Wall clock time and date at job start Tue Mar 31 2020 03:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00307 * 2 1 4 4 H 1.48501 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47456 * 300.00659 * 3 2 1 6 6 H 1.48506 * 109.47145 * 60.00715 * 3 2 1 7 7 C 1.38951 * 119.99484 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99849 * 179.97438 * 7 2 1 9 9 N 1.37088 * 120.00392 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00485 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99576 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00417 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34782 * 119.99712 * 180.02562 * 13 12 10 15 15 O 1.21648 * 120.00410 * 359.97438 * 14 13 12 16 16 C 1.47080 * 119.99449 * 179.97438 * 14 13 12 17 17 C 1.36055 * 127.14665 * 0.08031 * 16 14 13 18 18 O 1.33808 * 109.85344 * 180.02562 * 17 16 14 19 19 C 1.34910 * 111.34932 * 359.93891 * 18 17 16 20 20 C 1.38965 * 133.11767 * 180.02562 * 19 18 17 21 21 C 1.37845 * 119.97415 * 179.97438 * 20 19 18 22 22 C 1.38679 * 120.65690 * 0.02562 * 21 20 19 23 23 C 1.37846 * 120.20117 * 359.97438 * 22 21 20 24 24 C 1.39114 * 119.62699 * 0.02562 * 23 22 21 25 25 H 0.97007 * 119.99484 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00359 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47634 * 59.99907 * 12 10 9 28 28 H 1.09007 * 109.46943 * 299.99823 * 12 10 9 29 29 H 0.96992 * 120.00041 * 359.97438 * 13 12 10 30 30 H 1.07997 * 125.06879 * 359.96167 * 17 16 14 31 31 H 1.07996 * 120.01384 * 0.22498 * 20 19 18 32 32 H 1.07997 * 119.66934 * 179.97438 * 21 20 19 33 33 H 1.08002 * 119.90078 * 179.97438 * 22 21 20 34 34 H 1.08003 * 120.18833 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8896 2.3963 1.2126 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2435 -4.8629 -0.0011 13 7 2.1955 -5.9765 -0.0004 14 6 1.7461 -7.2472 -0.0013 15 8 0.5501 -7.4695 -0.0022 16 6 2.7019 -8.3651 -0.0011 17 6 4.0601 -8.2848 0.0014 18 8 4.5880 -9.5144 0.0001 19 6 3.6272 -10.4614 -0.0019 20 6 3.6627 -11.8506 -0.0033 21 6 2.4867 -12.5697 -0.0048 22 6 1.2611 -11.9207 -0.0054 23 6 1.2058 -10.5434 -0.0040 24 6 2.3865 -9.8077 -0.0025 25 1 -0.4850 0.8402 0.0004 26 1 0.3533 -2.3907 -0.0005 27 1 0.6172 -4.9205 -0.8913 28 1 0.6165 -4.9208 0.8887 29 1 3.1491 -5.7993 0.0000 30 1 4.6274 -7.3659 0.0031 31 1 4.6114 -12.3667 0.0008 32 1 2.5201 -13.6491 -0.0063 33 1 0.3472 -12.4962 -0.0070 34 1 0.2512 -10.0382 -0.0041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344177200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:37 Heat of formation + Delta-G solvation = -67.543129 kcal Electronic energy + Delta-G solvation = -21069.752731 eV Core-core repulsion = 17547.031832 eV Total energy + Delta-G solvation = -3522.720899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.64539 -40.90899 -39.80229 -38.85047 -36.27932 -35.38884 -33.98371 -33.37411 -31.43127 -30.75637 -29.11731 -26.59363 -24.75388 -23.92566 -23.22071 -21.44684 -21.16274 -20.09161 -19.20585 -18.39385 -17.60789 -17.41544 -17.11360 -16.83287 -16.67978 -16.55794 -16.21169 -15.64738 -15.40239 -15.22395 -14.84054 -14.56939 -14.03465 -13.73990 -13.65258 -13.55404 -13.29473 -12.92310 -12.86095 -12.45141 -12.11276 -11.98927 -11.58785 -11.29460 -11.25481 -10.58334 -10.31304 -10.10316 -9.69588 -9.29969 -8.52117 -6.02229 -0.27966 0.27744 0.67177 1.34662 1.42986 1.56401 1.58862 1.88110 1.90603 2.13066 2.30175 2.74156 3.08899 3.15334 3.37102 3.45292 3.78597 4.04032 4.14044 4.23974 4.34171 4.37802 4.39717 4.43826 4.52925 4.79169 5.07756 5.15975 5.22264 5.37982 5.38115 5.49438 5.56996 5.90538 6.02201 6.40236 6.47478 7.01900 7.04503 7.42670 7.92127 8.65039 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.046176 B = 0.002773 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.225425 B =10096.192141 C =10687.272414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.622 6.622 12 C 0.122 3.878 13 N -0.700 5.700 14 C 0.589 3.411 15 O -0.575 6.575 16 C -0.263 4.263 17 C 0.098 3.902 18 O -0.181 6.181 19 C 0.024 3.976 20 C -0.103 4.103 21 C -0.088 4.088 22 C -0.125 4.125 23 C -0.093 4.093 24 C -0.119 4.119 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.414 0.586 30 H 0.252 0.748 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.157 0.843 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.320 -22.207 0.003 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.106 0.894 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.510 6.510 12 C -0.005 4.005 13 N -0.354 5.354 14 C 0.378 3.622 15 O -0.457 6.457 16 C -0.268 4.268 17 C 0.029 3.971 18 O -0.080 6.080 19 C -0.022 4.022 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.142 4.142 23 C -0.111 4.111 24 C -0.121 4.121 25 H 0.089 0.911 26 H 0.233 0.767 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.253 0.747 30 H 0.268 0.732 31 H 0.180 0.820 32 H 0.194 0.806 33 H 0.175 0.825 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.403 -22.247 0.002 22.894 hybrid contribution -0.229 1.528 0.000 1.545 sum 5.174 -20.719 0.003 21.355 Atomic orbital electron populations 1.69690 1.07051 1.29591 1.49341 1.26144 0.96532 1.02746 0.95796 0.84804 0.78185 0.76693 0.78265 1.19302 1.19703 1.19693 1.19782 0.93003 0.83443 1.50231 0.89403 1.41848 1.09634 1.04629 1.63316 1.20324 0.88118 0.85773 0.83661 1.90463 1.14985 1.87497 1.58060 1.20805 0.91598 0.83663 1.04477 1.45458 1.11462 1.04017 1.74478 1.17320 0.87408 0.81808 0.75629 1.90739 1.17362 1.85171 1.52410 1.20880 0.94252 0.92896 1.18730 1.25150 0.92090 0.87474 0.92341 1.83871 1.35399 1.14099 1.74675 1.20003 0.84886 0.91805 1.05525 1.20428 1.01665 0.86815 1.03215 1.21438 0.90074 1.01838 0.97165 1.21492 1.00106 0.92773 0.99872 1.20807 0.96625 0.94797 0.98852 1.19706 0.95403 0.91126 1.05823 0.91073 0.76702 0.88597 0.88601 0.74720 0.73219 0.82047 0.80611 0.82504 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.44 13.05 21.66 0.28 -48.16 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 1.00 41.35 29.55 68.60 2.03 43.38 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.34 -18.22 9.68 84.04 0.81 -17.41 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -27.69 5.29 -306.98 -1.62 -29.32 16 10 C 0.43 19.61 7.85 87.66 0.69 20.30 16 11 O -0.62 -31.04 15.24 -3.07 -0.05 -31.09 16 12 C 0.12 4.43 6.15 85.63 0.53 4.95 16 13 N -0.70 -22.97 5.52 -470.42 -2.60 -25.57 16 14 C 0.59 19.84 7.80 86.56 0.68 20.52 16 15 O -0.58 -22.85 16.28 -4.18 -0.07 -22.92 16 16 C -0.26 -7.48 6.31 -18.97 -0.12 -7.60 16 17 C 0.10 2.11 11.52 67.31 0.78 2.88 16 18 O -0.18 -4.00 10.53 -3.86 -0.04 -4.04 16 19 C 0.02 0.55 7.39 22.93 0.17 0.72 16 20 C -0.10 -1.64 10.06 22.35 0.22 -1.42 16 21 C -0.09 -1.14 10.01 22.28 0.22 -0.91 16 22 C -0.12 -2.11 10.04 22.28 0.22 -1.89 16 23 C -0.09 -2.34 9.88 22.39 0.22 -2.12 16 24 C -0.12 -3.29 6.29 -20.09 -0.13 -3.42 16 25 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 26 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 27 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 28 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 29 H 0.41 12.54 6.36 -92.71 -0.59 11.95 16 30 H 0.25 3.44 7.41 -2.91 -0.02 3.42 16 31 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.12 3.35 7.54 -2.91 -0.02 3.33 16 Total: -1.00 -70.74 310.39 2.55 -68.19 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: -0.14 Total: 35.06 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 4.76 Total: 14.46 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -3.94 Total: -103.04 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -0.16 Total: -58.05 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -70.74 2.55 -68.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344177200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.647 kcal (2) G-P(sol) polarization free energy of solvation -70.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds