Wall clock time and date at job start Tue Mar 31 2020 02:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00130 * 2 1 4 4 C 1.50697 * 109.47384 * 66.04296 * 3 2 1 5 5 N 1.31071 * 126.66064 * 269.69056 * 4 3 2 6 6 N 1.28848 * 107.99026 * 179.89425 * 5 4 3 7 7 N 1.28746 * 109.39500 * 0.37326 * 6 5 4 8 8 N 1.29025 * 108.80873 * 359.76618 * 7 6 5 9 9 C 1.46500 * 126.43655 * 179.97438 * 8 7 6 10 10 C 1.46903 * 110.99857 * 236.04449 * 2 1 3 11 11 C 1.50707 * 109.47031 * 293.95569 * 10 2 1 12 12 C 1.38635 * 119.74865 * 270.25602 * 11 10 2 13 13 C 1.37613 * 120.24483 * 180.26071 * 12 11 10 14 14 C 1.40709 * 119.74954 * 359.46596 * 13 12 11 15 15 C 1.41391 * 120.24881 * 180.29949 * 14 13 12 16 16 H 1.08006 * 120.00159 * 24.38124 * 15 14 13 17 17 C 1.39949 * 120.00394 * 204.37955 * 15 14 13 18 18 N 1.30826 * 119.99793 * 17.83971 * 17 15 14 19 19 Si 1.86793 * 120.00334 * 197.84214 * 17 15 14 20 20 H 1.48504 * 109.47163 * 59.99946 * 19 17 15 21 21 H 1.48493 * 109.47398 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47268 * 300.00028 * 19 17 15 23 23 C 1.40717 * 119.50871 * 0.27696 * 14 13 12 24 24 C 1.37615 * 119.74803 * 359.97438 * 23 14 13 25 25 H 1.08998 * 109.47432 * 183.95111 * 1 2 3 26 26 H 1.08999 * 109.47259 * 303.95917 * 1 2 3 27 27 H 1.09004 * 109.47016 * 63.95375 * 1 2 3 28 28 H 1.08996 * 109.47121 * 186.04877 * 3 2 1 29 29 H 1.09005 * 109.47003 * 306.04475 * 3 2 1 30 30 H 1.08994 * 109.47043 * 270.02915 * 9 8 7 31 31 H 1.09002 * 109.46568 * 30.03258 * 9 8 7 32 32 H 1.08996 * 109.46599 * 150.02880 * 9 8 7 33 33 H 1.08994 * 109.46989 * 173.95724 * 10 2 1 34 34 H 1.09000 * 109.47199 * 53.95313 * 10 2 1 35 35 H 1.07998 * 119.87355 * 0.02562 * 12 11 10 36 36 H 1.08008 * 120.12380 * 179.73700 * 13 12 11 37 37 H 0.97001 * 120.00110 * 179.97438 * 18 17 15 38 38 H 1.08004 * 120.12753 * 180.02562 * 23 14 13 39 39 H 1.08003 * 119.88271 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 7 0.5564 2.7472 1.5440 6 7 0.6158 3.1557 2.7645 7 7 1.7100 2.7410 3.3014 8 7 2.3670 2.0538 2.4292 9 6 3.6641 1.4035 2.6315 10 6 1.9954 -0.7660 -1.1376 11 6 1.6368 -2.2205 -0.9728 12 6 2.4976 -3.0685 -0.2930 13 6 2.1828 -4.3995 -0.1412 14 6 0.9769 -4.8964 -0.6692 15 6 0.6400 -6.2608 -0.5139 16 1 1.0590 -6.8310 0.3022 17 6 -0.2363 -6.8725 -1.4174 18 7 -0.4702 -6.3181 -2.5790 19 14 -1.0721 -8.4806 -0.9648 20 1 -1.8948 -8.2844 0.2559 21 1 -1.9447 -8.9171 -2.0841 22 1 -0.0419 -9.5182 -0.7059 23 6 0.1084 -4.0253 -1.3526 24 6 0.4460 -2.6991 -1.4971 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3634 0.5740 0.8524 27 1 -0.3633 0.4513 -0.9233 28 1 3.0797 1.3443 -0.1083 29 1 1.5611 1.9273 -0.8310 30 1 4.4629 2.0967 2.3684 31 1 3.7652 1.1122 3.6769 32 1 3.7288 0.5178 1.9995 33 1 3.0797 -0.6612 -1.1756 34 1 1.5611 -0.3873 -2.0628 35 1 3.4203 -2.6838 0.1156 36 1 2.8568 -5.0593 0.3850 37 1 -1.0773 -6.7423 -3.2055 38 1 -0.8199 -4.3960 -1.7616 39 1 -0.2192 -2.0285 -2.0209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343586645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:36 Heat of formation + Delta-G solvation = 143.054666 kcal Electronic energy + Delta-G solvation = -21941.283596 eV Core-core repulsion = 18693.539410 eV Total energy + Delta-G solvation = -3247.744186 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 5.94 seconds Orbital eigenvalues (eV) -44.18933 -38.37428 -36.81188 -35.67175 -33.88342 -32.71258 -30.44273 -29.39294 -28.76747 -27.62590 -27.25303 -24.72281 -23.46559 -22.62034 -21.32178 -20.91441 -19.83840 -17.48957 -17.39532 -17.34360 -15.73837 -15.42129 -15.32300 -15.14493 -14.23192 -14.03212 -13.89321 -13.80948 -13.43548 -13.09159 -12.56633 -12.51626 -12.38159 -12.02323 -11.88089 -11.71198 -11.44388 -11.39126 -11.18082 -11.07057 -10.97325 -10.88627 -10.62787 -10.48672 -10.13485 -9.66599 -9.44557 -9.17808 -8.28903 -7.50029 -7.37243 -6.82423 -4.41139 1.16032 1.94099 2.17916 2.68786 3.01689 3.03593 3.05231 3.13782 3.82180 3.88445 4.09308 4.25026 4.56609 4.65166 4.69233 5.00991 5.14824 5.25007 5.38761 5.44220 5.63096 5.65879 5.67336 5.84687 5.94578 6.06399 6.12138 6.27310 6.31768 6.37783 6.87208 7.00715 7.05221 7.13576 7.24809 7.31690 7.55096 7.80672 7.99522 8.05845 8.24187 8.57448 8.58024 8.83721 8.91604 10.11843 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.029652 B = 0.003225 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.055739 B = 8679.223860 C = 8732.179184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.533 5.533 3 C 0.128 3.872 4 C 0.203 3.797 5 N -0.304 5.304 6 N -0.080 5.080 7 N -0.102 5.102 8 N -0.299 5.299 9 C 0.079 3.921 10 C 0.122 3.878 11 C -0.214 4.214 12 C -0.068 4.068 13 C -0.231 4.231 14 C 0.114 3.886 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.077 3.923 18 N -0.791 5.791 19 Si 0.908 3.092 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.166 4.166 24 C -0.091 4.091 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.281 0.719 38 H 0.117 0.883 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.115 10.757 3.084 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.259 5.259 3 C -0.003 4.003 4 C -0.075 4.075 5 N -0.154 5.154 6 N -0.074 5.074 7 N -0.088 5.088 8 N -0.101 5.101 9 C -0.063 4.063 10 C -0.003 4.003 11 C -0.216 4.216 12 C -0.086 4.086 13 C -0.250 4.250 14 C 0.112 3.888 15 C -0.492 4.492 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.416 5.416 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.186 4.186 24 C -0.110 4.110 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.311 11.280 4.106 13.562 hybrid contribution 0.041 -0.984 -0.984 1.392 sum 6.352 10.297 3.122 12.494 Atomic orbital electron populations 1.22463 0.86348 1.03566 1.00082 1.62230 1.09333 1.08695 1.45606 1.20567 1.01293 0.90492 0.87981 1.25991 0.89517 0.99343 0.92678 1.75017 1.18191 1.13194 1.09007 1.78583 1.10257 1.17640 1.00921 1.78841 1.03112 1.09544 1.17293 1.48322 1.18732 1.34669 1.08384 1.22439 0.78325 0.98945 1.06580 1.20779 0.98322 0.92046 0.89163 1.18733 0.99207 0.92441 1.11191 1.20274 0.97205 0.93533 0.97630 1.20952 0.98418 0.94954 1.10698 1.17619 0.89424 0.93012 0.88768 1.19597 1.23400 0.95411 1.10769 0.90480 1.25916 0.95013 0.99461 0.93763 1.69813 1.28206 1.38606 1.04984 0.86375 0.79766 0.81400 0.79262 1.18782 1.20304 1.18978 1.21291 1.00737 0.91722 1.04830 1.20527 0.95424 0.95542 0.99484 0.89630 0.92070 0.95442 0.88341 0.90712 0.88735 0.87596 0.86780 0.91432 0.94993 0.89624 0.89157 0.90759 0.86553 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.95 60.07 0.54 0.90 16 2 N -0.53 -7.42 4.74 -245.82 -1.17 -8.59 16 3 C 0.13 1.38 5.10 -4.98 -0.03 1.36 16 4 C 0.20 2.61 6.74 -155.43 -1.05 1.56 16 5 N -0.30 -4.73 11.57 32.70 0.38 -4.36 16 6 N -0.08 -1.31 13.43 60.35 0.81 -0.49 16 7 N -0.10 -1.46 13.29 60.35 0.80 -0.66 16 8 N -0.30 -3.48 3.75 -65.03 -0.24 -3.72 16 9 C 0.08 0.51 11.09 59.85 0.66 1.17 16 10 C 0.12 1.82 5.11 -4.97 -0.03 1.79 16 11 C -0.21 -4.18 4.91 -104.32 -0.51 -4.69 16 12 C -0.07 -1.39 9.67 -39.66 -0.38 -1.77 16 13 C -0.23 -5.38 9.80 -38.88 -0.38 -5.76 16 14 C 0.11 2.94 5.57 -106.83 -0.60 2.34 16 15 C -0.46 -11.96 9.05 -37.74 -0.34 -12.30 16 16 H 0.08 1.92 7.91 -52.48 -0.41 1.51 16 17 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 18 N -0.79 -19.91 10.95 55.55 0.61 -19.30 16 19 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 C -0.17 -4.14 8.70 -38.87 -0.34 -4.47 16 24 C -0.09 -1.97 7.92 -39.66 -0.31 -2.28 16 25 H 0.09 1.51 6.16 -51.93 -0.32 1.19 16 26 H 0.06 0.97 6.56 -51.93 -0.34 0.63 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.10 0.76 7.60 -51.93 -0.39 0.36 16 29 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.68 7.75 -51.93 -0.40 0.28 16 33 H 0.07 0.86 7.87 -51.93 -0.41 0.46 16 34 H 0.03 0.46 8.06 -51.93 -0.42 0.05 16 35 H 0.09 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.09 2.00 8.06 -52.48 -0.42 1.58 16 37 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 38 H 0.12 3.03 6.16 -52.48 -0.32 2.70 16 39 H 0.08 1.67 8.02 -52.48 -0.42 1.24 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -29.64 329.45 -6.84 -36.48 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.11 Total: 2.82 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.85 Total: -20.38 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 1.19 Total: -37.12 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.64 -6.84 -36.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343586645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.539 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.94 seconds