Wall clock time and date at job start Tue Mar 31 2020 02:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 113.99977 * 2 1 4 4 C 1.53003 * 109.47073 * 179.97438 * 3 2 1 5 5 C 1.50699 * 110.28612 * 60.67731 * 4 3 2 6 6 O 1.20821 * 120.00349 * 119.32608 * 5 4 3 7 7 O 1.34236 * 120.00066 * 299.32794 * 5 4 3 8 8 C 1.54259 * 110.32474 * 298.54960 * 4 3 2 9 9 C 1.54378 * 105.05930 * 241.10119 * 8 4 3 10 10 N 1.48567 * 104.59365 * 336.14765 * 9 8 4 11 11 C 1.46900 * 110.99719 * 159.03942 * 10 9 8 12 12 C 1.52999 * 109.47234 * 69.87540 * 11 10 9 13 13 O 1.42898 * 109.47177 * 64.99900 * 12 11 10 14 14 C 1.42906 * 113.99821 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46699 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00167 * 359.71972 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47474 * 90.00322 * 19 17 15 21 21 H 1.48507 * 109.46754 * 210.00056 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99887 * 19 17 15 23 23 C 1.48559 * 104.22364 * 39.48581 * 10 9 8 24 24 H 1.09001 * 109.47131 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46923 * 299.99678 * 1 2 3 26 26 H 1.08994 * 109.47246 * 59.99655 * 1 2 3 27 27 H 1.08998 * 109.47211 * 60.00461 * 3 2 1 28 28 H 1.08996 * 109.47399 * 300.00345 * 3 2 1 29 29 H 0.96693 * 117.00329 * 180.02562 * 7 5 4 30 30 H 1.08993 * 110.32287 * 122.20905 * 8 4 3 31 31 H 1.08995 * 110.32077 * 359.97438 * 8 4 3 32 32 H 1.09005 * 110.41367 * 217.37115 * 9 8 4 33 33 H 1.08997 * 110.41162 * 94.92227 * 9 8 4 34 34 H 1.09004 * 109.47620 * 309.87290 * 11 10 9 35 35 H 1.09000 * 109.47446 * 189.87116 * 11 10 9 36 36 H 1.09002 * 109.47235 * 304.99497 * 12 11 10 37 37 H 1.09000 * 109.47628 * 184.99900 * 12 11 10 38 38 H 1.09000 * 109.47490 * 59.99859 * 14 13 12 39 39 H 1.09001 * 109.47232 * 299.99213 * 14 13 12 40 40 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 41 41 H 1.08998 * 110.41547 * 79.29045 * 23 10 9 42 42 H 1.09000 * 110.41149 * 201.73961 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0022 0.4530 -1.2314 6 8 4.7382 1.0013 -2.0172 7 8 3.6001 -0.8078 -1.4561 8 6 4.0145 0.4533 1.2716 9 6 4.9123 1.4720 2.0061 10 7 5.3761 2.3984 0.9413 11 6 5.8158 3.6786 1.5121 12 6 7.1172 3.4703 2.2892 13 8 8.1545 3.0830 1.3859 14 6 9.4191 2.8615 2.0137 15 6 10.4327 2.4595 0.9734 16 1 10.1394 2.3766 -0.0627 17 6 11.7332 2.1925 1.3452 18 7 12.0891 2.2881 2.6077 19 14 12.9898 1.6948 0.0557 20 1 13.6551 2.9089 -0.4816 21 1 14.0064 0.8053 0.6726 22 1 12.3069 0.9747 -1.0489 23 6 4.1841 2.5836 0.0741 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.9259 -1.2361 -2.2594 30 1 4.5887 -0.4337 1.0043 31 1 3.1631 0.1809 1.8952 32 1 5.7614 0.9674 2.4672 33 1 4.3372 2.0135 2.7571 34 1 5.0476 4.0593 2.1852 35 1 5.9831 4.3962 0.7089 36 1 6.9740 2.6884 3.0349 37 1 7.3964 4.3994 2.7861 38 1 9.3233 2.0667 2.7534 39 1 9.7462 3.7778 2.5051 40 1 13.0040 2.0999 2.8693 41 1 3.4950 3.2990 0.5228 42 1 4.4849 2.9159 -0.9195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385164658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:18 Heat of formation + Delta-G solvation = -172.313696 kcal Electronic energy + Delta-G solvation = -23603.813191 eV Core-core repulsion = 19970.499185 eV Total energy + Delta-G solvation = -3633.314006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.87936 -38.74144 -37.85658 -36.45423 -35.92863 -33.42863 -32.48228 -29.91361 -28.79346 -27.21232 -26.51559 -24.91045 -23.81513 -22.56829 -22.18336 -20.49645 -19.77166 -17.89207 -17.24458 -16.51239 -16.41933 -16.22193 -15.91491 -15.50001 -15.26506 -14.75977 -14.71373 -14.31067 -13.86992 -13.80632 -13.50604 -13.08238 -12.77313 -12.47336 -12.19407 -12.02279 -11.81657 -11.60388 -11.47695 -11.40033 -11.32273 -11.06818 -10.87892 -10.75829 -10.63141 -10.35594 -10.33033 -9.97469 -9.91483 -9.00172 -8.72283 -8.27887 -8.05279 -6.02937 -4.03278 2.27465 2.97531 3.28582 3.36696 3.41114 3.48440 4.00311 4.32879 4.41278 4.45004 4.61613 4.85169 4.91713 4.98892 5.03246 5.07232 5.12781 5.16842 5.33619 5.34759 5.36695 5.44358 5.54490 5.67536 5.78462 5.81623 5.95835 6.01526 6.04660 6.15776 6.32041 6.57287 6.76273 6.93874 7.12733 7.20282 7.51887 7.89979 8.00033 8.25699 8.70803 9.12155 9.61375 11.08845 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.003498 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.798553 B = 8002.463724 C = 8663.489658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.076 3.924 4 C -0.052 4.052 5 C 0.496 3.504 6 O -0.500 6.500 7 O -0.501 6.501 8 C -0.101 4.101 9 C 0.026 3.974 10 N -0.487 5.487 11 C 0.051 3.949 12 C 0.069 3.931 13 O -0.379 6.379 14 C 0.194 3.806 15 C -0.509 4.509 16 H 0.067 0.933 17 C 0.054 3.946 18 N -0.902 5.902 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.047 3.953 24 H 0.087 0.913 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.404 0.596 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.039 0.961 38 H 0.003 0.997 39 H 0.002 0.998 40 H 0.263 0.737 41 H 0.054 0.946 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.533 -2.618 -2.321 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C -0.001 4.001 4 C -0.054 4.054 5 C 0.337 3.663 6 O -0.387 6.387 7 O -0.312 6.312 8 C -0.139 4.139 9 C -0.102 4.102 10 N -0.211 5.211 11 C -0.077 4.077 12 C -0.009 4.009 13 O -0.298 6.298 14 C 0.120 3.880 15 C -0.547 4.547 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.081 4.081 24 H 0.106 0.894 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.262 0.738 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.754 -2.687 -2.554 25.030 hybrid contribution 0.155 0.105 -0.261 0.321 sum -24.599 -2.582 -2.815 24.894 Atomic orbital electron populations 1.22754 0.81071 1.02931 0.99809 1.88031 1.19353 1.26309 1.95319 1.22478 0.90570 0.85870 1.01231 1.21218 0.94583 0.96515 0.93073 1.22738 0.77095 0.80008 0.86453 1.90754 1.33456 1.67830 1.46668 1.84604 1.70083 1.28429 1.48042 1.22315 0.99682 0.98623 0.93327 1.23294 0.98442 0.94685 0.93805 1.65451 1.28278 1.11499 1.15899 1.22332 0.95646 0.91083 0.98650 1.22181 0.88551 0.97859 0.92358 1.87974 1.19321 1.88886 1.33648 1.20172 0.79226 0.94660 0.93938 1.21090 0.93159 1.45497 0.94954 0.91479 1.24944 0.98279 0.95631 0.95749 1.69968 1.18651 1.49818 1.15706 0.86352 0.80510 0.78466 0.81277 1.20521 1.21164 1.19568 1.23130 0.91697 0.92008 1.01230 0.89410 0.94131 0.94202 0.91700 0.92641 0.73807 0.89923 0.89595 0.89050 0.93682 0.93966 0.89776 0.94664 0.94249 0.97966 0.98024 0.92794 0.92767 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.57 9.07 -50.69 -0.46 -4.03 16 3 C 0.08 0.68 4.54 37.16 0.17 0.84 16 4 C -0.05 -0.61 0.78 -154.27 -0.12 -0.73 16 5 C 0.50 6.85 6.74 36.01 0.24 7.09 16 6 O -0.50 -8.70 16.18 -18.75 -0.30 -9.00 16 7 O -0.50 -5.66 12.30 -44.82 -0.55 -6.21 16 8 C -0.10 -1.19 6.05 -25.35 -0.15 -1.34 16 9 C 0.03 0.34 5.74 -2.18 -0.01 0.32 16 10 N -0.49 -7.65 5.32 -229.96 -1.22 -8.87 16 11 C 0.05 0.78 5.19 -3.82 -0.02 0.76 16 12 C 0.07 1.31 6.08 37.16 0.23 1.53 16 13 O -0.38 -9.63 10.27 -35.23 -0.36 -9.99 16 14 C 0.19 5.55 5.69 36.01 0.20 5.76 16 15 C -0.51 -15.65 9.43 -34.44 -0.32 -15.98 16 16 H 0.07 2.08 7.81 -52.49 -0.41 1.67 16 17 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.74 13.29 55.43 0.74 -27.01 16 19 Si 0.91 22.70 29.54 -169.99 -5.02 17.68 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.05 0.60 5.40 -2.18 -0.01 0.59 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.40 2.98 9.10 45.56 0.41 3.39 16 30 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 31 H 0.09 0.84 7.52 -51.93 -0.39 0.45 16 32 H 0.09 1.35 7.64 -51.93 -0.40 0.95 16 33 H 0.04 0.49 7.82 -51.93 -0.41 0.09 16 34 H 0.04 0.51 7.88 -51.93 -0.41 0.10 16 35 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 36 H 0.04 0.65 7.05 -51.93 -0.37 0.28 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.05 0.53 7.70 -51.93 -0.40 0.13 16 42 H 0.10 1.51 6.86 -51.93 -0.36 1.15 16 LS Contribution 348.05 15.07 5.24 5.24 Total: -1.00 -36.78 348.05 -6.78 -43.56 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -6.06 Total: -3.06 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 1.21 Total: 1.69 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.49 Total: -35.88 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -1.68 Total: -29.23 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.78 -6.78 -43.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385164658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.751 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds