Wall clock time and date at job start Tue Mar 31 2020 03:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00092 * 2 1 4 4 H 1.48504 * 109.46924 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47201 * 300.00272 * 3 2 1 6 6 H 1.48494 * 109.47143 * 60.00355 * 3 2 1 7 7 C 1.37884 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00125 * 173.02604 * 7 2 1 9 9 C 1.50694 * 119.99791 * 353.02661 * 7 2 1 10 10 C 1.53002 * 115.55380 * 84.78756 * 9 7 2 11 11 S 1.81396 * 109.46873 * 39.91097 * 10 9 7 12 12 O 1.42092 * 110.54447 * 62.31620 * 11 10 9 13 13 O 1.42105 * 110.54222 * 285.56337 * 11 10 9 14 14 N 1.65607 * 104.44869 * 173.94171 * 11 10 9 15 15 C 1.47266 * 121.35246 * 269.71889 * 14 11 10 16 16 C 1.52980 * 108.19085 * 118.76637 * 15 14 11 17 17 N 1.45652 * 110.77401 * 46.72294 * 16 15 14 18 18 C 1.33379 * 124.58653 * 338.10312 * 17 16 15 19 19 O 1.21281 * 118.48889 * 184.33734 * 18 17 16 20 20 C 1.47045 * 121.35171 * 89.99992 * 14 11 10 21 21 C 1.53002 * 117.51492 * 230.48740 * 9 7 2 22 22 C 1.53002 * 60.00154 * 107.48341 * 21 9 7 23 23 H 0.97007 * 120.00272 * 5.02062 * 1 2 3 24 24 H 1.09001 * 109.46651 * 279.91059 * 10 9 7 25 25 H 1.09002 * 109.47302 * 159.91364 * 10 9 7 26 26 H 1.09003 * 109.71876 * 238.44476 * 15 14 11 27 27 H 1.09009 * 109.71825 * 359.09030 * 15 14 11 28 28 H 1.09000 * 109.21745 * 286.38911 * 16 15 14 29 29 H 1.09001 * 109.18230 * 167.03389 * 16 15 14 30 30 H 0.96994 * 117.70491 * 158.11784 * 17 16 15 31 31 H 1.08998 * 109.57164 * 342.28530 * 20 14 11 32 32 H 1.08999 * 109.57112 * 102.52923 * 20 14 11 33 33 H 1.08999 * 117.49785 * 214.96708 * 21 9 7 34 34 H 1.08993 * 117.50129 * 359.97438 * 21 9 7 35 35 H 1.09001 * 117.49526 * 252.50926 * 22 21 9 36 36 H 1.08997 * 117.50290 * 107.49450 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0785 -1.1976 -0.1141 9 6 1.2593 -2.4944 0.1573 10 6 0.6802 -3.0837 -1.1304 11 16 1.8654 -2.8580 -2.4850 12 8 3.0725 -3.5566 -2.2131 13 8 1.8835 -1.5025 -2.9110 14 7 1.1973 -3.6777 -3.7595 15 6 1.4974 -5.0997 -3.9979 16 6 0.1885 -5.8861 -3.9049 17 7 -0.8643 -5.2290 -4.6672 18 6 -0.8645 -3.9374 -5.0002 19 8 -1.8363 -3.4867 -5.5689 20 6 0.2851 -3.0138 -4.7025 21 6 1.7648 -3.4745 1.2179 22 6 0.4649 -2.7011 1.4485 23 1 -0.4851 0.8369 -0.0735 24 1 -0.2525 -2.5756 -1.3751 25 1 0.4882 -4.1474 -0.9890 26 1 1.9307 -5.2227 -4.9904 27 1 2.1971 -5.4594 -3.2433 28 1 -0.1149 -5.9555 -2.8603 29 1 0.3448 -6.8897 -4.3004 30 1 -1.6182 -5.7684 -4.9526 31 1 -0.0923 -2.0927 -4.2583 32 1 0.8182 -2.7826 -5.6247 33 1 1.6847 -4.5391 0.9983 34 1 2.6367 -3.1791 1.8014 35 1 0.4816 -1.8968 2.1840 36 1 -0.4703 -3.2569 1.3807 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408190777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:35 Heat of formation + Delta-G solvation = -100.531439 kcal Electronic energy + Delta-G solvation = -22217.518975 eV Core-core repulsion = 18828.811547 eV Total energy + Delta-G solvation = -3388.707428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.18801 -38.53573 -38.06124 -37.79050 -36.72462 -35.01829 -34.10649 -31.05150 -29.88681 -27.70574 -27.29322 -24.68155 -22.94899 -21.56103 -20.68451 -19.85884 -18.92129 -18.35871 -18.09588 -17.46792 -17.01650 -16.75362 -16.47141 -16.42240 -15.62766 -15.45207 -15.01382 -14.86973 -14.31270 -13.98992 -13.78209 -13.67798 -13.48704 -13.05393 -12.97652 -12.91752 -12.85299 -12.73032 -12.43667 -12.25890 -12.09083 -11.92514 -11.65602 -11.33366 -10.86374 -10.52432 -10.23439 -10.06372 -9.83128 -8.24121 -6.41729 -0.55861 1.34076 1.39709 1.45075 1.47587 1.85700 2.27312 2.38380 3.05053 3.07624 3.27374 3.43493 3.48515 3.69603 3.97976 4.09498 4.16571 4.27205 4.40812 4.46985 4.58414 4.59907 4.67971 4.83571 4.87154 5.00323 5.01980 5.19258 5.34341 5.42406 5.62321 5.68231 5.84058 6.20102 6.20911 6.68762 7.10780 7.36630 8.82591 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.006622 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.208486 B = 4227.291909 C = 4580.258516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.057 3.943 3 Si 0.926 3.074 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.051 0.949 9 C 0.012 3.988 10 C -0.553 4.553 11 S 2.635 3.365 12 O -0.984 6.984 13 O -0.983 6.983 14 N -1.012 6.012 15 C 0.088 3.912 16 C 0.090 3.910 17 N -0.701 5.701 18 C 0.518 3.482 19 O -0.594 6.594 20 C 0.110 3.890 21 C -0.183 4.183 22 C -0.146 4.146 23 H 0.266 0.734 24 H 0.114 0.886 25 H 0.138 0.862 26 H 0.103 0.897 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.409 0.591 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 -15.112 -6.998 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.148 4.148 3 Si 0.752 3.248 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.069 0.931 9 C 0.010 3.990 10 C -0.686 4.686 11 S 2.733 3.267 12 O -0.974 6.974 13 O -0.973 6.973 14 N -0.851 5.851 15 C -0.036 4.036 16 C -0.035 4.035 17 N -0.352 5.352 18 C 0.303 3.697 19 O -0.476 6.476 20 C -0.018 4.018 21 C -0.220 4.220 22 C -0.185 4.185 23 H 0.075 0.925 24 H 0.132 0.868 25 H 0.156 0.844 26 H 0.121 0.879 27 H 0.138 0.862 28 H 0.100 0.900 29 H 0.154 0.846 30 H 0.246 0.754 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.054 -14.178 -7.195 15.899 hybrid contribution -0.588 0.993 0.273 1.186 sum -0.534 -13.185 -6.922 14.901 Atomic orbital electron populations 1.69993 1.06732 1.27858 1.47379 1.25450 0.95448 1.01540 0.92329 0.85983 0.79859 0.80982 0.77999 1.19278 1.20595 1.19351 1.20801 0.93104 0.90771 1.54683 0.93112 1.18331 1.00323 0.94153 0.86181 1.29887 1.15448 1.08557 1.14680 1.04201 0.75508 0.72620 0.74358 1.93439 1.43254 1.75045 1.85673 1.93481 1.86933 1.36334 1.80550 1.58215 1.62332 1.22095 1.42445 1.22195 0.97749 0.77666 1.06019 1.22120 0.85994 0.97814 0.97580 1.45229 1.25801 1.08850 1.55298 1.20304 0.87718 0.83946 0.77741 1.90768 1.35662 1.75666 1.45467 1.21510 0.88644 0.95291 0.96349 1.23215 0.97597 0.96967 1.04257 1.22473 0.94023 1.01141 1.00858 0.92516 0.86800 0.84360 0.87915 0.86155 0.90019 0.84576 0.75356 0.87772 0.86033 0.87517 0.90112 0.91992 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.45 12.96 21.45 0.28 -49.17 16 2 C 0.06 3.18 5.39 84.66 0.46 3.63 16 3 Si 0.93 44.91 29.55 68.60 2.03 46.94 16 4 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.56 -30.34 6.89 25.60 0.18 -30.16 16 8 H 0.05 2.88 7.82 -2.91 -0.02 2.86 16 9 C 0.01 0.56 1.64 -52.93 -0.09 0.48 16 10 C -0.55 -21.51 6.29 71.98 0.45 -21.05 16 11 S 2.63 103.34 4.62 -56.49 -0.26 103.08 16 12 O -0.98 -40.71 16.70 -127.65 -2.13 -42.84 16 13 O -0.98 -47.88 16.11 -127.65 -2.06 -49.94 16 14 N -1.01 -27.82 3.24 -517.17 -1.67 -29.49 16 15 C 0.09 1.52 6.48 86.23 0.56 2.08 16 16 C 0.09 1.04 7.34 86.53 0.63 1.67 16 17 N -0.70 -12.29 5.42 -467.09 -2.53 -14.82 16 18 C 0.52 13.80 7.84 87.79 0.69 14.49 16 19 O -0.59 -20.63 17.80 -3.03 -0.05 -20.68 16 20 C 0.11 3.09 6.34 85.45 0.54 3.63 16 21 C -0.18 -7.23 9.88 30.60 0.30 -6.93 16 22 C -0.15 -6.33 9.50 30.60 0.29 -6.03 16 23 H 0.27 14.23 8.32 -92.70 -0.77 13.46 16 24 H 0.11 4.75 8.14 -2.39 -0.02 4.73 16 25 H 0.14 4.00 7.95 -2.39 -0.02 3.98 16 26 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.12 1.98 7.02 -2.38 -0.02 1.97 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.41 5.76 8.80 -92.71 -0.82 4.94 16 31 H 0.10 3.39 7.49 -2.39 -0.02 3.37 16 32 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.11 3.38 8.08 -2.39 -0.02 3.36 16 34 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -76.13 315.90 -2.11 -78.24 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.28 Total: 16.88 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.01 Total: -38.19 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -3.93 Total: -93.49 kcal Atomic # 8 Polarization: -109.22 SS G_CDS: -4.24 Total: -113.46 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 103.34 SS G_CDS: -0.26 Total: 103.08 kcal Total: -76.13 -2.11 -78.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408190777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.290 kcal (2) G-P(sol) polarization free energy of solvation -76.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds