Wall clock time and date at job start Tue Mar 31 2020 03:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00307 * 2 1 4 4 H 1.48501 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47456 * 300.00659 * 3 2 1 6 6 H 1.48506 * 109.47145 * 60.00715 * 3 2 1 7 7 C 1.38951 * 119.99484 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99849 * 179.97438 * 7 2 1 9 9 N 1.37088 * 120.00392 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00485 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99576 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00417 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34782 * 119.99712 * 180.02562 * 13 12 10 15 15 O 1.21648 * 120.00410 * 359.97438 * 14 13 12 16 16 C 1.47080 * 119.99449 * 179.97438 * 14 13 12 17 17 C 1.36055 * 127.14665 * 0.08031 * 16 14 13 18 18 O 1.33808 * 109.85344 * 180.02562 * 17 16 14 19 19 C 1.34910 * 111.34932 * 359.93891 * 18 17 16 20 20 C 1.38965 * 133.11767 * 180.02562 * 19 18 17 21 21 C 1.37845 * 119.97415 * 179.97438 * 20 19 18 22 22 C 1.38679 * 120.65690 * 0.02562 * 21 20 19 23 23 C 1.37846 * 120.20117 * 359.97438 * 22 21 20 24 24 C 1.39114 * 119.62699 * 0.02562 * 23 22 21 25 25 H 0.97007 * 119.99484 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00359 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47634 * 59.99907 * 12 10 9 28 28 H 1.09007 * 109.46943 * 299.99823 * 12 10 9 29 29 H 0.96992 * 120.00041 * 359.97438 * 13 12 10 30 30 H 1.07997 * 125.06879 * 359.96167 * 17 16 14 31 31 H 1.07996 * 120.01384 * 0.22498 * 20 19 18 32 32 H 1.07997 * 119.66934 * 179.97438 * 21 20 19 33 33 H 1.08002 * 119.90078 * 179.97438 * 22 21 20 34 34 H 1.08003 * 120.18833 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8896 2.3963 1.2126 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2435 -4.8629 -0.0011 13 7 2.1955 -5.9765 -0.0004 14 6 1.7461 -7.2472 -0.0013 15 8 0.5501 -7.4695 -0.0022 16 6 2.7019 -8.3651 -0.0011 17 6 4.0601 -8.2848 0.0014 18 8 4.5880 -9.5144 0.0001 19 6 3.6272 -10.4614 -0.0019 20 6 3.6627 -11.8506 -0.0033 21 6 2.4867 -12.5697 -0.0048 22 6 1.2611 -11.9207 -0.0054 23 6 1.2058 -10.5434 -0.0040 24 6 2.3865 -9.8077 -0.0025 25 1 -0.4850 0.8402 0.0004 26 1 0.3533 -2.3907 -0.0005 27 1 0.6172 -4.9205 -0.8913 28 1 0.6165 -4.9208 0.8887 29 1 3.1491 -5.7993 0.0000 30 1 4.6274 -7.3659 0.0031 31 1 4.6114 -12.3667 0.0008 32 1 2.5201 -13.6491 -0.0063 33 1 0.3472 -12.4962 -0.0070 34 1 0.2512 -10.0382 -0.0041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344177200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:39 Heat of formation + Delta-G solvation = -44.700824 kcal Electronic energy + Delta-G solvation = -21068.762215 eV Core-core repulsion = 17547.031832 eV Total energy + Delta-G solvation = -3521.730382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.75319 -39.43311 -38.13404 -38.02524 -34.52363 -33.77312 -33.01026 -31.42715 -30.62069 -29.80553 -27.63848 -24.79683 -23.77617 -22.84299 -22.40733 -20.05419 -19.60084 -18.32504 -17.91930 -17.53059 -16.47723 -16.19900 -15.99282 -15.45772 -15.27101 -15.21226 -14.52017 -14.34237 -14.03847 -13.85473 -13.80007 -13.30117 -12.95858 -12.50533 -12.25485 -12.12482 -12.02034 -11.67044 -11.18218 -11.17361 -10.43837 -10.36236 -10.31110 -9.95843 -9.68844 -8.92991 -8.88394 -8.69291 -8.42664 -8.14511 -6.55369 -3.97488 0.58668 1.09537 1.62459 2.43940 3.07494 3.18139 3.22166 3.24716 3.28965 3.60699 3.69892 4.07915 4.21816 4.42953 4.62847 4.76266 4.81452 5.06018 5.13318 5.13957 5.18408 5.25822 5.58303 5.86297 5.90606 5.93017 5.98494 6.01560 6.17362 6.26047 6.37531 6.56539 6.84692 7.42618 7.70349 7.87763 8.33235 8.40914 9.00506 9.34700 9.82013 10.61488 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.046176 B = 0.002773 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.225425 B =10096.192141 C =10687.272414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.599 6.599 12 C 0.110 3.890 13 N -0.703 5.703 14 C 0.585 3.415 15 O -0.541 6.541 16 C -0.224 4.224 17 C 0.069 3.931 18 O -0.183 6.183 19 C 0.044 3.956 20 C -0.107 4.107 21 C -0.096 4.096 22 C -0.135 4.135 23 C -0.059 4.059 24 C -0.091 4.091 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.408 0.592 30 H 0.221 0.779 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 -20.598 0.002 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.486 6.486 12 C -0.017 4.017 13 N -0.356 5.356 14 C 0.372 3.628 15 O -0.420 6.420 16 C -0.228 4.228 17 C 0.001 3.999 18 O -0.083 6.083 19 C -0.003 4.003 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.153 4.153 23 C -0.077 4.077 24 C -0.092 4.092 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.246 0.754 30 H 0.237 0.763 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.262 -20.614 0.002 21.050 hybrid contribution 0.105 1.190 0.000 1.194 sum 4.367 -19.424 0.002 19.909 Atomic orbital electron populations 1.69625 1.06037 1.28495 1.49198 1.25341 0.95678 0.99995 0.96721 0.85750 0.79674 0.80756 0.77862 1.19113 1.20583 1.20579 1.19781 0.93496 0.81944 1.48233 0.87579 1.41799 1.09530 1.04482 1.62383 1.19703 0.88273 0.84959 0.85762 1.90487 1.13699 1.86823 1.57591 1.20980 0.91749 0.85469 1.03520 1.45522 1.11514 1.04371 1.74239 1.17024 0.87402 0.81573 0.76785 1.90767 1.15811 1.84754 1.50704 1.21004 0.93465 0.93246 1.15093 1.24638 0.92880 0.86688 0.95701 1.83860 1.35435 1.14000 1.74970 1.19614 0.85617 0.90768 1.04260 1.19918 0.99797 0.87913 1.04910 1.20936 0.91263 0.99909 0.99248 1.21120 0.98154 0.93961 1.02084 1.20756 0.97592 0.93243 0.96152 1.19442 0.94147 0.91047 1.04600 0.91583 0.76990 0.89572 0.89580 0.75400 0.76255 0.84938 0.84709 0.85093 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 13.05 55.50 0.72 -22.89 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.28 29.55 -169.99 -5.02 15.25 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.31 -8.16 9.68 -14.94 -0.14 -8.31 16 8 H 0.11 2.96 7.16 -52.48 -0.38 2.58 16 9 N -0.55 -13.33 5.29 -10.96 -0.06 -13.39 16 10 C 0.43 9.55 7.85 -10.99 -0.09 9.47 16 11 O -0.60 -14.83 15.24 5.54 0.08 -14.75 16 12 C 0.11 1.99 6.15 -5.19 -0.03 1.96 16 13 N -0.70 -11.50 5.52 -62.67 -0.35 -11.84 16 14 C 0.59 9.65 7.80 -12.67 -0.10 9.55 16 15 O -0.54 -10.36 16.28 5.24 0.09 -10.28 16 16 C -0.22 -3.15 6.31 -103.25 -0.65 -3.80 16 17 C 0.07 0.78 11.52 29.95 0.34 1.12 16 18 O -0.18 -2.15 10.53 5.33 0.06 -2.10 16 19 C 0.04 0.53 7.39 -38.56 -0.28 0.25 16 20 C -0.11 -1.01 10.06 -39.46 -0.40 -1.41 16 21 C -0.10 -0.79 10.01 -39.56 -0.40 -1.18 16 22 C -0.14 -1.27 10.04 -39.56 -0.40 -1.67 16 23 C -0.06 -0.74 9.88 -39.40 -0.39 -1.13 16 24 C -0.09 -1.25 6.29 -104.97 -0.66 -1.91 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 26 H 0.40 9.29 7.90 -40.82 -0.32 8.96 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.41 6.25 6.36 -40.82 -0.26 5.99 16 30 H 0.22 1.71 7.41 -52.49 -0.39 1.33 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.14 1.80 7.54 -52.48 -0.40 1.41 16 LS Contribution 310.39 15.07 4.68 4.68 Total: -1.00 -32.20 310.39 -6.08 -38.27 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -2.99 Total: 13.52 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -3.29 Total: 3.51 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.32 Total: -48.12 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: 0.23 Total: -27.12 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.20 -6.08 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344177200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.426 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds