Wall clock time and date at job start Tue Mar 31 2020 03:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99997 * 2 1 4 4 H 1.48499 * 109.47315 * 270.00603 * 3 2 1 5 5 H 1.48494 * 109.47185 * 30.00692 * 3 2 1 6 6 H 1.48502 * 109.46755 * 150.00751 * 3 2 1 7 7 C 1.37884 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99587 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00003 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47076 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.46876 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54633 * 68.37787 * 11 10 9 13 13 O 1.42101 * 110.53984 * 291.61946 * 11 10 9 14 14 N 1.65603 * 104.44526 * 179.97438 * 11 10 9 15 15 C 1.46497 * 120.00217 * 65.00476 * 14 11 10 16 16 C 1.50698 * 109.47657 * 164.99987 * 15 14 11 17 17 C 1.38232 * 119.59260 * 94.99267 * 16 15 14 18 18 C 1.38596 * 119.18886 * 180.02562 * 17 16 15 19 19 C 1.38879 * 118.39652 * 0.25621 * 18 17 16 20 20 F 1.35106 * 120.44068 * 179.74732 * 19 18 17 21 21 C 1.38422 * 119.11596 * 359.51901 * 19 18 17 22 22 N 1.31848 * 119.58665 * 275.02099 * 16 15 14 23 23 H 0.96997 * 120.00322 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46938 * 60.00129 * 9 7 2 25 25 H 1.08997 * 109.46757 * 299.99955 * 9 7 2 26 26 H 1.08999 * 109.46898 * 59.99785 * 10 9 7 27 27 H 1.08999 * 109.46678 * 299.99788 * 10 9 7 28 28 H 0.97002 * 120.00159 * 244.99218 * 14 11 10 29 29 H 1.09002 * 109.47537 * 44.99335 * 15 14 11 30 30 H 1.09004 * 109.46651 * 284.99490 * 15 14 11 31 31 H 1.08002 * 120.40687 * 0.02599 * 17 16 15 32 32 H 1.08002 * 120.79700 * 179.97438 * 18 17 16 33 33 H 1.07999 * 119.63454 * 180.20814 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3382 -5.2331 0.0002 12 8 0.6638 -5.4201 -1.2365 13 8 0.6647 -5.4193 1.2376 14 7 2.5204 -6.3927 -0.0006 15 6 3.4196 -6.5229 1.1487 16 6 4.1396 -7.8447 1.0760 17 6 5.3956 -7.9072 0.5021 18 6 6.0501 -9.1273 0.4392 19 6 5.4104 -10.2472 0.9544 20 9 6.0083 -11.4580 0.9101 21 6 4.1542 -10.1056 1.5183 22 7 3.5635 -8.9273 1.5602 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6043 0.8894 27 1 2.8718 -3.6043 -0.8906 28 1 2.6174 -6.9859 -0.7619 29 1 2.8402 -6.4749 2.0707 30 1 4.1473 -5.7115 1.1342 31 1 5.8613 -7.0162 0.1075 32 1 7.0318 -9.2060 -0.0039 33 1 3.6506 -10.9703 1.9245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357167966.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:28 Heat of formation + Delta-G solvation = -90.751351 kcal Electronic energy + Delta-G solvation = -19778.495103 eV Core-core repulsion = 16266.751467 eV Total energy + Delta-G solvation = -3511.743637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.073 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.38974 -40.58055 -36.62282 -35.59276 -35.34383 -33.91035 -32.93512 -31.21071 -31.17760 -26.36301 -25.62207 -24.33304 -22.53478 -21.68926 -19.03005 -18.11777 -17.72476 -17.63676 -17.05912 -16.33957 -16.14898 -15.71422 -15.42102 -14.75092 -14.56468 -14.46420 -14.37162 -13.74239 -13.66647 -13.28990 -13.19841 -12.56061 -12.46315 -11.77208 -11.60489 -11.57516 -11.50914 -11.09746 -10.97730 -10.44300 -10.40239 -10.38617 -9.98285 -9.84349 -9.56639 -9.33739 -9.06286 -8.51804 -6.13848 -4.19656 0.35102 0.65093 0.81679 2.95774 3.24906 3.31318 3.33507 3.36578 3.54337 3.82588 4.14827 4.25061 4.30873 4.36942 4.40546 4.71618 4.86329 5.13343 5.16939 5.21425 5.40129 5.41736 5.52110 5.59521 5.64558 5.83890 6.15442 6.45900 6.98460 7.28870 7.34910 7.43426 7.78829 8.15635 8.83793 9.45213 10.97185 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030833 B = 0.003227 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.913176 B = 8673.461037 C = 9261.376977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.593 3.407 12 O -0.965 6.965 13 O -0.962 6.962 14 N -1.122 6.122 15 C 0.167 3.833 16 C 0.111 3.889 17 C -0.126 4.126 18 C -0.110 4.110 19 C 0.048 3.952 20 F -0.130 7.130 21 C 0.077 3.923 22 N -0.438 5.438 23 H 0.265 0.735 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.413 0.587 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.545 -17.968 1.377 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.690 3.310 12 O -0.955 6.955 13 O -0.952 6.952 14 N -0.879 5.879 15 C 0.040 3.960 16 C -0.028 4.028 17 C -0.147 4.147 18 C -0.136 4.136 19 C 0.026 3.974 20 F -0.109 7.109 21 C -0.082 4.082 22 N -0.147 5.147 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.246 0.754 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.602 -17.901 1.934 21.419 hybrid contribution 2.154 0.568 -0.756 2.352 sum 13.755 -17.334 1.177 22.160 Atomic orbital electron populations 1.69950 1.06125 1.27234 1.49479 1.25072 0.94969 0.99555 0.94904 0.86467 0.79696 0.82878 0.78214 1.20493 1.21018 1.19760 1.21000 0.93048 0.89763 1.52246 0.92023 1.18973 0.92723 0.90515 0.98992 1.30455 1.13760 1.17940 1.10109 1.05624 0.74601 0.76516 0.74215 1.93559 1.71329 1.85324 1.45303 1.93553 1.71168 1.84860 1.45577 1.55828 1.52897 1.52454 1.26714 1.20110 0.93164 0.91805 0.90904 1.21319 0.92065 0.94513 0.94914 1.22037 0.95277 0.98581 0.98768 1.21703 1.01345 0.91522 0.99044 1.18899 0.94251 0.81487 1.02770 1.91536 1.83237 1.41667 1.94455 1.22988 0.91081 0.96639 0.97499 1.67611 1.34519 0.97941 1.14586 0.92500 0.94794 0.94726 0.86213 0.86001 0.75449 0.88019 0.89561 0.83039 0.83245 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.52 -14.06 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 10 C -0.59 -10.54 6.01 37.16 0.22 -10.32 16 11 S 2.59 44.53 5.46 -107.50 -0.59 43.94 16 12 O -0.96 -19.63 18.08 -57.54 -1.04 -20.67 16 13 O -0.96 -19.61 17.50 -57.54 -1.01 -20.62 16 14 N -1.12 -13.87 5.88 -11.66 -0.07 -13.94 16 15 C 0.17 1.76 6.44 -5.20 -0.03 1.72 16 16 C 0.11 1.10 6.18 -82.59 -0.51 0.59 16 17 C -0.13 -0.92 9.72 -39.45 -0.38 -1.31 16 18 C -0.11 -0.76 10.16 -39.21 -0.40 -1.16 16 19 C 0.05 0.40 7.35 -39.28 -0.29 0.11 16 20 F -0.13 -1.12 17.28 2.25 0.04 -1.08 16 21 C 0.08 0.70 11.17 -17.47 -0.20 0.50 16 22 N -0.44 -4.92 10.27 -9.42 -0.10 -5.01 16 23 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.12 1.85 8.14 -51.92 -0.42 1.42 16 27 H 0.12 1.92 8.14 -51.92 -0.42 1.50 16 28 H 0.41 4.47 8.61 -34.48 -0.30 4.18 16 29 H 0.10 1.18 7.70 -51.93 -0.40 0.78 16 30 H 0.09 0.64 8.04 -51.93 -0.42 0.23 16 31 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -35.76 312.32 -8.09 -43.84 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.61 Total: 0.66 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -2.14 Total: -22.20 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.57 Total: -44.40 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -2.05 Total: -41.29 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 44.53 SS G_CDS: -0.59 Total: 43.94 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.76 -8.09 -43.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357167966.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.907 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds