0.79390 1.01540 1.00592 1.43745 1.06881 1.04836 1.59516 1.19802 0.97464 0.84374 1.45901 0.89912 1.26181 0.96711 1.03011 0.94186 1.70019 1.17921 1.30733 1.33183 0.84878 0.78590 0.76527 0.78389 1.19379 1.18843 1.20040 1.18418 0.87302 0.83952 0.85780 1.90595 1.15290 1.87214 1.58439 1.20224 0.94413 0.95271 0.98944 1.21655 0.99823 0.90686 0.94615 1.20942 0.90595 0.97098 0.95759 1.20714 0.97529 0.94319 1.01869 1.20294 0.96673 0.95890 1.03019 1.21177 0.91950 0.95885 0.95954 1.18306 0.85185 0.80945 0.78257 1.90808 1.49437 1.61609 1.33917 1.46437 1.22984 1.15642 1.46777 1.22207 0.85215 0.95230 1.03936 1.18226 0.81050 0.86214 0.76673 1.90793 1.76681 1.23466 1.44182 0.91099 0.91853 0.93004 0.91012 0.82592 0.80093 0.83955 0.89193 0.87804 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.70 7.19 127.77 0.92 5.61 16 2 N -0.43 -21.92 3.01 -662.30 -1.99 -23.91 16 3 C -0.35 -19.05 9.32 84.19 0.78 -18.26 16 4 H 0.08 4.82 7.40 -2.92 -0.02 4.80 16 5 C 0.00 0.16 4.98 85.03 0.42 0.58 16 6 N -0.88 -44.73 10.70 21.71 0.23 -44.50 16 7 Si 0.99 40.25 29.59 68.60 2.03 42.28 16 8 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 9 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 10 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 11 C 0.45 21.91 7.30 86.77 0.63 22.54 16 12 O -0.63 -34.63 16.57 -4.02 -0.07 -34.69 16 13 C -0.08 -3.09 5.27 -20.02 -0.11 -3.19 16 14 C -0.05 -1.38 9.61 22.62 0.22 -1.16 16 15 C -0.03 -0.57 10.08 22.40 0.23 -0.34 16 16 C -0.14 -3.47 6.41 -19.91 -0.13 -3.60 16 17 C -0.16 -4.43 6.39 -20.02 -0.13 -4.56 16 18 C -0.03 -1.00 7.57 22.70 0.17 -0.83 16 19 C 0.58 16.04 8.02 86.82 0.70 16.74 16 20 O -0.48 -15.64 17.68 -3.55 -0.06 -15.70 16 21 N -0.58 -12.88 3.02 -786.34 -2.38 -15.26 16 22 C 0.07 1.07 10.77 127.77 1.38 2.44 16 23 C 0.59 13.99 8.02 86.85 0.70 14.69 16 24 O -0.48 -12.47 17.68 -3.56 -0.06 -12.53 16 25 H 0.07 3.25 6.40 -2.39 -0.02 3.24 16 26 H 0.06 2.32 5.77 -2.38 -0.01 2.31 16 27 H 0.05 2.29 6.71 -2.39 -0.02 2.27 16 28 H 0.28 13.15 8.30 -92.71 -0.77 12.38 16 29 H 0.16 4.18 8.04 -2.91 -0.02 4.15 16 30 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.14 5.07 5.23 -2.91 -0.02 5.05 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.24 7.96 -2.39 -0.02 1.22 16 34 H 0.10 1.31 7.96 -2.39 -0.02 1.29 16 Total: -1.00 -67.72 300.46 4.65 -63.07 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.16 Total: 10.58 kcal Atomic # 6 Polarization: 24.89 SS G_CDS: 5.78 Total: 30.67 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -4.14 Total: -83.67 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -0.19 Total: -62.93 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -67.72 4.65 -63.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337548173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.242 kcal (2) G-P(sol) polarization free energy of solvation -67.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds