Wall clock time and date at job start Tue Mar 31 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 116.99945 * 2 1 4 4 O 1.20829 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00140 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.50555 * 55.09150 * 5 3 2 7 7 C 1.53096 * 109.50566 * 295.00336 * 5 3 2 8 8 N 1.47020 * 109.25373 * 183.21406 * 7 5 3 9 9 C 1.46905 * 110.99512 * 182.39320 * 8 7 5 10 10 C 1.53004 * 109.47225 * 66.04952 * 9 8 7 11 11 O 1.42904 * 109.46976 * 64.99376 * 10 9 8 12 12 C 1.42898 * 113.99522 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47060 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 C 1.47011 * 110.75419 * 58.62318 * 8 7 5 22 22 C 1.53103 * 109.25325 * 301.37862 * 21 8 7 23 23 H 1.09001 * 109.54234 * 296.89298 * 22 21 8 24 24 C 1.52998 * 109.50591 * 176.78567 * 22 21 8 25 25 O 1.43015 * 109.50514 * 175.22154 * 5 3 2 26 26 H 1.09001 * 109.47189 * 59.99637 * 1 2 3 27 27 H 1.09003 * 109.46771 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47000 * 299.99769 * 1 2 3 29 29 H 1.09000 * 109.50655 * 63.28691 * 7 5 3 30 30 H 1.08998 * 109.51405 * 303.14929 * 7 5 3 31 31 H 1.09000 * 109.47280 * 306.04595 * 9 8 7 32 32 H 1.09005 * 109.46911 * 186.04378 * 9 8 7 33 33 H 1.08994 * 109.46944 * 304.99976 * 10 9 8 34 34 H 1.08998 * 109.47249 * 184.99535 * 10 9 8 35 35 H 1.09004 * 109.47106 * 60.00836 * 12 11 10 36 36 H 1.08993 * 109.47575 * 300.00461 * 12 11 10 37 37 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 38 38 H 1.08990 * 109.50782 * 61.31029 * 21 8 7 39 39 H 1.08998 * 109.50424 * 181.45139 * 21 8 7 40 40 H 1.09002 * 109.47303 * 300.21838 * 24 22 21 41 41 H 1.08994 * 109.47553 * 60.21571 * 24 22 21 42 42 H 1.09005 * 109.47181 * 180.21921 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9609 0.7066 -0.8417 7 6 4.1082 0.6928 1.3088 8 7 5.5705 0.8426 1.3370 9 6 6.1374 0.2444 2.5531 10 6 5.9273 -1.2708 2.5219 11 8 6.6735 -1.8330 1.4406 12 6 6.5462 -3.2514 1.3223 13 6 7.3694 -3.7341 0.1559 14 1 7.9337 -3.0282 -0.4355 15 6 7.4022 -5.0766 -0.1562 16 7 6.7193 -5.9367 0.5672 17 14 8.4232 -5.6749 -1.6016 18 1 8.2956 -7.1496 -1.7210 19 1 7.9377 -5.0333 -2.8498 20 1 9.8478 -5.3174 -1.3829 21 6 5.9516 2.2575 1.2189 22 6 5.3912 2.8239 -0.0884 23 1 5.8394 2.3018 -0.9338 24 6 5.7159 4.3163 -0.1793 25 8 3.9728 2.6414 -0.1118 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.8494 -0.3641 1.3717 30 1 3.6714 1.2261 2.1531 31 1 5.6410 0.6622 3.4290 32 1 7.2044 0.4622 2.6017 33 1 4.8681 -1.4879 2.3840 34 1 6.2675 -1.7043 3.4624 35 1 5.4998 -3.5100 1.1596 36 1 6.8995 -3.7256 2.2378 37 1 6.1893 -5.6262 1.3179 38 1 5.5442 2.8157 2.0617 39 1 7.0383 2.3427 1.2162 40 1 5.2688 4.8376 0.6671 41 1 6.7968 4.4547 -0.1613 42 1 5.3132 4.7198 -1.1084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339173356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:08 Heat of formation + Delta-G solvation = -169.041295 kcal Electronic energy + Delta-G solvation = -23738.675537 eV Core-core repulsion = 20105.503433 eV Total energy + Delta-G solvation = -3633.172104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.88797 -39.55887 -37.25196 -36.55597 -35.52026 -33.24398 -32.93259 -30.40559 -28.92686 -27.61179 -26.43320 -25.38000 -24.03461 -22.47763 -21.50699 -21.01698 -20.51115 -17.80896 -17.30232 -16.96284 -16.75325 -16.49629 -15.98654 -15.68282 -15.50699 -14.80820 -14.63598 -14.22986 -13.75759 -13.63839 -13.35219 -13.29992 -12.92406 -12.61440 -12.56432 -12.39875 -12.12702 -11.94437 -11.74023 -11.51850 -11.41059 -11.13766 -10.97817 -10.84024 -10.67829 -10.35870 -10.21283 -10.07786 -9.75906 -8.82765 -8.61671 -8.37371 -8.20792 -6.44028 -4.12144 1.97785 2.16060 3.44591 3.47328 3.55187 3.66048 3.82626 4.42245 4.49796 4.59012 4.67160 4.73735 4.88657 4.93121 4.96911 5.00636 5.09989 5.21014 5.33103 5.33888 5.34556 5.39905 5.43372 5.52859 5.61058 5.65338 5.81475 5.82670 5.94590 5.96040 6.11424 6.14135 6.77092 6.79799 6.91552 6.95788 7.15375 7.58408 7.92713 8.21150 8.67405 8.83991 9.58315 10.96220 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.004231 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.089126 B = 6616.216174 C = 7484.847476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.472 3.528 4 O -0.490 6.490 5 C 0.107 3.893 6 H 0.112 0.888 7 C 0.031 3.969 8 N -0.520 5.520 9 C 0.063 3.937 10 C 0.062 3.938 11 O -0.371 6.371 12 C 0.185 3.815 13 C -0.592 4.592 14 H 0.060 0.940 15 C 0.017 3.983 16 N -0.913 5.913 17 Si 1.078 2.922 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.022 3.978 22 C 0.090 3.910 23 H 0.076 0.924 24 C -0.142 4.142 25 O -0.362 6.362 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.042 0.958 35 H -0.006 1.006 36 H -0.008 1.008 37 H 0.266 0.734 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.446 16.738 1.765 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.267 6.267 3 C 0.313 3.687 4 O -0.375 6.375 5 C 0.048 3.952 6 H 0.129 0.871 7 C -0.098 4.098 8 N -0.245 5.245 9 C -0.064 4.064 10 C -0.016 4.016 11 O -0.290 6.290 12 C 0.111 3.889 13 C -0.631 4.631 14 H 0.079 0.921 15 C -0.186 4.186 16 N -0.549 5.549 17 Si 0.905 3.095 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.107 4.107 22 C 0.033 3.967 23 H 0.094 0.906 24 C -0.199 4.199 25 O -0.281 6.281 26 H 0.083 0.917 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.012 0.988 36 H 0.010 0.990 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.053 15.687 0.384 17.204 hybrid contribution -1.086 1.453 1.906 2.631 sum -8.139 17.141 2.290 19.113 Atomic orbital electron populations 1.23322 0.75734 1.04086 1.02541 1.86535 1.23734 1.32413 1.83985 1.23110 0.90960 0.81737 0.72918 1.90670 1.66683 1.36296 1.43882 1.21348 0.87379 0.85686 1.00833 0.87061 1.22671 0.89110 1.02961 0.95028 1.62085 1.08244 1.14618 1.39550 1.22168 1.00770 0.94310 0.89163 1.22318 0.95662 0.92059 0.91580 1.87979 1.68707 1.23808 1.48495 1.20274 0.95630 0.76458 0.96584 1.21888 1.31362 0.95235 1.14581 0.92135 1.25912 0.97951 0.92591 1.02183 1.70803 1.28480 1.37044 1.18555 0.83417 0.75457 0.76046 0.74549 1.20696 1.21206 1.21252 1.22879 1.01883 0.88380 0.97516 1.22299 0.79931 0.97173 0.97332 0.90564 1.21732 1.01842 0.93089 1.03247 1.88000 1.23037 1.22542 1.94547 0.91747 0.87613 0.91845 0.87736 0.93807 0.93884 0.89468 0.94456 0.94013 0.98840 0.99024 0.92371 0.94026 0.88978 0.91844 0.90481 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.35 -4.59 10.56 -39.25 -0.41 -5.00 16 3 C 0.47 6.81 7.29 36.01 0.26 7.07 16 4 O -0.49 -8.10 16.26 -25.46 -0.41 -8.52 16 5 C 0.11 1.51 3.33 -27.83 -0.09 1.41 16 6 H 0.11 1.56 8.14 -51.93 -0.42 1.13 16 7 C 0.03 0.43 4.70 -3.71 -0.02 0.41 16 8 N -0.52 -7.61 4.68 -234.30 -1.10 -8.71 16 9 C 0.06 0.91 5.34 -3.82 -0.02 0.89 16 10 C 0.06 1.11 6.00 37.16 0.22 1.33 16 11 O -0.37 -8.87 10.27 -35.23 -0.36 -9.23 16 12 C 0.19 5.03 5.00 36.01 0.18 5.21 16 13 C -0.59 -17.63 9.43 -34.44 -0.32 -17.95 16 14 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 15 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 16 N -0.91 -27.97 13.65 55.43 0.76 -27.21 16 17 Si 1.08 25.48 29.90 -169.99 -5.08 20.39 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.02 0.26 4.93 -3.71 -0.02 0.24 16 22 C 0.09 1.06 3.43 -26.68 -0.09 0.97 16 23 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 24 C -0.14 -1.28 9.57 37.16 0.36 -0.92 16 25 O -0.36 -5.17 9.65 -55.11 -0.53 -5.70 16 26 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 27 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.10 1.54 6.28 -51.93 -0.33 1.22 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.09 1.23 8.04 -51.93 -0.42 0.81 16 33 H 0.04 0.65 6.29 -51.93 -0.33 0.32 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H -0.01 -0.17 8.01 -51.93 -0.42 -0.58 16 36 H -0.01 -0.22 8.00 -51.93 -0.42 -0.63 16 37 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -34.95 348.75 -7.36 -42.31 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -6.89 Total: -4.05 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 1.43 Total: 0.46 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.34 Total: -35.92 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -1.72 Total: -28.45 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.95 -7.36 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339173356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.733 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds