Wall clock time and date at job start Tue Mar 31 2020 02:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34233 * 116.99751 * 2 1 4 4 O 1.20828 * 119.99895 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00034 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.06352 * 58.79622 * 5 3 2 7 7 C 1.53989 * 109.91541 * 297.58273 * 5 3 2 8 8 C 1.54594 * 105.14204 * 239.42414 * 7 5 3 9 9 H 1.08993 * 110.87919 * 96.47670 * 8 7 5 10 10 O 1.42901 * 110.72252 * 219.68870 * 8 7 5 11 11 C 1.42903 * 113.99958 * 204.95123 * 10 8 7 12 12 C 1.54944 * 102.91945 * 338.04222 * 8 7 5 13 13 N 1.47903 * 109.91310 * 179.97438 * 5 3 2 14 14 C 1.46905 * 111.00024 * 265.19111 * 13 5 3 15 15 C 1.52999 * 109.46643 * 59.25248 * 14 13 5 16 16 O 1.42906 * 109.47170 * 66.65446 * 15 14 13 17 17 C 1.42897 * 114.00026 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47354 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99885 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99901 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99820 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00485 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46868 * 90.00345 * 22 20 18 24 24 H 1.48498 * 109.47190 * 210.00530 * 22 20 18 25 25 H 1.48500 * 109.46817 * 330.00398 * 22 20 18 26 26 H 1.09001 * 109.47624 * 299.99879 * 1 2 3 27 27 H 1.09001 * 109.47410 * 60.00300 * 1 2 3 28 28 H 1.09007 * 109.46839 * 180.02562 * 1 2 3 29 29 H 1.09009 * 110.30385 * 120.51006 * 7 5 3 30 30 H 1.09002 * 110.31175 * 358.34441 * 7 5 3 31 31 H 1.09002 * 109.46790 * 60.00011 * 11 10 8 32 32 H 1.09003 * 109.47166 * 179.97438 * 11 10 8 33 33 H 1.08995 * 109.47482 * 300.00624 * 11 10 8 34 34 H 1.08992 * 110.67073 * 278.97812 * 12 8 7 35 35 H 1.09004 * 110.80430 * 155.91782 * 12 8 7 36 36 H 1.08998 * 109.47591 * 299.25778 * 14 13 5 37 37 H 1.08997 * 109.47100 * 179.24910 * 14 13 5 38 38 H 1.09005 * 109.47631 * 306.65331 * 15 14 13 39 39 H 1.08998 * 109.47159 * 186.65519 * 15 14 13 40 40 H 1.09004 * 109.47186 * 300.00226 * 17 16 15 41 41 H 1.09002 * 109.47478 * 59.99628 * 17 16 15 42 42 H 0.96992 * 120.00235 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9671 0.7651 -0.8766 7 6 4.1257 0.6328 1.2823 8 6 4.9193 1.7584 1.9844 9 1 4.3116 2.2443 2.7476 10 8 6.1270 1.2473 2.5521 11 6 6.6235 2.0151 3.6504 12 6 5.2303 2.7381 0.8251 13 7 3.9965 2.6901 -0.0011 14 6 4.2591 3.1600 -1.3679 15 6 2.9890 3.0172 -2.2091 16 8 1.9910 3.9162 -1.7213 17 6 0.7583 3.8626 -2.4420 18 6 -0.2153 4.8464 -1.8460 19 1 0.0778 5.4517 -1.0010 20 6 -1.4807 4.9730 -2.3787 21 7 -2.3305 5.8312 -1.8582 22 14 -1.9880 3.9256 -3.8399 23 1 -2.5889 2.6572 -3.3547 24 1 -2.9840 4.6646 -4.6566 25 1 -0.7945 3.6223 -4.6697 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.7868 -0.1972 1.0326 30 1 3.3110 0.2898 1.9201 31 1 5.8781 2.0361 4.4454 32 1 7.5412 1.5618 4.0252 33 1 6.8295 3.0327 3.3186 34 1 6.0908 2.3944 0.2512 35 1 5.4002 3.7457 1.2047 36 1 5.0568 2.5634 -1.8104 37 1 4.5608 4.2070 -1.3405 38 1 2.6208 1.9935 -2.1403 39 1 3.2137 3.2533 -3.2492 40 1 0.9370 4.1166 -3.4869 41 1 0.3436 2.8566 -2.3785 42 1 -3.2205 5.9205 -2.2332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338993749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:42 Heat of formation + Delta-G solvation = -175.352959 kcal Electronic energy + Delta-G solvation = -24492.448144 eV Core-core repulsion = 20859.002346 eV Total energy + Delta-G solvation = -3633.445798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78336 -40.08985 -38.72597 -37.72545 -37.07361 -34.89375 -33.34158 -31.05775 -30.21400 -28.71406 -28.24119 -27.01130 -24.63183 -23.93614 -22.86476 -22.22656 -20.99118 -19.03006 -18.70212 -18.05096 -17.86727 -17.40838 -17.20407 -16.63094 -16.52340 -16.27880 -15.89064 -15.35041 -15.09397 -15.00007 -14.71830 -14.53414 -14.01156 -13.91362 -13.70835 -13.48088 -13.38873 -12.99125 -12.85482 -12.73591 -12.63028 -12.37566 -12.29750 -12.00760 -11.84244 -11.72466 -11.66003 -11.30746 -11.17442 -10.91585 -10.58118 -10.21261 -9.46288 -8.35930 -6.40809 1.26179 1.30345 1.39632 1.41302 1.66330 2.27349 2.52923 2.95782 3.05884 3.23205 3.42025 3.48728 3.83921 4.01389 4.11618 4.12637 4.16517 4.29451 4.34723 4.34752 4.41558 4.48670 4.55113 4.58267 4.59019 4.66607 4.71360 4.77092 4.84908 4.89548 4.91554 4.96269 5.04229 5.47177 5.49519 5.68036 5.85998 6.02268 6.22137 6.61867 6.86375 7.01812 7.22595 8.82205 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.004651 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.503539 B = 6019.047893 C = 6513.670683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.432 3.568 4 O -0.477 6.477 5 C 0.084 3.916 6 H 0.112 0.888 7 C -0.105 4.105 8 C 0.088 3.912 9 H 0.072 0.928 10 O -0.388 6.388 11 C 0.023 3.977 12 C 0.024 3.976 13 N -0.517 5.517 14 C 0.060 3.940 15 C 0.051 3.949 16 O -0.371 6.371 17 C 0.195 3.805 18 C -0.526 4.526 19 H 0.023 0.977 20 C 0.011 3.989 21 N -0.946 5.946 22 Si 0.952 3.048 23 H -0.261 1.261 24 H -0.268 1.268 25 H -0.249 1.249 26 H 0.051 0.949 27 H 0.039 0.961 28 H 0.139 0.861 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.026 0.974 39 H 0.057 0.943 40 H 0.001 0.999 41 H -0.010 1.010 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.446 -15.967 5.099 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.271 3.729 4 O -0.360 6.360 5 C -0.026 4.026 6 H 0.129 0.871 7 C -0.143 4.143 8 C 0.029 3.971 9 H 0.090 0.910 10 O -0.307 6.307 11 C -0.073 4.073 12 C -0.103 4.103 13 N -0.244 5.244 14 C -0.067 4.067 15 C -0.026 4.026 16 O -0.290 6.290 17 C 0.119 3.881 18 C -0.563 4.563 19 H 0.042 0.958 20 C -0.186 4.186 21 N -0.586 5.586 22 Si 0.773 3.227 23 H -0.186 1.186 24 H -0.193 1.193 25 H -0.173 1.173 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.157 0.843 29 H 0.134 0.866 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.018 0.982 41 H 0.007 0.993 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.753 -15.263 5.392 24.024 hybrid contribution -0.715 -0.071 -0.819 1.089 sum 17.038 -15.333 4.573 23.373 Atomic orbital electron populations 1.23355 0.75937 1.05136 1.01429 1.86425 1.23741 1.33277 1.84919 1.24252 0.92899 0.81606 0.74099 1.91010 1.66793 1.36599 1.41586 1.21911 0.87040 0.91506 1.02175 0.87104 1.22336 0.99997 0.98512 0.93453 1.22898 0.86017 0.93475 0.94698 0.90969 1.87865 1.40331 1.52911 1.49543 1.23002 1.00060 0.96204 0.88022 1.23706 0.90766 1.01161 0.94671 1.64104 1.30212 1.16858 1.13248 1.22344 0.94704 1.02671 0.86965 1.22674 0.89912 0.92812 0.97234 1.88036 1.22762 1.60501 1.57704 1.20027 0.83147 0.94161 0.90733 1.21062 0.97885 1.21542 1.15854 0.95827 1.25802 0.95502 0.96757 1.00545 1.70043 1.07239 1.37704 1.43598 0.85666 0.79181 0.79006 0.78811 1.18615 1.19321 1.17298 0.92980 0.94208 0.84274 0.86561 0.90003 0.93531 0.87783 0.93266 0.90502 0.89252 0.89288 0.89413 0.95578 0.92481 0.98167 0.99285 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.99 10.55 113.37 1.20 2.19 16 2 O -0.37 -11.00 10.54 -51.44 -0.54 -11.54 16 3 C 0.43 14.97 5.46 71.24 0.39 15.35 16 4 O -0.48 -22.16 12.77 28.96 0.37 -21.79 16 5 C 0.08 2.17 2.41 44.31 0.11 2.28 16 6 H 0.11 2.33 7.53 -2.39 -0.02 2.32 16 7 C -0.11 -2.13 6.30 31.47 0.20 -1.93 16 8 C 0.09 1.79 3.51 31.80 0.11 1.90 16 9 H 0.07 1.60 7.88 -2.39 -0.02 1.58 16 10 O -0.39 -7.13 10.44 -148.98 -1.56 -8.69 16 11 C 0.02 0.30 10.88 113.37 1.23 1.54 16 12 C 0.02 0.51 6.28 86.65 0.54 1.05 16 13 N -0.52 -14.99 4.53 -862.34 -3.90 -18.89 16 14 C 0.06 1.67 5.18 86.30 0.45 2.12 16 15 C 0.05 1.85 5.25 71.98 0.38 2.23 16 16 O -0.37 -18.86 8.33 -127.92 -1.07 -19.93 16 17 C 0.20 10.77 4.32 71.24 0.31 11.07 16 18 C -0.53 -34.49 9.99 25.60 0.26 -34.23 16 19 H 0.02 1.75 8.06 -2.91 -0.02 1.73 16 20 C 0.01 0.68 5.47 84.65 0.46 1.14 16 21 N -0.95 -62.49 13.96 21.45 0.30 -62.19 16 22 Si 0.95 46.07 27.47 68.60 1.88 47.95 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 26 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 27 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 28 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 29 H 0.12 1.84 8.07 -2.38 -0.02 1.82 16 30 H 0.08 1.73 7.68 -2.39 -0.02 1.71 16 31 H 0.05 0.59 8.11 -2.39 -0.02 0.57 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 1.34 7.95 -2.39 -0.02 1.32 16 35 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.09 1.69 8.00 -2.39 -0.02 1.68 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.03 0.93 5.62 -2.38 -0.01 0.92 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.00 0.04 7.20 -2.38 -0.02 0.02 16 41 H -0.01 -0.57 7.48 -2.39 -0.02 -0.59 16 42 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 Total: -1.00 -84.02 341.41 2.05 -81.96 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.94 Total: 8.40 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 5.63 Total: 4.71 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -3.60 Total: -81.08 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -2.79 Total: -61.94 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.95 kcal Total: -84.02 2.05 -81.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338993749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.391 kcal (2) G-P(sol) polarization free energy of solvation -84.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds