Wall clock time and date at job start Tue Mar 31 2020 02:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 116.99945 * 2 1 4 4 O 1.20829 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00140 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.50555 * 55.09150 * 5 3 2 7 7 C 1.53096 * 109.50566 * 295.00336 * 5 3 2 8 8 N 1.47020 * 109.25373 * 183.21406 * 7 5 3 9 9 C 1.46905 * 110.99512 * 182.39320 * 8 7 5 10 10 C 1.53004 * 109.47225 * 66.04952 * 9 8 7 11 11 O 1.42904 * 109.46976 * 64.99376 * 10 9 8 12 12 C 1.42898 * 113.99522 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47060 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 C 1.47011 * 110.75419 * 58.62318 * 8 7 5 22 22 C 1.53103 * 109.25325 * 301.37862 * 21 8 7 23 23 H 1.09001 * 109.54234 * 296.89298 * 22 21 8 24 24 C 1.52998 * 109.50591 * 176.78567 * 22 21 8 25 25 O 1.43015 * 109.50514 * 175.22154 * 5 3 2 26 26 H 1.09001 * 109.47189 * 59.99637 * 1 2 3 27 27 H 1.09003 * 109.46771 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47000 * 299.99769 * 1 2 3 29 29 H 1.09000 * 109.50655 * 63.28691 * 7 5 3 30 30 H 1.08998 * 109.51405 * 303.14929 * 7 5 3 31 31 H 1.09000 * 109.47280 * 306.04595 * 9 8 7 32 32 H 1.09005 * 109.46911 * 186.04378 * 9 8 7 33 33 H 1.08994 * 109.46944 * 304.99976 * 10 9 8 34 34 H 1.08998 * 109.47249 * 184.99535 * 10 9 8 35 35 H 1.09004 * 109.47106 * 60.00836 * 12 11 10 36 36 H 1.08993 * 109.47575 * 300.00461 * 12 11 10 37 37 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 38 38 H 1.08990 * 109.50782 * 61.31029 * 21 8 7 39 39 H 1.08998 * 109.50424 * 181.45139 * 21 8 7 40 40 H 1.09002 * 109.47303 * 300.21838 * 24 22 21 41 41 H 1.08994 * 109.47553 * 60.21571 * 24 22 21 42 42 H 1.09005 * 109.47181 * 180.21921 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9609 0.7066 -0.8417 7 6 4.1082 0.6928 1.3088 8 7 5.5705 0.8426 1.3370 9 6 6.1374 0.2444 2.5531 10 6 5.9273 -1.2708 2.5219 11 8 6.6735 -1.8330 1.4406 12 6 6.5462 -3.2514 1.3223 13 6 7.3694 -3.7341 0.1559 14 1 7.9337 -3.0282 -0.4355 15 6 7.4022 -5.0766 -0.1562 16 7 6.7193 -5.9367 0.5672 17 14 8.4232 -5.6749 -1.6016 18 1 8.2956 -7.1496 -1.7210 19 1 7.9377 -5.0333 -2.8498 20 1 9.8478 -5.3174 -1.3829 21 6 5.9516 2.2575 1.2189 22 6 5.3912 2.8239 -0.0884 23 1 5.8394 2.3018 -0.9338 24 6 5.7159 4.3163 -0.1793 25 8 3.9728 2.6414 -0.1118 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.8494 -0.3641 1.3717 30 1 3.6714 1.2261 2.1531 31 1 5.6410 0.6622 3.4290 32 1 7.2044 0.4622 2.6017 33 1 4.8681 -1.4879 2.3840 34 1 6.2675 -1.7043 3.4624 35 1 5.4998 -3.5100 1.1596 36 1 6.8995 -3.7256 2.2378 37 1 6.1893 -5.6262 1.3179 38 1 5.5442 2.8157 2.0617 39 1 7.0383 2.3427 1.2162 40 1 5.2688 4.8376 0.6671 41 1 6.7968 4.4547 -0.1613 42 1 5.3132 4.7198 -1.1084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339173356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:01 Heat of formation + Delta-G solvation = -193.712840 kcal Electronic energy + Delta-G solvation = -23739.745375 eV Core-core repulsion = 20105.503433 eV Total energy + Delta-G solvation = -3634.241942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 5.71 seconds Orbital eigenvalues (eV) -41.97644 -40.61987 -38.83935 -37.70761 -36.84553 -35.12072 -34.18107 -31.63918 -30.09451 -28.56499 -28.33617 -26.45954 -25.18922 -24.66453 -22.52421 -22.21870 -21.56032 -19.15383 -18.89056 -18.37422 -17.88368 -17.56363 -17.42387 -16.94156 -16.67833 -16.12613 -15.91945 -15.67726 -15.34463 -14.94521 -14.89300 -14.35200 -14.20291 -13.82821 -13.60643 -13.58261 -13.20459 -13.19817 -12.96039 -12.90380 -12.74121 -12.46018 -12.40752 -12.11337 -11.94310 -11.88879 -11.67841 -11.45807 -10.82921 -10.81475 -10.79526 -10.28255 -9.44337 -8.79132 -6.49543 0.84695 1.17591 1.55212 1.63994 1.84904 2.49030 2.53178 2.84979 3.07539 3.09036 3.45389 3.56053 3.71633 3.81948 3.95340 4.11711 4.17603 4.20389 4.21679 4.25734 4.31034 4.35589 4.50406 4.52504 4.59269 4.63071 4.65904 4.67799 4.82804 4.83603 4.96090 5.00952 5.11543 5.24149 5.71374 5.76817 5.83922 5.94360 5.98800 6.38375 6.49937 6.73689 7.31071 8.62070 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.004231 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.089126 B = 6616.216174 C = 7484.847476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.477 3.523 4 O -0.515 6.515 5 C 0.107 3.893 6 H 0.106 0.894 7 C 0.038 3.962 8 N -0.544 5.544 9 C 0.071 3.929 10 C 0.052 3.948 11 O -0.387 6.387 12 C 0.197 3.803 13 C -0.619 4.619 14 H 0.053 0.947 15 C -0.028 4.028 16 N -0.930 5.930 17 Si 1.126 2.874 18 H -0.277 1.277 19 H -0.268 1.268 20 H -0.267 1.267 21 C 0.025 3.975 22 C 0.084 3.916 23 H 0.068 0.932 24 C -0.135 4.135 25 O -0.375 6.375 26 H 0.068 0.932 27 H 0.132 0.868 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.040 0.960 34 H 0.052 0.948 35 H -0.021 1.021 36 H -0.020 1.020 37 H 0.255 0.745 38 H 0.052 0.948 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 17.629 1.581 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.319 3.681 4 O -0.403 6.403 5 C 0.048 3.952 6 H 0.124 0.876 7 C -0.091 4.091 8 N -0.270 5.270 9 C -0.056 4.056 10 C -0.025 4.025 11 O -0.306 6.306 12 C 0.121 3.879 13 C -0.656 4.656 14 H 0.071 0.929 15 C -0.226 4.226 16 N -0.567 5.567 17 Si 0.945 3.055 18 H -0.202 1.202 19 H -0.193 1.193 20 H -0.192 1.192 21 C -0.103 4.103 22 C 0.027 3.973 23 H 0.086 0.914 24 C -0.192 4.192 25 O -0.295 6.295 26 H 0.087 0.913 27 H 0.150 0.850 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.058 0.942 34 H 0.070 0.930 35 H -0.003 1.003 36 H -0.002 1.002 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.446 16.603 0.227 17.812 hybrid contribution -1.353 1.216 2.022 2.719 sum -7.799 17.819 2.249 19.581 Atomic orbital electron populations 1.23660 0.73723 1.06044 1.03054 1.86528 1.25801 1.31735 1.83493 1.23166 0.91063 0.81711 0.72162 1.90648 1.67219 1.37086 1.45303 1.21318 0.87308 0.85874 1.00735 0.87626 1.22552 0.89132 1.02165 0.95234 1.62041 1.08433 1.16547 1.39942 1.22105 1.01527 0.91504 0.90426 1.22677 0.95222 0.94445 0.90175 1.87924 1.69949 1.21664 1.51035 1.19922 0.94179 0.78481 0.95290 1.22247 1.32016 0.95806 1.15566 0.92887 1.27538 0.98066 0.92848 1.04111 1.70928 1.29385 1.37444 1.18930 0.82843 0.74910 0.75883 0.71848 1.20236 1.19314 1.19201 1.22929 1.02736 0.86780 0.97808 1.22531 0.78728 0.98968 0.97115 0.91356 1.21740 1.03329 0.90870 1.03300 1.88003 1.24565 1.22371 1.94591 0.91339 0.84978 0.91294 0.89074 0.92943 0.90749 0.88952 0.94178 0.92996 1.00295 1.00224 0.93563 0.92962 0.87601 0.91651 0.88214 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -9.34 10.56 -51.40 -0.54 -9.89 16 3 C 0.48 13.76 7.29 71.24 0.52 14.28 16 4 O -0.51 -17.00 16.26 28.37 0.46 -16.54 16 5 C 0.11 3.01 3.33 29.88 0.10 3.11 16 6 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 7 C 0.04 1.03 4.70 86.31 0.41 1.44 16 8 N -0.54 -15.23 4.68 -895.19 -4.19 -19.41 16 9 C 0.07 1.92 5.34 86.30 0.46 2.38 16 10 C 0.05 1.83 6.00 71.98 0.43 2.26 16 11 O -0.39 -18.57 10.27 -148.98 -1.53 -20.10 16 12 C 0.20 10.90 5.00 71.24 0.36 11.26 16 13 C -0.62 -37.15 9.43 25.60 0.24 -36.91 16 14 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 15 C -0.03 -1.65 5.46 84.65 0.46 -1.19 16 16 N -0.93 -57.40 13.65 21.45 0.29 -57.11 16 17 Si 1.13 50.29 29.90 68.60 2.05 52.34 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 21 C 0.02 0.54 4.93 86.32 0.43 0.97 16 22 C 0.08 1.87 3.43 30.63 0.10 1.98 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 24 C -0.14 -2.17 9.57 71.98 0.69 -1.48 16 25 O -0.38 -10.51 9.65 -129.97 -1.25 -11.77 16 26 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 27 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 29 H 0.09 2.70 6.28 -2.39 -0.01 2.69 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.57 8.12 -2.39 -0.02 1.55 16 32 H 0.09 2.40 8.04 -2.38 -0.02 2.38 16 33 H 0.04 1.39 6.29 -2.39 -0.02 1.37 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H -0.02 -1.18 8.01 -2.39 -0.02 -1.19 16 36 H -0.02 -1.12 8.00 -2.39 -0.02 -1.14 16 37 H 0.26 15.88 7.22 -92.71 -0.67 15.21 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 2.01 8.09 -2.39 -0.02 1.99 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -74.87 348.75 1.77 -73.10 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.09 Total: 9.59 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.39 Total: -0.21 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -3.89 Total: -76.52 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -2.87 Total: -58.29 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.05 Total: 52.34 kcal Total: -74.87 1.77 -73.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339173356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.617 kcal (2) G-P(sol) polarization free energy of solvation -74.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.71 seconds