Wall clock time and date at job start Tue Mar 31 2020 02:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.50699 * 110.27502 * 302.08444 * 4 3 2 6 6 O 1.20827 * 120.00265 * 239.30706 * 5 4 3 7 7 O 1.34234 * 119.99695 * 59.30074 * 5 4 3 8 8 C 1.54594 * 110.31146 * 64.28364 * 4 3 2 9 9 C 1.54936 * 102.92258 * 96.95681 * 8 4 3 10 10 N 1.48541 * 103.22675 * 37.41514 * 9 8 4 11 11 C 1.46900 * 110.99605 * 200.27939 * 10 9 8 12 12 C 1.52995 * 109.47072 * 287.39117 * 11 10 9 13 13 O 1.42904 * 109.47131 * 65.00494 * 12 11 10 14 14 C 1.42899 * 114.00065 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46731 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00341 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99828 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00063 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00067 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47130 * 59.99932 * 19 17 15 21 21 H 1.48504 * 109.46865 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46752 * 299.99809 * 19 17 15 23 23 C 1.47897 * 105.81827 * 320.79435 * 10 9 8 24 24 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 25 25 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 27 27 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 28 28 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 29 29 H 0.96702 * 116.99616 * 180.02562 * 7 5 4 30 30 H 1.09005 * 110.72368 * 215.31437 * 8 4 3 31 31 H 1.08995 * 110.72400 * 338.59781 * 8 4 3 32 32 H 1.09000 * 110.66825 * 278.98226 * 9 8 4 33 33 H 1.09002 * 110.81274 * 155.91349 * 9 8 4 34 34 H 1.08992 * 109.47388 * 47.39962 * 11 10 9 35 35 H 1.09004 * 109.46285 * 167.39524 * 11 10 9 36 36 H 1.09002 * 109.46931 * 185.00500 * 12 11 10 37 37 H 1.09002 * 109.47340 * 305.00663 * 12 11 10 38 38 H 1.08992 * 109.47447 * 300.00252 * 14 13 12 39 39 H 1.08997 * 109.47029 * 60.00700 * 14 13 12 40 40 H 0.96997 * 120.00356 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.91588 * 265.97604 * 23 10 9 42 42 H 1.09000 * 110.08273 * 144.77764 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9971 0.3947 1.1967 6 8 4.7498 0.8964 1.9978 7 8 3.5721 -0.8662 1.3733 8 6 4.0201 0.5154 -1.3072 9 6 4.4083 1.7258 -2.1931 10 7 5.0083 2.6780 -1.2237 11 6 5.0020 4.0465 -1.7575 12 6 6.0524 4.1675 -2.8633 13 8 5.6855 3.3313 -3.9625 14 6 6.6051 3.3712 -5.0555 15 6 6.1221 2.4570 -6.1518 16 1 5.2044 1.9015 -6.0267 17 6 6.8518 2.3298 -7.3148 18 7 7.9696 3.0059 -7.4670 19 14 6.2528 1.1972 -8.6741 20 1 4.9147 1.6444 -9.1373 21 1 7.2093 1.2376 -9.8094 22 1 6.1588 -0.1913 -8.1559 23 6 4.1822 2.5822 -0.0007 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8952 -1.3328 2.1564 30 1 4.8870 -0.1177 -1.1177 31 1 3.2159 -0.0578 -1.7683 32 1 3.5245 2.1591 -2.6612 33 1 5.1384 1.4346 -2.9483 34 1 4.0170 4.2728 -2.1657 35 1 5.2339 4.7496 -0.9574 36 1 6.1100 5.2033 -3.1980 37 1 7.0232 3.8557 -2.4779 38 1 6.6738 4.3904 -5.4356 39 1 7.5875 3.0431 -4.7158 40 1 8.4828 2.9167 -8.2853 41 1 3.4082 3.3497 -0.0143 42 1 4.8079 2.7019 0.8839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385164657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:14 Heat of formation + Delta-G solvation = -200.620213 kcal Electronic energy + Delta-G solvation = -23786.015862 eV Core-core repulsion = 20151.474393 eV Total energy + Delta-G solvation = -3634.541469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.91986 -39.89234 -38.76259 -38.03902 -37.03155 -35.04315 -34.15983 -30.95786 -30.15258 -28.73963 -27.69152 -25.79998 -24.86949 -24.50829 -23.32194 -21.83742 -20.73468 -18.96956 -18.59429 -18.23117 -17.43763 -17.33252 -17.15182 -16.82973 -16.46952 -16.26515 -15.90222 -15.65556 -15.07201 -14.98434 -14.80676 -14.29494 -13.92979 -13.51950 -13.44099 -13.32287 -13.03127 -12.92633 -12.78055 -12.58456 -12.50087 -12.46676 -12.30247 -12.16593 -12.10958 -11.80706 -11.68722 -11.40820 -11.21880 -10.82371 -10.60038 -10.15745 -9.38286 -8.29444 -6.41448 1.15423 1.41241 1.45845 1.54007 2.04507 2.36175 2.59705 3.00917 3.04803 3.24328 3.42347 3.52570 3.80300 4.04606 4.19256 4.27977 4.30720 4.35303 4.41026 4.50749 4.54645 4.57922 4.62409 4.64667 4.73605 4.85764 4.88782 4.92776 4.96521 5.00151 5.06977 5.21849 5.27304 5.57428 5.59521 5.90379 5.99152 6.04600 6.18551 6.56933 6.85311 7.02762 7.30463 8.82850 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.003782 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.539967 B = 7400.880105 C = 8073.965359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.079 3.921 4 C -0.059 4.059 5 C 0.504 3.496 6 O -0.544 6.544 7 O -0.491 6.491 8 C -0.096 4.096 9 C 0.050 3.950 10 N -0.528 5.528 11 C 0.060 3.940 12 C 0.057 3.943 13 O -0.397 6.397 14 C 0.211 3.789 15 C -0.542 4.542 16 H 0.065 0.935 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.981 3.019 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.266 1.266 23 C 0.050 3.950 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.422 0.578 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.112 0.888 36 H 0.051 0.949 37 H 0.037 0.963 38 H -0.017 1.017 39 H -0.021 1.021 40 H 0.270 0.730 41 H 0.079 0.921 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.276 -4.031 17.770 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C 0.002 3.998 4 C -0.061 4.061 5 C 0.347 3.653 6 O -0.435 6.435 7 O -0.303 6.303 8 C -0.134 4.134 9 C -0.077 4.077 10 N -0.253 5.253 11 C -0.067 4.067 12 C -0.020 4.020 13 O -0.317 6.317 14 C 0.136 3.864 15 C -0.580 4.580 16 H 0.083 0.917 17 C -0.193 4.193 18 N -0.573 5.573 19 Si 0.804 3.196 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.077 4.077 24 H 0.067 0.933 25 H 0.115 0.885 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.283 0.717 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.001 0.999 39 H -0.003 1.003 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.591 -4.059 17.633 23.244 hybrid contribution -0.124 0.051 -0.439 0.459 sum -14.715 -4.008 17.194 22.983 Atomic orbital electron populations 1.22921 0.79472 1.03866 1.00755 1.87979 1.21121 1.26516 1.95512 1.22490 0.88798 0.86140 1.02379 1.21351 0.96723 0.95479 0.92500 1.22965 0.76110 0.80654 0.85532 1.90683 1.35479 1.71278 1.46096 1.84625 1.68735 1.26231 1.50691 1.22476 1.01542 0.97282 0.92116 1.23179 0.98198 0.91880 0.94472 1.64772 1.49464 1.06646 1.04446 1.22307 0.97927 0.90444 0.96070 1.22540 0.98056 0.93869 0.87571 1.87825 1.50159 1.66578 1.27129 1.19750 0.87744 0.94741 0.84160 1.21345 1.09322 1.26578 1.00741 0.91716 1.25951 0.94700 0.97650 1.00954 1.70073 1.15921 1.42933 1.28331 0.85270 0.78377 0.78784 0.77214 1.18854 1.20286 1.19031 1.22909 0.96585 0.93036 0.95210 0.93343 0.88545 0.93097 0.91163 0.90771 0.71746 0.91520 0.88401 0.93213 0.90974 0.93109 0.87042 0.93103 0.94486 0.99904 1.00314 0.92169 0.90312 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.39 -7.53 8.78 -132.28 -1.16 -8.69 16 3 C 0.08 1.41 4.55 71.98 0.33 1.74 16 4 C -0.06 -1.34 0.72 -52.05 -0.04 -1.38 16 5 C 0.50 12.18 6.83 71.24 0.49 12.66 16 6 O -0.54 -15.95 16.00 21.96 0.35 -15.60 16 7 O -0.49 -9.46 12.18 -45.67 -0.56 -10.02 16 8 C -0.10 -2.55 6.06 31.80 0.19 -2.35 16 9 C 0.05 1.60 5.33 86.65 0.46 2.06 16 10 N -0.53 -15.88 5.24 -883.01 -4.63 -20.51 16 11 C 0.06 1.72 5.27 86.30 0.45 2.17 16 12 C 0.06 2.12 6.25 71.98 0.45 2.57 16 13 O -0.40 -18.81 7.69 -148.98 -1.15 -19.96 16 14 C 0.21 11.87 5.69 71.24 0.41 12.28 16 15 C -0.54 -31.98 9.43 25.60 0.24 -31.74 16 16 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 17 C 0.01 0.33 5.46 84.66 0.46 0.79 16 18 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 19 Si 0.98 44.24 29.54 68.60 2.03 46.26 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 C 0.05 1.19 5.93 86.45 0.51 1.70 16 24 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.42 4.35 9.10 -74.06 -0.67 3.67 16 30 H 0.07 1.91 7.86 -2.38 -0.02 1.89 16 31 H 0.10 2.43 7.45 -2.39 -0.02 2.41 16 32 H 0.05 1.55 7.81 -2.39 -0.02 1.53 16 33 H 0.07 2.91 6.79 -2.39 -0.02 2.89 16 34 H 0.05 1.38 7.83 -2.39 -0.02 1.36 16 35 H 0.11 2.48 8.08 -2.38 -0.02 2.46 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 40 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.08 1.46 7.31 -2.38 -0.02 1.45 16 42 H 0.10 2.51 6.42 -2.39 -0.02 2.50 16 Total: -1.00 -72.80 344.63 0.71 -72.09 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.34 Total: 10.61 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.21 Total: 2.09 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -4.35 Total: -76.79 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -2.51 Total: -54.26 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -72.80 0.71 -72.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385164657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.533 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds