Wall clock time and date at job start Tue Mar 31 2020 03:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86806 * 119.99519 * 2 1 4 4 H 1.48498 * 109.47348 * 269.99850 * 3 2 1 5 5 H 1.48501 * 109.47206 * 30.00104 * 3 2 1 6 6 H 1.48503 * 109.47101 * 149.99532 * 3 2 1 7 7 C 1.40045 * 120.00505 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99939 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00362 * 179.97438 * 9 7 2 12 12 C 1.46497 * 120.00361 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47100 * 179.97438 * 12 11 9 14 14 N 1.46497 * 109.47100 * 180.02562 * 13 12 11 15 15 C 1.34527 * 124.46173 * 269.97804 * 14 13 12 16 16 O 1.21445 * 125.70798 * 0.03494 * 15 14 13 17 17 C 1.47815 * 108.57968 * 180.02562 * 15 14 13 18 18 C 1.38565 * 134.29113 * 180.02562 * 17 15 14 19 19 C 1.38612 * 119.71975 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.45518 * 0.02900 * 19 18 17 21 21 C 1.38604 * 120.46148 * 359.95875 * 20 19 18 22 22 C 1.38570 * 119.72412 * 0.02562 * 21 20 19 23 23 C 1.34527 * 124.46351 * 89.99811 * 14 13 12 24 24 O 1.21449 * 125.70270 * 0.02562 * 23 14 13 25 25 H 0.97001 * 120.00451 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99542 * 0.02562 * 11 9 7 27 27 H 1.09004 * 109.46932 * 59.99983 * 12 11 9 28 28 H 1.08999 * 109.46994 * 300.00150 * 12 11 9 29 29 H 1.09004 * 109.47148 * 60.00231 * 13 12 11 30 30 H 1.08999 * 109.47414 * 300.00008 * 13 12 11 31 31 H 1.08008 * 120.14186 * 359.68328 * 18 17 15 32 32 H 1.08000 * 119.77048 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.76600 * 179.97438 * 20 19 18 34 34 H 1.07996 * 120.14014 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4881 2.0466 -1.4000 5 1 1.4380 2.6527 0.7001 6 1 3.5382 1.4404 0.7002 7 6 2.0071 -1.2128 0.0005 8 1 3.0870 -1.2126 0.0010 9 6 1.2753 -2.4804 0.0005 10 8 0.0584 -2.4805 0.0005 11 7 1.9492 -3.6476 0.0005 12 6 1.2168 -4.9164 0.0011 13 6 2.2111 -6.0792 0.0003 14 7 1.4787 -7.3479 0.0003 15 6 1.0990 -8.0078 1.1094 16 8 1.3053 -7.6512 2.2519 17 6 0.3885 -9.2392 0.7049 18 6 -0.2121 -10.2805 1.3940 19 6 -0.8098 -11.3151 0.6915 20 6 -0.8100 -11.3150 -0.6909 21 6 -0.2134 -10.2799 -1.3935 22 6 0.3878 -9.2387 -0.7046 23 6 1.0976 -8.0069 -1.1089 24 8 1.3035 -7.6499 -2.2513 25 1 -0.4851 0.8400 -0.0004 26 1 2.9192 -3.6475 0.0009 27 1 0.5898 -4.9743 -0.8887 28 1 0.5905 -4.9739 0.8913 29 1 2.8384 -6.0214 0.8899 30 1 2.8371 -6.0214 -0.8901 31 1 -0.2104 -10.2884 2.4741 32 1 -1.2778 -12.1274 1.2278 33 1 -1.2786 -12.1270 -1.2271 34 1 -0.2169 -10.2849 -2.4735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355618498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:06 Heat of formation + Delta-G solvation = -52.770390 kcal Electronic energy + Delta-G solvation = -21448.992127 eV Core-core repulsion = 17926.911822 eV Total energy + Delta-G solvation = -3522.080305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.44780 -38.80631 -38.70266 -37.34931 -35.98370 -34.01772 -32.48040 -31.77719 -31.49719 -28.79167 -26.26205 -25.29711 -24.17581 -22.41031 -22.18497 -20.06466 -19.73281 -18.00497 -17.56734 -17.16868 -16.72860 -16.17613 -15.50917 -15.30439 -14.92173 -14.67044 -14.38981 -14.35957 -14.30216 -14.06016 -13.78209 -13.14199 -12.70204 -12.46589 -12.29533 -12.04902 -11.84243 -11.17699 -11.14996 -10.79354 -10.70324 -10.46684 -10.40725 -10.23241 -9.87280 -9.58943 -9.53143 -8.84807 -7.64497 -7.57875 -6.18520 -4.64280 -0.20179 0.61104 1.78035 2.18366 2.82540 3.15597 3.22050 3.25730 3.26248 3.38715 4.07616 4.12535 4.25948 4.48145 4.58950 4.68490 4.82315 4.84983 4.93365 5.10327 5.19882 5.38016 5.42175 5.55362 5.58169 5.73680 5.77411 5.80226 6.19739 6.28139 6.43731 6.63087 7.08136 7.43837 7.54086 7.88557 8.02334 8.30856 9.02407 9.49501 10.59562 10.77438 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.036072 B = 0.003103 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.036251 B = 9022.268870 C = 9187.051506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.579 6.579 11 N -0.764 5.764 12 C 0.120 3.880 13 C 0.102 3.898 14 N -0.570 5.570 15 C 0.572 3.428 16 O -0.456 6.456 17 C -0.136 4.136 18 C -0.046 4.046 19 C -0.098 4.098 20 C -0.098 4.098 21 C -0.046 4.046 22 C -0.136 4.136 23 C 0.572 3.428 24 O -0.456 6.456 25 H 0.269 0.731 26 H 0.382 0.618 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -24.021 0.000 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.461 6.461 11 N -0.421 5.421 12 C -0.006 4.006 13 C -0.018 4.018 14 N -0.312 5.312 15 C 0.361 3.639 16 O -0.327 6.327 17 C -0.140 4.140 18 C -0.065 4.065 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.065 4.065 22 C -0.140 4.140 23 C 0.361 3.639 24 O -0.327 6.327 25 H 0.079 0.921 26 H 0.213 0.787 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.501 -23.426 0.005 23.431 hybrid contribution 0.887 0.844 -0.008 1.224 sum 1.388 -22.582 -0.003 22.625 Atomic orbital electron populations 1.70024 1.07097 1.27327 1.35186 1.25725 0.94643 1.00361 0.92611 0.86338 0.80110 0.81265 0.78822 1.19724 1.20454 1.18881 1.20854 0.93618 0.89169 1.54410 0.91265 1.18254 0.87233 0.82229 0.76343 1.90607 1.14122 1.86645 1.54772 1.46027 1.08576 1.04282 1.83204 1.21091 0.94091 0.83804 1.01607 1.22030 0.94791 0.79842 1.05166 1.46475 1.53238 1.23346 1.08174 1.18370 0.77792 0.83450 0.84298 1.90830 1.52155 1.70427 1.19271 1.20622 1.02128 0.96710 0.94518 1.20819 0.93692 0.91024 1.00979 1.21460 0.97758 0.98005 0.94413 1.21458 0.97753 0.98016 0.94413 1.20816 0.93694 0.91020 1.00981 1.20620 1.02148 0.96690 0.94517 1.18368 0.77793 0.83448 0.84296 1.90831 1.52175 1.70403 1.19277 0.92061 0.78670 0.92743 0.92740 0.88150 0.88154 0.83987 0.84116 0.84117 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.49 11.83 55.55 0.66 -22.83 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.42 29.56 -169.99 -5.02 15.39 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.54 -15.61 9.54 -35.63 -0.34 -15.95 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.56 16.28 7.75 -12.99 -0.10 16.18 16 10 O -0.58 -19.42 15.02 5.20 0.08 -19.34 16 11 N -0.76 -17.56 5.55 -61.72 -0.34 -17.91 16 12 C 0.12 2.46 6.00 -4.04 -0.02 2.43 16 13 C 0.10 1.56 5.86 -4.04 -0.02 1.54 16 14 N -0.57 -8.37 2.62 -117.62 -0.31 -8.68 16 15 C 0.57 8.18 8.02 -12.46 -0.10 8.08 16 16 O -0.46 -7.62 17.68 5.41 0.10 -7.52 16 17 C -0.14 -1.52 6.40 -104.83 -0.67 -2.20 16 18 C -0.05 -0.37 10.09 -39.32 -0.40 -0.77 16 19 C -0.10 -0.54 10.04 -39.45 -0.40 -0.94 16 20 C -0.10 -0.54 10.04 -39.45 -0.40 -0.94 16 21 C -0.05 -0.37 10.09 -39.32 -0.40 -0.77 16 22 C -0.14 -1.52 6.41 -104.84 -0.67 -2.20 16 23 C 0.57 8.18 8.02 -12.46 -0.10 8.08 16 24 O -0.46 -7.62 17.68 5.41 0.10 -7.52 16 25 H 0.27 7.43 8.29 -40.82 -0.34 7.10 16 26 H 0.38 7.44 8.45 -40.82 -0.35 7.10 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.10 1.41 7.97 -51.93 -0.41 0.99 16 30 H 0.10 1.41 7.96 -51.93 -0.41 0.99 16 31 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 33 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 314.04 15.07 4.73 4.73 Total: -1.00 -38.38 314.04 -6.98 -45.36 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -3.25 Total: 3.40 kcal Atomic # 6 Polarization: 18.64 SS G_CDS: -3.71 Total: 14.92 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.01 Total: -49.42 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: 0.27 Total: -34.39 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -38.38 -6.98 -45.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355618498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.410 kcal (2) G-P(sol) polarization free energy of solvation -38.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds