Wall clock time and date at job start Tue Mar 31 2020 02:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34233 * 116.99751 * 2 1 4 4 O 1.20828 * 119.99895 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00034 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.06352 * 58.79622 * 5 3 2 7 7 C 1.53989 * 109.91541 * 297.58273 * 5 3 2 8 8 C 1.54594 * 105.14204 * 239.42414 * 7 5 3 9 9 H 1.08993 * 110.87919 * 96.47670 * 8 7 5 10 10 O 1.42901 * 110.72252 * 219.68870 * 8 7 5 11 11 C 1.42903 * 113.99958 * 204.95123 * 10 8 7 12 12 C 1.54944 * 102.91945 * 338.04222 * 8 7 5 13 13 N 1.47903 * 109.91310 * 179.97438 * 5 3 2 14 14 C 1.46905 * 111.00024 * 265.19111 * 13 5 3 15 15 C 1.52999 * 109.46643 * 59.25248 * 14 13 5 16 16 O 1.42906 * 109.47170 * 66.65446 * 15 14 13 17 17 C 1.42897 * 114.00026 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47354 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99885 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99901 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99820 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00485 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46868 * 90.00345 * 22 20 18 24 24 H 1.48498 * 109.47190 * 210.00530 * 22 20 18 25 25 H 1.48500 * 109.46817 * 330.00398 * 22 20 18 26 26 H 1.09001 * 109.47624 * 299.99879 * 1 2 3 27 27 H 1.09001 * 109.47410 * 60.00300 * 1 2 3 28 28 H 1.09007 * 109.46839 * 180.02562 * 1 2 3 29 29 H 1.09009 * 110.30385 * 120.51006 * 7 5 3 30 30 H 1.09002 * 110.31175 * 358.34441 * 7 5 3 31 31 H 1.09002 * 109.46790 * 60.00011 * 11 10 8 32 32 H 1.09003 * 109.47166 * 179.97438 * 11 10 8 33 33 H 1.08995 * 109.47482 * 300.00624 * 11 10 8 34 34 H 1.08992 * 110.67073 * 278.97812 * 12 8 7 35 35 H 1.09004 * 110.80430 * 155.91782 * 12 8 7 36 36 H 1.08998 * 109.47591 * 299.25778 * 14 13 5 37 37 H 1.08997 * 109.47100 * 179.24910 * 14 13 5 38 38 H 1.09005 * 109.47631 * 306.65331 * 15 14 13 39 39 H 1.08998 * 109.47159 * 186.65519 * 15 14 13 40 40 H 1.09004 * 109.47186 * 300.00226 * 17 16 15 41 41 H 1.09002 * 109.47478 * 59.99628 * 17 16 15 42 42 H 0.96992 * 120.00235 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9671 0.7651 -0.8766 7 6 4.1257 0.6328 1.2823 8 6 4.9193 1.7584 1.9844 9 1 4.3116 2.2443 2.7476 10 8 6.1270 1.2473 2.5521 11 6 6.6235 2.0151 3.6504 12 6 5.2303 2.7381 0.8251 13 7 3.9965 2.6901 -0.0011 14 6 4.2591 3.1600 -1.3679 15 6 2.9890 3.0172 -2.2091 16 8 1.9910 3.9162 -1.7213 17 6 0.7583 3.8626 -2.4420 18 6 -0.2153 4.8464 -1.8460 19 1 0.0778 5.4517 -1.0010 20 6 -1.4807 4.9730 -2.3787 21 7 -2.3305 5.8312 -1.8582 22 14 -1.9880 3.9256 -3.8399 23 1 -2.5889 2.6572 -3.3547 24 1 -2.9840 4.6646 -4.6566 25 1 -0.7945 3.6223 -4.6697 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.7868 -0.1972 1.0326 30 1 3.3110 0.2898 1.9201 31 1 5.8781 2.0361 4.4454 32 1 7.5412 1.5618 4.0252 33 1 6.8295 3.0327 3.3186 34 1 6.0908 2.3944 0.2512 35 1 5.4002 3.7457 1.2047 36 1 5.0568 2.5634 -1.8104 37 1 4.5608 4.2070 -1.3405 38 1 2.6208 1.9935 -2.1403 39 1 3.2137 3.2533 -3.2492 40 1 0.9370 4.1166 -3.4869 41 1 0.3436 2.8566 -2.3785 42 1 -3.2205 5.9205 -2.2332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338993749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:46 Heat of formation + Delta-G solvation = -147.360175 kcal Electronic energy + Delta-G solvation = -24491.234286 eV Core-core repulsion = 20859.002346 eV Total energy + Delta-G solvation = -3632.231940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = -0.12 seconds Orbital eigenvalues (eV) -40.57808 -39.01745 -37.46043 -36.28847 -35.71481 -32.73766 -32.01703 -29.90566 -28.53464 -27.24340 -27.11215 -26.16915 -23.47906 -21.74261 -21.55442 -21.31676 -19.80105 -17.58907 -17.01652 -16.73693 -16.55406 -16.17557 -15.60178 -15.53394 -15.28214 -14.94206 -14.32483 -14.09880 -13.91246 -13.81816 -13.42138 -12.94018 -12.71942 -12.50642 -12.31256 -12.14484 -12.00997 -11.94389 -11.62013 -11.52889 -11.24483 -10.92199 -10.83343 -10.67824 -10.42280 -10.31627 -9.87839 -9.78682 -9.72090 -9.01457 -8.67933 -8.44204 -8.26395 -5.98863 -3.94358 2.71077 2.80909 3.28994 3.35709 3.37997 3.38061 4.10706 4.34520 4.39631 4.44813 4.74566 4.82251 4.96144 5.04053 5.12755 5.16244 5.28443 5.28882 5.32272 5.42450 5.43413 5.44847 5.52923 5.58775 5.62528 5.67189 5.77713 5.82649 5.87799 5.93272 6.14881 6.62269 6.73340 6.81747 6.92594 6.99978 7.17134 7.75681 8.21087 8.32643 8.85277 9.17144 9.62089 11.14940 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.004651 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.503539 B = 6019.047893 C = 6513.670683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.432 3.568 4 O -0.416 6.416 5 C 0.081 3.919 6 H 0.087 0.913 7 C -0.113 4.113 8 C 0.083 3.917 9 H 0.083 0.917 10 O -0.381 6.381 11 C 0.030 3.970 12 C 0.018 3.982 13 N -0.481 5.481 14 C 0.054 3.946 15 C 0.061 3.939 16 O -0.345 6.345 17 C 0.177 3.823 18 C -0.498 4.498 19 H 0.082 0.918 20 C 0.069 3.931 21 N -0.901 5.901 22 Si 0.872 3.128 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.268 1.268 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.025 0.975 39 H 0.040 0.960 40 H -0.008 1.008 41 H -0.009 1.009 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.694 -13.374 6.425 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.269 3.731 4 O -0.295 6.295 5 C -0.029 4.029 6 H 0.105 0.895 7 C -0.151 4.151 8 C 0.025 3.975 9 H 0.101 0.899 10 O -0.299 6.299 11 C -0.066 4.066 12 C -0.110 4.110 13 N -0.207 5.207 14 C -0.073 4.073 15 C -0.017 4.017 16 O -0.263 6.263 17 C 0.101 3.899 18 C -0.536 4.536 19 H 0.100 0.900 20 C -0.131 4.131 21 N -0.540 5.540 22 Si 0.699 3.301 23 H -0.202 1.202 24 H -0.209 1.209 25 H -0.193 1.193 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.010 0.990 41 H 0.008 0.992 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.956 -12.648 6.698 21.435 hybrid contribution -0.216 -0.912 -1.375 1.664 sum 15.741 -13.560 5.323 21.447 Atomic orbital electron populations 1.23190 0.76401 1.02799 1.03186 1.86404 1.23238 1.34130 1.85555 1.23345 0.91365 0.82142 0.76275 1.91016 1.65247 1.34715 1.38492 1.21786 0.89688 0.91516 0.99898 0.89525 1.22361 0.99851 0.98079 0.94793 1.23045 0.85719 0.93747 0.95022 0.89931 1.87886 1.40887 1.52415 1.48759 1.22804 0.99281 0.95907 0.88647 1.23709 0.91545 1.00887 0.94865 1.64240 1.28030 1.15765 1.12693 1.22370 0.95892 1.01975 0.87087 1.22288 0.90005 0.93945 0.95472 1.88083 1.22618 1.58545 1.57053 1.20442 0.82644 0.95907 0.90878 1.20863 0.95663 1.20449 1.16651 0.89967 1.24741 0.96089 0.95444 0.96864 1.69880 1.06501 1.36035 1.41607 0.86915 0.78755 0.80904 0.83511 1.20194 1.20911 1.19329 0.91880 0.91731 0.88736 0.88863 0.89554 0.93800 0.89654 0.93754 0.92473 0.89112 0.93618 0.88874 0.95707 0.94172 0.99008 0.99156 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.55 101.05 1.07 1.61 16 2 O -0.37 -5.80 10.54 -39.27 -0.41 -6.21 16 3 C 0.43 7.52 5.46 36.01 0.20 7.72 16 4 O -0.42 -9.32 12.77 -26.08 -0.33 -9.66 16 5 C 0.08 1.13 2.41 -67.80 -0.16 0.96 16 6 H 0.09 1.06 7.53 -51.93 -0.39 0.67 16 7 C -0.11 -1.27 6.30 -25.38 -0.16 -1.43 16 8 C 0.08 0.92 3.51 -24.87 -0.09 0.83 16 9 H 0.08 0.93 7.88 -51.93 -0.41 0.52 16 10 O -0.38 -3.97 10.44 -35.23 -0.37 -4.34 16 11 C 0.03 0.23 10.88 101.05 1.10 1.33 16 12 C 0.02 0.21 6.28 -1.88 -0.01 0.19 16 13 N -0.48 -7.26 4.53 -223.92 -1.01 -8.28 16 14 C 0.05 0.80 5.18 -3.82 -0.02 0.78 16 15 C 0.06 1.14 5.25 37.16 0.20 1.34 16 16 O -0.34 -8.56 8.33 -57.25 -0.48 -9.04 16 17 C 0.18 4.80 4.32 36.01 0.16 4.95 16 18 C -0.50 -15.61 9.99 -34.44 -0.34 -15.95 16 19 H 0.08 2.85 8.06 -52.49 -0.42 2.43 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -28.86 13.96 55.43 0.77 -28.08 16 22 Si 0.87 22.34 27.47 -169.99 -4.67 17.67 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 26 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 27 H 0.06 1.06 8.13 -51.93 -0.42 0.63 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.09 0.91 8.07 -51.92 -0.42 0.49 16 30 H 0.09 0.97 7.68 -51.93 -0.40 0.57 16 31 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.60 7.95 -51.93 -0.41 0.18 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.53 8.00 -51.93 -0.42 0.11 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.02 0.46 5.62 -51.93 -0.29 0.17 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H -0.01 -0.20 7.20 -51.93 -0.37 -0.58 16 41 H -0.01 -0.25 7.48 -51.93 -0.39 -0.64 16 42 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 341.41 15.07 5.14 5.14 Total: -1.00 -36.61 341.41 -6.42 -43.03 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -6.89 Total: -4.61 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 1.83 Total: 4.36 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.24 Total: -36.36 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -1.59 Total: -29.25 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.61 -6.42 -43.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338993749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.327 kcal (2) G-P(sol) polarization free energy of solvation -36.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.12 seconds