Wall clock time and date at job start Tue Mar 31 2020 02:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 113.99977 * 2 1 4 4 C 1.53003 * 109.47073 * 179.97438 * 3 2 1 5 5 C 1.50699 * 110.28612 * 60.67731 * 4 3 2 6 6 O 1.20821 * 120.00349 * 119.32608 * 5 4 3 7 7 O 1.34236 * 120.00066 * 299.32794 * 5 4 3 8 8 C 1.54259 * 110.32474 * 298.54960 * 4 3 2 9 9 C 1.54378 * 105.05930 * 241.10119 * 8 4 3 10 10 N 1.48567 * 104.59365 * 336.14765 * 9 8 4 11 11 C 1.46900 * 110.99719 * 159.03942 * 10 9 8 12 12 C 1.52999 * 109.47234 * 69.87540 * 11 10 9 13 13 O 1.42898 * 109.47177 * 64.99900 * 12 11 10 14 14 C 1.42906 * 113.99821 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46699 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00167 * 359.71972 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47474 * 90.00322 * 19 17 15 21 21 H 1.48507 * 109.46754 * 210.00056 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99887 * 19 17 15 23 23 C 1.48559 * 104.22364 * 39.48581 * 10 9 8 24 24 H 1.09001 * 109.47131 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46923 * 299.99678 * 1 2 3 26 26 H 1.08994 * 109.47246 * 59.99655 * 1 2 3 27 27 H 1.08998 * 109.47211 * 60.00461 * 3 2 1 28 28 H 1.08996 * 109.47399 * 300.00345 * 3 2 1 29 29 H 0.96693 * 117.00329 * 180.02562 * 7 5 4 30 30 H 1.08993 * 110.32287 * 122.20905 * 8 4 3 31 31 H 1.08995 * 110.32077 * 359.97438 * 8 4 3 32 32 H 1.09005 * 110.41367 * 217.37115 * 9 8 4 33 33 H 1.08997 * 110.41162 * 94.92227 * 9 8 4 34 34 H 1.09004 * 109.47620 * 309.87290 * 11 10 9 35 35 H 1.09000 * 109.47446 * 189.87116 * 11 10 9 36 36 H 1.09002 * 109.47235 * 304.99497 * 12 11 10 37 37 H 1.09000 * 109.47628 * 184.99900 * 12 11 10 38 38 H 1.09000 * 109.47490 * 59.99859 * 14 13 12 39 39 H 1.09001 * 109.47232 * 299.99213 * 14 13 12 40 40 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 41 41 H 1.08998 * 110.41547 * 79.29045 * 23 10 9 42 42 H 1.09000 * 110.41149 * 201.73961 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0022 0.4530 -1.2314 6 8 4.7382 1.0013 -2.0172 7 8 3.6001 -0.8078 -1.4561 8 6 4.0145 0.4533 1.2716 9 6 4.9123 1.4720 2.0061 10 7 5.3761 2.3984 0.9413 11 6 5.8158 3.6786 1.5121 12 6 7.1172 3.4703 2.2892 13 8 8.1545 3.0830 1.3859 14 6 9.4191 2.8615 2.0137 15 6 10.4327 2.4595 0.9734 16 1 10.1394 2.3766 -0.0627 17 6 11.7332 2.1925 1.3452 18 7 12.0891 2.2881 2.6077 19 14 12.9898 1.6948 0.0557 20 1 13.6551 2.9089 -0.4816 21 1 14.0064 0.8053 0.6726 22 1 12.3069 0.9747 -1.0489 23 6 4.1841 2.5836 0.0741 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.9259 -1.2361 -2.2594 30 1 4.5887 -0.4337 1.0043 31 1 3.1631 0.1809 1.8952 32 1 5.7614 0.9674 2.4672 33 1 4.3372 2.0135 2.7571 34 1 5.0476 4.0593 2.1852 35 1 5.9831 4.3962 0.7089 36 1 6.9740 2.6884 3.0349 37 1 7.3964 4.3994 2.7861 38 1 9.3233 2.0667 2.7534 39 1 9.7462 3.7778 2.5051 40 1 13.0040 2.0999 2.8693 41 1 3.4950 3.2990 0.5228 42 1 4.4849 2.9159 -0.9195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385164658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:17 Heat of formation + Delta-G solvation = -201.529997 kcal Electronic energy + Delta-G solvation = -23605.080105 eV Core-core repulsion = 19970.499185 eV Total energy + Delta-G solvation = -3634.580920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.88299 -39.80795 -38.74698 -38.09156 -37.00843 -35.07482 -34.23300 -30.95763 -30.19680 -28.79313 -27.57660 -25.63342 -24.93961 -24.45092 -23.70985 -21.66728 -20.73102 -18.90677 -18.62759 -18.18741 -17.51629 -17.26702 -17.10558 -16.80258 -16.42235 -16.22461 -15.88913 -15.82220 -15.18863 -14.97655 -14.81854 -14.34726 -13.88994 -13.55102 -13.42309 -13.29408 -13.16838 -12.84748 -12.77560 -12.59855 -12.51970 -12.46927 -12.33358 -12.12073 -12.11136 -11.80897 -11.68670 -11.35655 -11.25586 -10.85922 -10.56813 -10.17625 -9.32012 -8.32980 -6.44595 1.22472 1.37454 1.40680 1.53170 2.08085 2.34418 2.58644 3.00197 3.01337 3.25817 3.41777 3.56285 3.86582 4.09473 4.18883 4.20084 4.27393 4.34807 4.41839 4.50444 4.51335 4.61144 4.61740 4.64216 4.66507 4.81409 4.84140 4.91640 4.94225 4.95681 5.01851 5.09657 5.19240 5.54737 5.64235 5.90065 5.96990 6.05874 6.22766 6.57091 6.87559 7.04555 7.27790 8.79442 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.003498 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.798553 B = 8002.463724 C = 8663.489658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.081 3.919 4 C -0.051 4.051 5 C 0.494 3.506 6 O -0.547 6.547 7 O -0.496 6.496 8 C -0.094 4.094 9 C 0.027 3.973 10 N -0.532 5.532 11 C 0.060 3.940 12 C 0.057 3.943 13 O -0.400 6.400 14 C 0.211 3.789 15 C -0.548 4.548 16 H 0.055 0.945 17 C 0.007 3.993 18 N -0.930 5.930 19 Si 0.981 3.019 20 H -0.265 1.265 21 H -0.270 1.270 22 H -0.269 1.269 23 C 0.052 3.948 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.419 0.581 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.050 0.950 38 H -0.018 1.018 39 H -0.014 1.014 40 H 0.271 0.729 41 H 0.092 0.908 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.173 -2.570 -2.184 27.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.004 3.996 4 C -0.053 4.053 5 C 0.337 3.663 6 O -0.437 6.437 7 O -0.308 6.308 8 C -0.131 4.131 9 C -0.100 4.100 10 N -0.257 5.257 11 C -0.067 4.067 12 C -0.020 4.020 13 O -0.319 6.319 14 C 0.136 3.864 15 C -0.585 4.585 16 H 0.073 0.927 17 C -0.191 4.191 18 N -0.569 5.569 19 Si 0.804 3.196 20 H -0.190 1.190 21 H -0.195 1.195 22 H -0.194 1.194 23 C -0.075 4.075 24 H 0.112 0.888 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.279 0.721 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.000 1.000 39 H 0.004 0.996 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.434 -2.654 -2.406 26.676 hybrid contribution 0.583 0.047 -0.267 0.643 sum -25.852 -2.607 -2.672 26.120 Atomic orbital electron populations 1.22918 0.79399 1.03772 1.00889 1.87988 1.21167 1.26702 1.95560 1.22474 0.88104 0.86081 1.02931 1.21282 0.96790 0.95543 0.91708 1.23308 0.76052 0.80296 0.86618 1.90737 1.35625 1.68893 1.48488 1.84579 1.69637 1.27545 1.48999 1.22263 0.99956 0.97348 0.93582 1.23272 0.98015 0.94727 0.93987 1.65304 1.30804 1.12083 1.17462 1.22245 0.94463 0.91178 0.98850 1.22587 0.88622 0.98236 0.92565 1.87927 1.19306 1.89213 1.35492 1.19765 0.80720 0.92962 0.92976 1.21381 0.94793 1.47493 0.94858 0.92704 1.25935 1.00163 0.94736 0.98282 1.70060 1.19688 1.49543 1.17625 0.85216 0.77540 0.78688 0.78159 1.19032 1.19518 1.19400 1.23065 0.91354 0.93440 0.99690 0.88810 0.92582 0.93543 0.88934 0.91910 0.72063 0.92071 0.87009 0.91800 0.90572 0.89501 0.90496 0.94293 0.93186 1.00035 0.99631 0.91992 0.89000 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.40 -6.55 9.07 -134.20 -1.22 -7.77 16 3 C 0.08 1.20 4.54 71.98 0.33 1.53 16 4 C -0.05 -1.13 0.78 -52.03 -0.04 -1.17 16 5 C 0.49 13.63 6.74 71.24 0.48 14.11 16 6 O -0.55 -19.66 16.18 21.98 0.36 -19.30 16 7 O -0.50 -10.99 12.30 -46.17 -0.57 -11.55 16 8 C -0.09 -2.05 6.05 31.49 0.19 -1.86 16 9 C 0.03 0.69 5.74 86.45 0.50 1.18 16 10 N -0.53 -16.32 5.32 -881.46 -4.69 -21.01 16 11 C 0.06 1.76 5.19 86.30 0.45 2.21 16 12 C 0.06 2.19 6.08 71.98 0.44 2.62 16 13 O -0.40 -21.01 10.27 -148.98 -1.53 -22.54 16 14 C 0.21 12.54 5.69 71.24 0.41 12.94 16 15 C -0.55 -34.70 9.43 25.60 0.24 -34.46 16 16 H 0.05 3.52 7.81 -2.91 -0.02 3.49 16 17 C 0.01 0.43 5.46 84.66 0.46 0.90 16 18 N -0.93 -57.70 13.29 21.45 0.28 -57.42 16 19 Si 0.98 46.65 29.54 68.60 2.03 48.68 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 23 C 0.05 1.24 5.40 86.45 0.47 1.71 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 26 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.42 6.10 9.10 -74.06 -0.67 5.43 16 30 H 0.06 1.59 7.69 -2.39 -0.02 1.57 16 31 H 0.11 1.86 7.52 -2.39 -0.02 1.84 16 32 H 0.06 1.92 7.64 -2.38 -0.02 1.90 16 33 H 0.08 1.41 7.82 -2.39 -0.02 1.40 16 34 H 0.09 1.76 7.88 -2.39 -0.02 1.75 16 35 H 0.08 2.34 8.13 -2.39 -0.02 2.32 16 36 H 0.04 1.45 7.05 -2.39 -0.02 1.43 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 39 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.09 1.47 7.70 -2.39 -0.02 1.45 16 42 H 0.08 2.32 6.86 -2.39 -0.02 2.30 16 Total: -1.00 -81.96 348.05 0.16 -81.80 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.33 Total: 7.89 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 5.16 Total: 1.22 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -4.40 Total: -78.43 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: -2.96 Total: -61.16 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -81.96 0.16 -81.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385164658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.734 kcal (2) G-P(sol) polarization free energy of solvation -81.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds