Wall clock time and date at job start Tue Mar 31 2020 02:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00130 * 2 1 4 4 C 1.50697 * 109.47384 * 66.04296 * 3 2 1 5 5 N 1.31071 * 126.66064 * 269.69056 * 4 3 2 6 6 N 1.28848 * 107.99026 * 179.89425 * 5 4 3 7 7 N 1.28746 * 109.39500 * 0.37326 * 6 5 4 8 8 N 1.29025 * 108.80873 * 359.76618 * 7 6 5 9 9 C 1.46500 * 126.43655 * 179.97438 * 8 7 6 10 10 C 1.46903 * 110.99857 * 236.04449 * 2 1 3 11 11 C 1.50707 * 109.47031 * 293.95569 * 10 2 1 12 12 C 1.38635 * 119.74865 * 270.25602 * 11 10 2 13 13 C 1.37613 * 120.24483 * 180.26071 * 12 11 10 14 14 C 1.40709 * 119.74954 * 359.46596 * 13 12 11 15 15 C 1.41391 * 120.24881 * 180.29949 * 14 13 12 16 16 H 1.08006 * 120.00159 * 24.38124 * 15 14 13 17 17 C 1.39949 * 120.00394 * 204.37955 * 15 14 13 18 18 N 1.30826 * 119.99793 * 17.83971 * 17 15 14 19 19 Si 1.86793 * 120.00334 * 197.84214 * 17 15 14 20 20 H 1.48504 * 109.47163 * 59.99946 * 19 17 15 21 21 H 1.48493 * 109.47398 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47268 * 300.00028 * 19 17 15 23 23 C 1.40717 * 119.50871 * 0.27696 * 14 13 12 24 24 C 1.37615 * 119.74803 * 359.97438 * 23 14 13 25 25 H 1.08998 * 109.47432 * 183.95111 * 1 2 3 26 26 H 1.08999 * 109.47259 * 303.95917 * 1 2 3 27 27 H 1.09004 * 109.47016 * 63.95375 * 1 2 3 28 28 H 1.08996 * 109.47121 * 186.04877 * 3 2 1 29 29 H 1.09005 * 109.47003 * 306.04475 * 3 2 1 30 30 H 1.08994 * 109.47043 * 270.02915 * 9 8 7 31 31 H 1.09002 * 109.46568 * 30.03258 * 9 8 7 32 32 H 1.08996 * 109.46599 * 150.02880 * 9 8 7 33 33 H 1.08994 * 109.46989 * 173.95724 * 10 2 1 34 34 H 1.09000 * 109.47199 * 53.95313 * 10 2 1 35 35 H 1.07998 * 119.87355 * 0.02562 * 12 11 10 36 36 H 1.08008 * 120.12380 * 179.73700 * 13 12 11 37 37 H 0.97001 * 120.00110 * 179.97438 * 18 17 15 38 38 H 1.08004 * 120.12753 * 180.02562 * 23 14 13 39 39 H 1.08003 * 119.88271 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 7 0.5564 2.7472 1.5440 6 7 0.6158 3.1557 2.7645 7 7 1.7100 2.7410 3.3014 8 7 2.3670 2.0538 2.4292 9 6 3.6641 1.4035 2.6315 10 6 1.9954 -0.7660 -1.1376 11 6 1.6368 -2.2205 -0.9728 12 6 2.4976 -3.0685 -0.2930 13 6 2.1828 -4.3995 -0.1412 14 6 0.9769 -4.8964 -0.6692 15 6 0.6400 -6.2608 -0.5139 16 1 1.0590 -6.8310 0.3022 17 6 -0.2363 -6.8725 -1.4174 18 7 -0.4702 -6.3181 -2.5790 19 14 -1.0721 -8.4806 -0.9648 20 1 -1.8948 -8.2844 0.2559 21 1 -1.9447 -8.9171 -2.0841 22 1 -0.0419 -9.5182 -0.7059 23 6 0.1084 -4.0253 -1.3526 24 6 0.4460 -2.6991 -1.4971 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3634 0.5740 0.8524 27 1 -0.3633 0.4513 -0.9233 28 1 3.0797 1.3443 -0.1083 29 1 1.5611 1.9273 -0.8310 30 1 4.4629 2.0967 2.3684 31 1 3.7652 1.1122 3.6769 32 1 3.7288 0.5178 1.9995 33 1 3.0797 -0.6612 -1.1756 34 1 1.5611 -0.3873 -2.0628 35 1 3.4203 -2.6838 0.1156 36 1 2.8568 -5.0593 0.3850 37 1 -1.0773 -6.7423 -3.2055 38 1 -0.8199 -4.3960 -1.7616 39 1 -0.2192 -2.0285 -2.0209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343586645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:31 Heat of formation + Delta-G solvation = 123.754293 kcal Electronic energy + Delta-G solvation = -21942.120523 eV Core-core repulsion = 18693.539410 eV Total energy + Delta-G solvation = -3248.581113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.144 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -45.18671 -39.84055 -38.19375 -36.57957 -35.57169 -33.87615 -32.01230 -31.13381 -29.59659 -28.73230 -28.60666 -26.22801 -24.47635 -23.88293 -22.78328 -22.27078 -21.40151 -19.18189 -18.35963 -18.31062 -17.19995 -16.80666 -16.39125 -16.30612 -15.78239 -15.42374 -15.18142 -14.68647 -14.50666 -14.36370 -14.10290 -13.76389 -13.42967 -13.38351 -13.28224 -12.96812 -12.88774 -12.68880 -12.67244 -12.38645 -12.29588 -12.20666 -12.06828 -11.78395 -11.39856 -11.19839 -11.12111 -10.96852 -9.43977 -9.23601 -9.12527 -8.62036 -6.30440 0.20019 0.95487 1.12960 1.20272 1.23084 1.37243 1.47646 1.53716 2.20448 2.67188 2.94620 3.23132 3.32013 3.83135 3.94746 4.17274 4.26335 4.32512 4.36495 4.41702 4.48805 4.57023 4.59639 4.66637 4.73097 4.77542 4.81944 4.90238 5.10247 5.11274 5.18652 5.25313 5.42934 5.53101 5.75847 5.90907 5.97489 6.11464 6.16373 6.33228 6.45465 6.76239 6.98418 7.09819 7.54168 8.34259 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.029652 B = 0.003225 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.055739 B = 8679.223860 C = 8732.179184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.538 5.538 3 C 0.132 3.868 4 C 0.202 3.798 5 N -0.332 5.332 6 N -0.115 5.115 7 N -0.111 5.111 8 N -0.289 5.289 9 C 0.064 3.936 10 C 0.128 3.872 11 C -0.195 4.195 12 C -0.067 4.067 13 C -0.247 4.247 14 C 0.079 3.921 15 C -0.506 4.506 16 H 0.072 0.928 17 C 0.036 3.964 18 N -0.826 5.826 19 Si 0.977 3.023 20 H -0.264 1.264 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.195 4.195 24 C -0.094 4.094 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.286 0.714 38 H 0.093 0.907 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.380 12.082 2.974 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.263 5.263 3 C 0.002 3.998 4 C -0.077 4.077 5 N -0.183 5.183 6 N -0.109 5.109 7 N -0.098 5.098 8 N -0.091 5.091 9 C -0.075 4.075 10 C 0.002 3.998 11 C -0.196 4.196 12 C -0.085 4.085 13 C -0.267 4.267 14 C 0.077 3.923 15 C -0.536 4.536 16 H 0.090 0.910 17 C -0.178 4.178 18 N -0.452 5.452 19 Si 0.798 3.202 20 H -0.188 1.188 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.214 4.214 24 C -0.113 4.113 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.161 0.839 29 H 0.104 0.896 30 H 0.146 0.854 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.123 0.877 34 H 0.060 0.940 35 H 0.144 0.856 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.603 12.612 4.004 15.784 hybrid contribution -0.518 -1.204 -0.913 1.598 sum 8.086 11.408 3.091 14.320 Atomic orbital electron populations 1.22296 0.87754 1.01535 1.00183 1.62016 1.08135 1.10967 1.45173 1.20775 1.03763 0.88202 0.87069 1.26273 0.88971 0.98922 0.93523 1.74922 1.19915 1.14366 1.09084 1.78557 1.11470 1.19259 1.01580 1.78753 1.03035 1.09995 1.18026 1.48704 1.19543 1.33416 1.07433 1.22963 0.76779 1.00007 1.07704 1.20760 1.00668 0.88594 0.89793 1.19268 0.97213 0.95319 1.07821 1.20688 0.98671 0.92320 0.96853 1.21193 0.97861 0.96731 1.10913 1.17952 0.90772 0.93469 0.90155 1.19825 1.25803 0.96202 1.11766 0.91027 1.26686 0.95083 1.02766 0.93279 1.69871 1.29132 1.40332 1.05843 0.85334 0.78702 0.77233 0.78952 1.18848 1.19213 1.18292 1.21235 1.00405 0.93347 1.06450 1.20773 0.96696 0.94460 0.99382 0.92500 0.93009 0.94517 0.83939 0.89625 0.85398 0.86746 0.85505 0.87656 0.93995 0.85589 0.88909 0.90306 0.88941 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 8.95 127.69 1.14 2.03 16 2 N -0.54 -12.78 4.74 -931.65 -4.42 -17.20 16 3 C 0.13 2.22 5.10 85.56 0.44 2.66 16 4 C 0.20 4.57 6.74 138.13 0.93 5.51 16 5 N -0.33 -9.93 11.57 -50.45 -0.58 -10.51 16 6 N -0.12 -3.68 13.43 37.01 0.50 -3.18 16 7 N -0.11 -3.03 13.29 37.02 0.49 -2.54 16 8 N -0.29 -5.84 3.75 -359.65 -1.35 -7.18 16 9 C 0.06 0.55 11.09 127.77 1.42 1.96 16 10 C 0.13 3.16 5.11 85.56 0.44 3.60 16 11 C -0.19 -7.08 4.91 -19.67 -0.10 -7.18 16 12 C -0.07 -2.56 9.67 22.22 0.21 -2.34 16 13 C -0.25 -11.55 9.80 22.73 0.22 -11.33 16 14 C 0.08 4.19 5.57 -21.29 -0.12 4.07 16 15 C -0.51 -27.45 9.05 23.46 0.21 -27.23 16 16 H 0.07 3.76 7.91 -2.91 -0.02 3.74 16 17 C 0.04 1.85 5.14 85.26 0.44 2.29 16 18 N -0.83 -43.36 10.95 21.83 0.24 -43.12 16 19 Si 0.98 38.58 29.59 68.60 2.03 40.61 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 23 C -0.19 -10.04 8.70 22.73 0.20 -9.85 16 24 C -0.09 -4.05 7.92 22.22 0.18 -3.87 16 25 H 0.06 1.96 6.16 -2.39 -0.01 1.95 16 26 H 0.05 1.60 6.56 -2.39 -0.02 1.58 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 28 H 0.14 1.19 7.60 -2.39 -0.02 1.17 16 29 H 0.09 1.35 8.12 -2.38 -0.02 1.33 16 30 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.13 0.82 7.75 -2.39 -0.02 0.80 16 33 H 0.11 1.93 7.87 -2.39 -0.02 1.91 16 34 H 0.04 1.00 8.06 -2.39 -0.02 0.99 16 35 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.09 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 38 H 0.09 5.11 6.16 -2.91 -0.02 5.09 16 39 H 0.10 3.85 8.02 -2.91 -0.02 3.82 16 Total: -1.00 -69.20 329.45 3.58 -65.62 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 1.06 Total: 17.19 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 5.61 Total: -39.68 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -5.12 Total: -83.73 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -69.20 3.58 -65.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343586645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.372 kcal (2) G-P(sol) polarization free energy of solvation -69.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds