Wall clock time and date at job start Tue Mar 31 2020 04:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 119.99525 * 2 1 4 4 O 1.21283 * 120.00463 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99675 * 179.72583 * 3 2 1 6 6 H 1.09002 * 109.51515 * 55.37946 * 5 3 2 7 7 C 1.53301 * 109.51382 * 295.27603 * 5 3 2 8 8 N 1.47143 * 108.38461 * 187.77552 * 7 5 3 9 9 C 1.34781 * 120.98257 * 230.51197 * 8 7 5 10 10 O 1.21282 * 119.99805 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00402 * 180.02562 * 9 8 7 12 12 S 1.80991 * 109.47256 * 180.02562 * 11 9 8 13 13 C 1.76200 * 99.99905 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99750 * 179.97438 * 13 12 11 16 16 N 1.31633 * 119.99632 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00096 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47061 * 90.00005 * 17 15 13 19 19 H 1.48499 * 109.46882 * 209.99729 * 17 15 13 20 20 H 1.48498 * 109.47071 * 329.99542 * 17 15 13 21 21 C 1.47152 * 118.03944 * 50.53865 * 8 7 5 22 22 C 1.53299 * 108.38188 * 309.46324 * 21 8 7 23 23 O 1.42958 * 109.22386 * 52.30234 * 22 21 8 24 24 H 1.09008 * 109.47102 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47421 * 299.99467 * 1 2 3 26 26 H 1.09001 * 109.47621 * 60.00103 * 1 2 3 27 27 H 0.97000 * 120.00580 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.67870 * 307.49916 * 7 5 3 29 29 H 1.09001 * 109.67874 * 68.01399 * 7 5 3 30 30 H 1.09007 * 109.46771 * 300.00391 * 11 9 8 31 31 H 1.08995 * 109.46637 * 59.99494 * 11 9 8 32 32 H 0.96993 * 120.00047 * 180.02562 * 16 15 13 33 33 H 1.08994 * 109.68332 * 69.18331 * 21 8 7 34 34 H 1.09004 * 109.68451 * 189.70610 * 21 8 7 35 35 H 1.08997 * 109.51466 * 172.22768 * 22 21 8 36 36 H 1.09005 * 109.51207 * 292.32773 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 0.0005 5 6 3.6457 1.1673 0.0062 6 1 4.0134 0.5816 -0.8363 7 6 4.1524 0.5535 1.3164 8 7 5.6112 0.7350 1.3804 9 6 6.4283 -0.3023 1.6503 10 8 5.9637 -1.4056 1.8444 11 6 7.9192 -0.0912 1.7110 12 16 8.7360 -1.6614 2.0896 13 6 10.4181 -1.1369 2.0986 14 1 10.6625 -0.1033 1.9032 15 6 11.4291 -2.0524 2.3569 16 7 12.6857 -1.6606 2.3631 17 14 11.0063 -3.8403 2.6942 18 1 10.9897 -4.5948 1.4152 19 1 12.0248 -4.4270 3.6018 20 1 9.6685 -3.9205 3.3337 21 6 6.1517 2.0827 1.1415 22 6 5.5476 2.6221 -0.1602 23 8 4.1237 2.5106 -0.0999 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.9501 -0.8400 -0.0004 28 1 3.6826 1.0550 2.1625 29 1 3.9128 -0.5096 1.3406 30 1 8.2732 0.2794 0.7489 31 1 8.1517 0.6365 2.4885 32 1 13.3922 -2.3003 2.5433 33 1 5.8832 2.7381 1.9699 34 1 7.2367 2.0323 1.0500 35 1 5.8259 3.6685 -0.2845 36 1 5.9236 2.0427 -1.0035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378619525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:01 Heat of formation + Delta-G solvation = -104.153621 kcal Electronic energy + Delta-G solvation = -20673.326048 eV Core-core repulsion = 17284.461550 eV Total energy + Delta-G solvation = -3388.864498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80667 -39.51709 -38.09777 -35.09664 -34.70605 -32.49934 -32.37504 -29.75536 -28.51707 -26.55951 -25.67220 -24.65954 -22.75691 -20.82022 -19.57303 -18.18689 -17.59291 -17.20596 -16.92327 -16.33219 -15.71063 -15.63989 -15.34903 -15.01824 -14.84917 -14.78763 -13.95647 -13.78893 -13.66665 -13.29905 -12.91009 -12.86347 -12.64310 -12.33998 -12.22306 -11.89577 -11.32348 -11.17942 -11.06427 -10.69722 -10.48561 -10.15978 -9.91715 -9.64438 -9.52414 -9.06486 -8.74926 -8.58133 -7.00247 -6.34785 -4.07665 2.16977 2.47240 2.53752 2.74096 3.02015 3.27900 3.44816 3.49488 3.65989 4.24697 4.27613 4.37928 4.45012 4.57925 4.70769 4.86033 4.88498 4.93221 5.04067 5.04891 5.14785 5.24227 5.38244 5.43139 5.45115 5.58776 5.63182 5.87105 5.96348 6.19701 6.62577 7.06554 7.20384 7.83393 7.88111 8.21225 8.35394 9.11079 10.74417 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.032179 B = 0.003539 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.928414 B = 7910.432248 C = 8634.586632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.733 5.733 3 C 0.524 3.476 4 O -0.515 6.515 5 C 0.061 3.939 6 H 0.091 0.909 7 C 0.093 3.907 8 N -0.621 5.621 9 C 0.537 3.463 10 O -0.515 6.515 11 C -0.123 4.123 12 S -0.141 6.141 13 C -0.522 4.522 14 H 0.089 0.911 15 C 0.096 3.904 16 N -0.879 5.879 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.070 3.930 22 C 0.047 3.953 23 O -0.352 6.352 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.406 0.594 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.271 0.729 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.510 5.533 -5.391 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.387 5.387 3 C 0.308 3.692 4 O -0.389 6.389 5 C -0.002 4.002 6 H 0.109 0.891 7 C -0.031 4.031 8 N -0.359 5.359 9 C 0.325 3.675 10 O -0.389 6.389 11 C -0.273 4.273 12 S 0.086 5.914 13 C -0.670 4.670 14 H 0.107 0.893 15 C -0.113 4.113 16 N -0.515 5.515 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.053 4.053 22 C -0.031 4.031 23 O -0.269 6.269 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.240 0.760 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.566 4.785 -5.074 21.717 hybrid contribution 1.172 -0.017 -0.091 1.175 sum -19.395 4.768 -5.166 20.629 Atomic orbital electron populations 1.21569 0.78835 1.02566 1.02513 1.45721 1.08094 1.08495 1.76377 1.20007 0.88612 0.84063 0.76502 1.90737 1.69693 1.31118 1.47303 1.22280 0.91999 0.86626 0.99269 0.89137 1.22034 0.81378 1.03219 0.96427 1.48102 1.05726 1.09248 1.72803 1.20379 0.88486 0.83447 0.75139 1.90692 1.76884 1.23557 1.47772 1.23313 0.92791 1.05495 1.05700 1.84801 1.04546 1.09181 1.92898 1.22291 0.88571 0.99849 1.56285 0.89330 1.24715 0.94030 0.99149 0.93379 1.69932 0.99004 1.35690 1.46915 0.86736 0.80754 0.84540 0.79828 1.19181 1.19877 1.15937 1.22521 1.00686 0.83456 0.98668 1.23121 0.80355 1.03051 0.96542 1.88073 1.21181 1.23238 1.94448 0.90268 0.91984 0.92068 0.76006 0.90260 0.87526 0.88362 0.88248 0.91863 0.90070 0.87744 0.86722 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.70 59.85 0.64 1.20 16 2 N -0.73 -5.70 5.67 -67.08 -0.38 -6.08 16 3 C 0.52 5.90 7.18 -10.98 -0.08 5.82 16 4 O -0.51 -7.87 16.51 -14.28 -0.24 -8.11 16 5 C 0.06 0.64 3.19 -27.73 -0.09 0.56 16 6 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 7 C 0.09 1.04 5.88 -3.54 -0.02 1.02 16 8 N -0.62 -7.96 3.02 -172.28 -0.52 -8.48 16 9 C 0.54 9.04 7.73 -10.98 -0.08 8.96 16 10 O -0.51 -10.30 15.33 5.56 0.09 -10.21 16 11 C -0.12 -2.24 4.53 36.01 0.16 -2.08 16 12 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 13 C -0.52 -14.59 10.04 30.94 0.31 -14.28 16 14 H 0.09 2.57 8.03 -52.48 -0.42 2.15 16 15 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 16 N -0.88 -26.00 13.97 55.49 0.78 -25.22 16 17 Si 0.86 21.23 27.74 -169.99 -4.72 16.51 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 21 C 0.07 0.70 6.54 -3.53 -0.02 0.68 16 22 C 0.05 0.43 6.98 37.31 0.26 0.69 16 23 O -0.35 -4.22 9.92 -55.07 -0.55 -4.77 16 24 H 0.08 0.28 8.14 -51.92 -0.42 -0.15 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.41 2.23 8.83 -40.82 -0.36 1.87 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.11 1.17 7.08 -51.93 -0.37 0.80 16 30 H 0.10 1.64 7.66 -51.91 -0.40 1.24 16 31 H 0.10 1.70 8.01 -51.92 -0.42 1.28 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.98 6.05 -51.93 -0.31 0.66 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 319.05 15.07 4.81 4.81 Total: -1.00 -36.21 319.05 -6.56 -42.77 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.81 Total: -1.01 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 0.98 Total: 5.22 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.13 Total: -39.79 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.70 Total: -23.09 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.72 Total: 16.51 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.21 -6.56 -42.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378619525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.385 kcal (2) G-P(sol) polarization free energy of solvation -36.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds